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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al. NATURE 420 (6915): 520-562 DEC 5 2002 and the citing papers |
Nodes: 549
Authors: 2932,
Journals: 196,
Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by date.
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| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
|---|---|---|---|---|---|
| 401 | 2 | 22 | 548 2004 FEB [15] TRENDS IN PHARMACOLOGICAL SCIENCES 25(2):64-66
Tinsley JH; Yuan SY; Wilson E Isoform-specific knockout of endothelial myosin light chain kinase: closing the gap on inflammatory lung disease | 0 | 0 |
| 402 | 6 | 31 | 524 2004 FEB 17 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(7):1916-1921
Istrail S; Sutton GG; Florea L; Halpern AL; Mobarry CM; Lippert R; Walenz B; Shatkay H; Dew I; Miller JR; Flanigan MJ; Edwards NJ; Bolanos R; Fasulo D; Halldorsson BV; Hannenhalli S; Turner R; Yooseph S; Lu F; Nusskern DR; Shue BC; Zheng XQH; Zhong F; Delcher AL; Huson DH; Kravitz SA; Mouchard L; Reinert K; Remington KA; Clark AG; Waterman MS; Eichler EE; Adams MD; Hunkapiller MW; Myers EW; Venter JC Whole-genome shotgun assembly and comparison of human genome assemblies | 0 | 0 |
| 403 | 3 | 49 | 350 2004 FEB 20 CELL 116(4):499-509
Cawley S; Bekiranov S; Ng HH; Kapranov P; Sekinger EA; Kampa D; Piccolboni A; Sementchenko V; Cheng J; Williams AJ; Wheeler R; Wong B; Drenkow J; Yamanaka M; Patel S; Brubaker S; Tammana H; Helt G; Struhl K; Gingeras TR Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs | 1 | 7 |
| 404 | 2 | 39 | 525 2004 FEB 24 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(8):2241-2246
Pan Y; Kislinger T; Gramolini AO; Zvaritch E; Kranias EG; MacLennan DH; Emili A Identification of biochemical adaptations in hyper-or hypocontractile hearts from phospholamban mutant mice by expression proteomics | 0 | 0 |
| 405 | 1 | 36 | 526 2004 FEB 24 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(8):2584-2589
Malnic B; Godfrey PA; Buck LB The human olfactory receptor gene family | 0 | 1 |
| 406 | 1 | 32 | 482 2004 FEB 26 MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS 546(1-2):29-38
Maneval ML; Eckert KA Effects of oxidative and alkylating damage on microsatellite instability in nontumorigenic human cells | 0 | 0 |
| 407 | 1 | 50 | 332 2004 MAR 1 AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY 286(3):F590-F596
Qi ZH; Whitt I; Mehta A; Jin JP; Zhao M; Harris RC; Fogo AB; Breyer MD Serial determination of glomerular filtration rate in conscious mice using FITC-inulin clearance | 0 | 0 |
| 408 | 1 | 106 | 450 2004 MAR 1 JOURNAL OF IMMUNOLOGY 172(5):2731-2738
Mestas J; Hughes CCW Of mice and not men: Differences between mouse and human immunology | 0 | 2 |
| 409 | 1 | 43 | 444 2004 MAR 5 JOURNAL OF BIOLOGICAL CHEMISTRY 279(10):9497-9503
Schoch GA; Yano JK; Wester MR; Griffin KJ; Stout CD; Johnson EF Structure of human microsomal cytochrome P4502C8 - Evidence for a peripheral fatty acid binding site | 0 | 1 |
| 410 | 1 | 79 | 347 2004 MAR 12 BRAIN RESEARCH 1000(1-2):156-173
Yu LQ; Frith MC; Suzuki Y; Peterfreund RA; Gearan T; Sugano S; Schwarzschild MA; Weng ZP; Fink JS; Chen JF Characterization of genomic organization of the adenosine A(2A) receptor gene by molecular and bioinformatics analyses | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 411 | 5 | 84 | 535 2004 MAR 12 SCIENCE 303(5664):1626-1632
Kazazian HH Mobile elements: Drivers of genome evolution | 0 | 3 |
| 412 | 1 | 76 | 329 2004 MAR [15] ADDICTION BIOLOGY 9(1):11-18
Fan LI; Bellinger FP; Ge YL; Wilce PA Genetic study of alcoholism and novel gene expression in the alcoholic brain | 0 | 0 |
| 413 | 1 | 61 | 359 2004 MAR [15] DIFFERENTIATION 72(2-3):92-102
Calegari F; Marzesco AM; Kittler R; Buchholz F; Huttner WB Tissue-specific RNA interference in post-implantation mouse embryos using directional electroporation and whole embryo culture | 0 | 0 |
| 414 | 1 | 25 | 360 2004 MAR [15] DNA AND CELL BIOLOGY 23(3):167-173
Di Tommaso A; Soler C; Roos C; Kitzis A; Ladeveze V The ink4a/arf locus evolution in primates: Characterization of three ARF sequences | 0 | 0 |
| 415 | 5 | 21 | 392 2004 MAR [15] GENOME RESEARCH 14(3):367-372
Frazer KA; Tao H; Osoegawa K; de Jong PJ; Chen XY; Doherty MF; Cox DR Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional | 3 | 3 |
| 416 | 4 | 26 | 393 2004 MAR [15] GENOME RESEARCH 14(3):442-450
Keightley PD; Johnson T MCALIGN: Stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution | 0 | 0 |
| 417 | 4 | 32 | 394 2004 MAR [15] GENOME RESEARCH 14(3):451-458
Liu YY; Liu XS; Wei LP; Altman RB; Batzoglou S Eukaryotic regulatory element conservation analysis and identification using comparative genomics | 0 | 0 |
| 418 | 3 | 32 | 395 2004 MAR [15] GENOME RESEARCH 14(3):463-471
Porcel BM; Delfour O; Castelli V; De Berardinis V; Friedlander L; Cruaud C; Ureta-Vidal A; Scarpelli C; Wincker P; Schachter V; Saurin W; Gyapay G; Salanoubat M; Weissenbach J Numerous novel annotations of the human genome sequence supported by a 5 '-end-enriched cDNA collection | 0 | 0 |
| 419 | 1 | 30 | 430 2004 MAR [15] GENOMICS 83(3):373-383
Clark RM; Dalgliesh GL; Endres D; Gomez M; Taylor J; Bidichandani SI Expansion of GAA triplet repeats in the human genome: unique origin of the FRDA mutation at the center of an Alu | 0 | 0 |
| 420 | 1 | 38 | 431 2004 MAR [15] GENOMICS 83(3):384-394
Zhang CT; Zhang R Isochore structures in the mouse genome | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 421 | 1 | 112 | 459 2004 MAR-APR [MAR 15] JOURNAL OF PROTEOME RESEARCH 3(2):296-306
Johnson JR; Florens L; Carucci DJ; Yates JR Proteomics in malaria | 0 | 0 |
| 422 | 4 | 77 | 472 2004 MAR [15] MOLECULAR BIOLOGY AND EVOLUTION 21(3):468-488
Siepel A; Haussler D Phylogenetic estimation of context-dependent substitution rates by maximum likelihood | 0 | 0 |
| 423 | 1 | 74 | 477 2004 MAR [15] MOLECULAR BIOLOGY OF THE CELL 15(3):1031-1043
Schlecht U; Demougin P; Koch R; Hermida L; Wiederkehr C; Descombes P; Pineau C; Jegou B; Primig M Expression profiling of mammalian male meiosis and gametogenesis identifies novel candidate genes for roles in the regulation of fertility | 0 | 1 |
| 424 | 2 | 42 | 492 2004 MAR [15] NATURE GENETICS 36(3):304-312
Chen WSV; Delrow J; Corrin PD; Frazier JP; Soriano P Identification and validation of PDGF transcriptional targets by microarray-coupled gene-trap mutagenesis | 0 | 0 |
| 425 | 3 | 102 | 495 2004 MAR [15] NATURE REVIEWS GENETICS 5(3):190-201
Steinmetz LM; Davis RW Maximizing the potential of functional genomics | 0 | 1 |
| 426 | 5 | 100 | 496 2004 MAR [15] NATURE REVIEWS GENETICS 5(3):202-212
Andersson L; Georges M Domestic-animal genomics: deciphering the genetics of complex traits | 0 | 2 |
| 427 | 2 | 25 | 497 2004 MAR [15] NATURE REVIEWS GENETICS 5(3):223-228
Hayashizaki Y; Kawai J Innovation - A new approach to the distribution and storage of genetic resources | 0 | 0 |
| 428 | 2 | 44 | 515 2004 MAR [15] NUCLEIC ACIDS RESEARCH 32(5):1731-1737
Kondrashov FA; Ogurtsov AY; Kondrashov AS Bioinformatical assay of human gene morbidity | 0 | 0 |
| 429 | 3 | 60 | 516 2004 MAR [15] NUCLEIC ACIDS RESEARCH 32(5):1774-1782
Shabalina SA; Ogurtsov AY; Rogozin IB; Koonin EV; Lipman DJ Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals | 0 | 0 |
| 430 | 9 | 21 | 337 2004 MAR 22 BIOINFORMATICS 20(5):636-U122
Shah N; Couronne O; Pennacchio LA; Brudno M; Batzoglou S; Bethel EW; Rubin EM; Hamann B; Dubchak I Phylo-VISTA: interactive visualization of multiple DNA sequence alignments | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 431 | 1 | 26 | 338 2004 MAR 22 BIOINFORMATICS 20(5):727-U518
Sun H; Davuluri RV Java-based application framework for visualization of gene regulatory region annotations | 0 | 0 |
| 432 | 1 | 42 | 357 2004 APR 1 DEVELOPMENTAL BIOLOGY 268(1):7-23
Ficker M; Powles N; Warr N; Pirvola U; Maconochie M Analysis of genes from inner ear developmental-stage cDNA subtraction reveals molecular regionalization of the otic capsule | 0 | 0 |
| 433 | 1 | 35 | 451 2004 APR 1 JOURNAL OF INFECTIOUS DISEASES 189(7):1245-1256
Sexton AC; Good RT; Hansen DS; D'Ombrain MC; Buckingham L; Simpson K; Schofield L Transcriptional profiling reveals suppressed erythropoiesis, up-regulated glycolysis, and interferon-associated responses in murine malaria | 0 | 0 |
| 434 | 1 | 8 | 483 2004 APR 1 NATURE 428(6982):464-466
Abbott A The Renaissance rat | 1 | 3 |
| 435 | 2 | 9 | 484 2004 APR 1 NATURE 428(6982):475-476
Lindblad-Toh K Genome sequencing - Three's company | 0 | 1 |
| 436 | 43 | 226 | 485 2004 APR 1 NATURE 428(6982):493-521
Gibbs RA; Weinstock GM; Metzker ML; Muzny DM; Sodergren EJ; Scherer S; Scott G; Steffen D; Worley KC; Burch PE; Okwuonu G; Hines S; Lewis L; DeRamo C; Delgado O; Dugan-Rocha S; Miner G; Morgan M; Hawes A; Gill R; Holt RA; Adams MD; Amanatides PG; Baden-Tillson H; Barnstead M; Chin S; Evans CA; Ferriera S; Fosler C; Glodek A; Gu ZP; Jennings D; Kraft CL; Nguyen T; Pfannkoch CM; Sitter C; Sutton GG; Venter JC; Woodage T; Smith D; Lee HM; Gustafson E; Cahill P; Kana A; Doucette-Stamm L; Weinstock K; Fechtel K; Weiss RB; Dunn DM; Green ED; Blakesley RW; Bouffard GG; de Jong J; Osoegawa K; Zhu BL; Marra M; Schein J; Bosdet I; Fjell C; Jones S; Krzywinski M; Mathewson C; Siddiqui A; Wye N; McPherson J; Zhao SY; Fraser CM; Shetty J; Shatsman S; Geer K; Chen YX; Abramzon S; Nierman WC; Gibbs RA; Weinstock GM; Havlak PH; Chen R; Durbin KJ; Egan A; Ren YR; Song XZ; Li BS; Liu Y; Qin X; Cawley S; Weinstock GM; Worley KC; Cooney AJ; Gibbs RA; D'Souza LM; Martin K; Wu JQ; Gonzalez-Garay ML; Jackson AR; Kalafus KJ; McLeod MP; Milosavljevic A; Virk D; Volkov A; Wheeler DA; Zhang ZD; Bailey JA; Eichler EE; Tuzun E; Birney E; Mongin E; Ureta-Vidal A; Woodwark C; Zdobnov E; Bork P; Suyama M; Torrents D; Alexandersson M; Trask BJ; Young JM; Smith D; Huang H; Fechtel K; Wang HJ; Xing HM; Weinstock K; Daniels S; Gietzen D; Schmidt J; Stevens K; Vitt U; Wingrove J; Camara F; Schmidt J; Stevens K; Vitt U; Wingrove J; Camara F; Alba MM; Abril JF; Guigo R; Smit A; Dubchak I; Rubin EM; Couronne O; Poliakov A; Hubner N; Ganten D; Goesele C; Hummel O; Kreitler T; Lee YA; Monti J; Schulz H; Zimdahl H; Himmelbauer H; Lehrach H; Jacob HJ; Bromberg S; Gullings-Handley J; Jensen-Seaman MI; Kwitek AE; Lazar J; Pasko D; Tonellato PJ; Twigger S; Ponting P; Duarte JM; Rice S; Goodstadt L; Beatson SA; Emes RD; Winter EE; Webber C; Brandt P; Nyakatura G; Adetobi M; Chiaromonte F; Elnitski L; Eswara P; Hardison RC; Hou MM; Kolbe D; Makova K; Miller W; Nekrutenko A; Riemer C; Schwartz S; Taylor J; Yang S; Zhang Y; Lindpaintner K; Andrews TD; Caccamo M; Clamp M; Clarke L; Curwen V; Durbin R; Eyras E; Searle SM; Cooper GM; Batzoglou S; Brudno M; Sidow A; Stone EA; Venter JC; Payseur BA; Bourque G; Lopez-Otin C; Puente XS; Chakrabarti K; Chatterji S; Dewey C; Pachter L; Bray N; Yap VB; Caspi A; Tesler G; Pevzner PA; Haussler D; Roskin KM; Baertsch R; Clawson H; Furey TS; Hinrichs AS; Karolchik D; Kent WJ; Rosenbloom KR; Trumbower H; Weirauch M; Cooper DN; Stenson PD; Ma B; Brent M; Arumugam M; Shteynberg D; Copley RR; Taylor MS; Riethman H; Mudunuri U; Peterson J; Guyer M; Felsenfeld A; Old S; Mockrin S; Collins F Genome sequence of the Brown Norway rat yields insights into mammalian evolution | 4 | 11 |
| 437 | 2 | 48 | 486 2004 APR 1 NATURE 428(6982):529-535
Grimwood J; Gordon LA; Olsen A; Terry A; Schmutz J; Lamerdin J; Hellsten U; Goodstein D; Couronne O; Gyamfi MT; Aerts A; Altherr M; Ashworth L; Bajorek E; Black S; Branscomb E; Caenepeel S; Carrano A; Caoile C; Chan YM; Christensen M; Cleland CA; Copeland A; Dalin E; Dehal P; Denys M; Detter JC; Escobar J; Flowers D; Fotopulos D; Garcia C; Georgescu AM; Glavina T; Gomez M; Gonzales E; Groza M; Hammon N; Hawkins T; Haydu L; Ho I; Huang W; Israni S; Jett J; Kadner K; Kimball H; Kobayashi A; Larionov V; Leem SH; Lopez F; Lou YL; Lowry S; Malfatti S; Martinez D; McCready P; Medina C; Morgan J; Nelson K; Nolan M; Ovcharenko I; Pitluck S; Pollard M; Popkie AP; Predki P; Quan G; Ramirez L; Rash S; Retterer J; Rodriguez A; Rogers S; Salamov A; Salazar A; She XW; Smith D; Slezak T; Solovyev V; Thayer N; Tice H; Tsai M; Ustaszewska A; Vo N; Wagner M; Wheeler J; Wu K; Xie G; Yang J; Dubchak I; Furey TS; DeJong P; Dickson M; Gordon D; Eichler EE; Pennacchio LA; Richardson P; Stubbs L; Rokhsar DS; Myers RM; Rubin EM; Lucas SM The DNA sequence and biology of human chromosome 19 | 1 | 2 |
| 438 | 1 | 24 | 372 2004 APR 14 GENE 330():19-27
Chavanas S; Mechin MC; Takahara H; Kawada A; Nachat R; Serre G; Simon M Comparative analysis of the mouse and human peptidylarginine deiminase gene clusters reveals highly conserved non-coding segments and a new human gene, PADI6 | 0 | 0 |
| 439 | 2 | 101 | 330 2004 APR [15] AGEING RESEARCH REVIEWS 3(2):125-141
de Magalhaes JP; Toussaint O How bioinformatics can help reverse engineer human aging | 0 | 0 |
| 440 | 2 | 39 | 354 2004 APR [15] CURRENT OPINION IN PLANT BIOLOGY 7(2):102-107
Martienssen RA; Rabinowicz PD; O'Shaughnessy A; McCombie WR Sequencing the maize genome | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 441 | 1 | 15 | 365 2004 APR [15] EXPERIMENTAL ANIMALS 53(2):151-154
Sakai T; Miura I; Yamada-Ishibashi S; Wakita Y; Kohara Y; Yamazaki Y; Inoue T; Kominami R; Moriwaki K; Shiroishi T; Yonekawa H; Kikkawa Y Update of mouse microsatellite database of Japan (MMDBJ) | 0 | 0 |
| 442 | 2 | 28 | 375 2004 APR [15] GENE THERAPY 11(8):711-721
Wang Z; Troilo PJ; Wang X; Griffiths TG; Pacchione SJ; Barnum AB; Harper LB; Pauley CJ; Niu Z; Denisova L; Follmer TT; Rizzuto G; Ciliberto G; Fattori E; Monica NL; Manam S; Ledwith BJ Detection of integration of plasmid DNA into host genomic DNA following intramuscular injection and electroporation | 0 | 0 |
| 443 | 1 | 41 | 377 2004 APR [15] GENES TO CELLS 9(4):331-344
Andachi Y Caenorhabditis elegans T-box genes tbx-9 and tbx-8 are required for formation of hypodermis and body-wall muscle in embryogenesis | 0 | 0 |
| 444 | 4 | 36 | 396 2004 APR [15] GENOME RESEARCH 14(4):493-506
Tuzun E; Bailey JA; Eichler EE Recent segmental duplications in the working draft assembly of the brown Norway rat | 3 | 3 |
| 445 | 5 | 32 | 397 2004 APR [15] GENOME RESEARCH 14(4):507-516
Bourque G; Pevzner PA; Tesler G Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse, and rat genomes | 1 | 1 |
| 446 | 5 | 45 | 398 2004 APR [15] GENOME RESEARCH 14(4):517-527
Yang S; Smit AF; Schwartz S; Chiaromonte F; Roskin KM; Haussler D; Miller W; Hardison RC Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes | 1 | 1 |
| 447 | 5 | 70 | 399 2004 APR [15] GENOME RESEARCH 14(4):528-538
Jensen-Seaman MI; Furey TS; Payseur BA; Lu YT; Roskin KM; Chen CF; Thomas MA; Haussler D; Jacob HJ Comparative recombination rates in the rat, mouse, and human genomes | 1 | 1 |
| 448 | 7 | 29 | 400 2004 APR [15] GENOME RESEARCH 14(4):539-548
Cooper GM; Brudno M; Stone EA; Dubchak I; Batzoglou S; Sidow A Characterization of evolutionary rates and constraints in three mammalian genomes | 2 | 2 |
| 449 | 1 | 34 | 401 2004 APR [15] GENOME RESEARCH 14(4):549-554
Alba MM; Guigo R Comparative analysis of amino acid repeats in rodents and humans | 2 | 2 |
| 450 | 3 | 41 | 402 2004 APR [15] GENOME RESEARCH 14(4):555-566
Taylor MS; Ponting CP; Copley RR Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes | 1 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 451 | 4 | 44 | 403 2004 APR [15] GENOME RESEARCH 14(4):567-573
Makova KD; Yang S; Chiaromonte F Insertions and deletions are male biased too: A whole-genome analysis in rodents | 1 | 1 |
| 452 | 5 | 15 | 404 2004 APR [15] GENOME RESEARCH 14(4):574-579
Yap VB; Pachter L Identification of evolutionary hotspots in the rodent genomes | 1 | 1 |
| 453 | 2 | 115 | 405 2004 APR [15] GENOME RESEARCH 14(4):591-602
Emes RD; Beatson SA; Ponting CP; Goodstadt L Evolution and comparative genomics of odorant-and pheromone-associated genes in rodents | 1 | 1 |
| 454 | 3 | 46 | 406 2004 APR [15] GENOME RESEARCH 14(4):603-608
Lane RP; Young J; Newman T; Trask BJ Species specificity in rodent pheromone receptor repertoires | 0 | 0 |
| 455 | 1 | 32 | 407 2004 APR [15] GENOME RESEARCH 14(4):623-630
Tufarelli C; Hardison R; Miller W; Hughes J; Clark K; Ventress N; Frischauf AM; Higgs DR Comparative analysis of the at-like globin clusters in mouse, rat, and human chromosomes indicates a mechanism underlying breaks in conserved synteny | 0 | 0 |
| 456 | 2 | 32 | 408 2004 APR [15] GENOME RESEARCH 14(4):640-650
Vitt U; Gietzen D; Stevens K; Wingrove J; Becha S; Bulloch S; Burrill J; Chawla N; Chien J; Crawford M; Ison C; Kearney L; Kwong M; Park J; Policky J; Weiler M; White R; Xu YM; Daniels S; Jacob H; Jensen-Seaman MI; Lazar J; Stuve L; Schmidt J Identification of candidate disease genes by EST alignments, synteny, and expression and verification of ensembl genes on rat chromosome 1q43-54 | 1 | 1 |
| 457 | 5 | 17 | 409 2004 APR [15] GENOME RESEARCH 14(4):661-664
Dewey C; Wu JQ; Cawley S; Alexandersson M; Gibbs R; Pachter L Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat | 1 | 1 |
| 458 | 4 | 22 | 410 2004 APR [15] GENOME RESEARCH 14(4):672-678
Kalafus KJ; Jackson AR; Milosavljevic A Pash: Efficient genome-scale sequence anchoring by positional hashing | 1 | 1 |
| 459 | 1 | 13 | 411 2004 APR [15] GENOME RESEARCH 14(4):679-684
Chen R; Sodergren E; Weinstock GM; Gibbs RA Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project | 1 | 1 |
| 460 | 7 | 26 | 412 2004 APR [15] GENOME RESEARCH 14(4):685-692
Brudno M; Poliakov A; Salamov A; Cooper GM; Sidow A; Rubin EM; Solovyev V; Batzoglou S; Dubchak I Automated whole-genome multiple alignment of rat, mouse, and human | 1 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 461 | 3 | 25 | 413 2004 APR [15] GENOME RESEARCH 14(4):700-707
Kolbe D; Taylor J; Elnitski L; Eswara P; Li J; Miller W; Hardison R; Chiaromonte F Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat | 1 | 1 |
| 462 | 7 | 26 | 414 2004 APR [15] GENOME RESEARCH 14(4):708-715
Blanchette M; Kent WJ; Riemer C; Elnitski L; Smit AFA; Roskin KM; Baertsch R; Rosenbloom K; Clawson H; Green ED; Haussler D; Miller W Aligning multiple genomic sequences with the threaded blockset aligner | 1 | 1 |
| 463 | 5 | 39 | 415 2004 APR [15] GENOME RESEARCH 14(4):721-732
Havlak P; Chen R; Durbin KJ; Egan A; Ren YR; Song XZ; Weinstock GM; Gibbs RA The atlas genome assembly system | 1 | 2 |
| 464 | 3 | 32 | 416 2004 APR [15] GENOME RESEARCH 14(4):758-765
Wilder SP; Bihoreau MT; Argoud K; Watanabe TK; Lathrop M; Gauguier D Integration of the rat recombination and EST maps in the rat genomic sequence and comparative mapping analysis with the mouse genome | 0 | 0 |
| 465 | 1 | 56 | 417 2004 APR [15] GENOME RESEARCH 14(4):766-779
Krzywinski M; Wallis J; Gosele C; Bosdet I; Chiu R; Graves T; Hummel O; Layman D; Mathewson C; Wye N; Zhu B; Albracht D; Asano J; Barber S; Brown-John M; Chan S; Chand S; Cloutier A; Davito J; Fjell C; Gaige T; Ganten D; Girn N; Guggenheimer K; Himmelbauer H; Kreitler T; Leach S; Lee D; Lehrach H; Mayo M; Mead K; Olson T; Pandoh P; Prabhu AL; Shin H; Tanzer S; Thompson J; Tsai M; Walker J; Yang G; Sekhon M; Hillier L; Zimdahl H; Marziali A; Osoegawa K; Zhao S; Siddiqui A; de Jong PJ; Warren W; Mardis E; McPherson JD; Wilson R; Hubner N; Jones S; Marra M; Schein J Integrated and sequence-ordered BAC and YAC-based physical maps for the rat genome | 1 | 1 |
| 466 | 1 | 23 | 418 2004 APR [15] GENOME RESEARCH 14(4):780-785
Osoegawa K; Zhu BL; Shu CL; Ren T; Cao Q; Vessere GM; Lutz MM; Jensen-Seaman MI; Zhao SY; de Jong PJ BAC resources for the rat genome project | 1 | 1 |
| 467 | 1 | 48 | 432 2004 APR [15] GENOMICS 83(4):577-587
Smolenski A; Schultess J; Danielewski O; Arguinzonis MIG; Thalheimer P; Kneitz S; Walter U; Lohmann SM Quantitative analysis of the cardiac fibroblast transcriptome-implications for NO/cGMP signaling | 0 | 0 |
| 468 | 1 | 33 | 433 2004 APR [15] GENOMICS 83(4):636-646
Choi IC; Oh JS; Cho BN; Ahnn JH; Jung YK; Kim DH; Cho CH Characterization and comparative genomic analysis of intronless Adams with testicular gene expression | 0 | 0 |
| 469 | 4 | 48 | 434 2004 APR [15] GENOMICS 83(4):694-705
Long LY; Davidson JN; Spear BT Striking differences between the mouse and the human alpha-fetoprotein enhancers | 0 | 0 |
| 470 | 1 | 83 | 447 2004 APR [15] JOURNAL OF BONE AND MINERAL RESEARCH 19(4):587-599
Bouxsein ML; Uchiyama T; Rosen CJ; Shultz KL; Donahue LR; Turner CH; Sen S; Churchill GA; Muller R; Beamer WG Mapping quantitative trait loci for vertebral trabecular bone volume fraction and microarchitecture in mice | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 471 | 2 | 39 | 448 2004 APR [15] JOURNAL OF BONE AND MINERAL RESEARCH 19(4):600-606
Judex S; Garman R; Squire M; Donahue LR; Rubin C Genetically based influences on the site-specific regulation of trabecular and cortical bone morphology | 0 | 0 |
| 472 | 1 | 90 | 449 2004 APR 15 JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES 803(1):3-16
Baggerman G; Verleyen P; Clynen E; Huybrechts J; De Loof A; Schoofs L Peptidomics | 0 | 0 |
| 473 | 2 | 93 | 454 2004 APR [15] JOURNAL OF MOLECULAR MEDICINE-JMM 82(4):232-239
Chen XG; Wolin SL The Ro 60 kDa autoantigen: insights into cellular function and role in autoimmunity | 0 | 0 |
| 474 | 1 | 38 | 458 2004 APR [15] JOURNAL OF PINEAL RESEARCH 36(3):165-170
Sharman EH; Sharman KG; Ge YW; Lahiri DK; Bondy SC Age-related changes in murine CNS mRNA gene expression are modulated by dietary melatonin | 0 | 0 |
| 475 | 1 | 32 | 481 2004 APR [15] MOLECULAR PHYLOGENETICS AND EVOLUTION 31(1):153-163
Plocik A; Layden J; Kesseli R Comparative analysis of NBS domain sequences of NBS-LRR disease resistance genes from sunflower, lettuce, and chicory | 0 | 0 |
| 476 | 10 | 98 | 498 2004 APR [15] NATURE REVIEWS GENETICS 5(4):276-287
Wasserman WW; Sandelin A Applied bioinformatics for the identification of regulatory elements | 1 | 1 |
| 477 | 8 | 80 | 499 2004 APR [15] NATURE REVIEWS GENETICS 5(4):316-323
Mattick JS RNA regulation: a new genetics? | 0 | 1 |
| 478 | 2 | 103 | 539 2004 APR 15 TOXICOLOGY LETTERS 150(1):29-42
Liu-Stratton YL; Roy S; Sen CK DNA microarray technology in nutraceutical and food safety | 0 | 0 |
| 479 | 5 | 39 | 541 2004 APR [15] TRENDS IN BIOTECHNOLOGY 22(4):161-167
Hayashizaki Y; Kanamori M Dynamic transcriptome of mice | 0 | 0 |
| 480 | 4 | 56 | 478 2004 APR 23 MOLECULAR CELL 14(2):221-231
Sorek R; Lev-Maor G; Reznik M; Dagan T; Belinky F; Graur D; Ast G Minimal conditions for exonization of intronic sequences: 5 ' splice site formation in Alu exons | 0 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 481 | 1 | 48 | 345 2004 APR 29 BMC GENETICS 5():-
Peirce JL; Lu L; Gu J; Silver LM; Williams RW A new set of BXD recombinant inbred lines from advanced intercross populations in mice | 0 | 0 |
| 482 | 3 | 26 | 339 2004 MAY 1 BIOINFORMATICS 20(7):1053-1059
Choi KP; Zeng FF; Zhang LX Good spaced seeds for homology search | 0 | 0 |
| 483 | 1 | 53 | 358 2004 MAY 1 DEVELOPMENTAL BIOLOGY 269(1):276-285
Svoboda P; Stein P; Anger M; Bernstein E; Hannon GJ; Schultz RM RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos | 0 | 0 |
| 484 | 1 | 54 | 480 2004 MAY 1 MOLECULAR PHARMACOLOGY 65(5):1148-1158
Wang H; Zhao Y; Bradbury JA; Graves JP; Foley J; Blaisdell JA; Goldstein JA; Zeldin DC Cloning, expression, and characterization of three new mouse cytochrome P450 enzymes and partial characterization of their fatty acid oxidation activities | 0 | 0 |
| 485 | 3 | 87 | 379 2004 MAY [15] GENETICS 167(1):377-385
Sundstrom H; Webster MT; Ellegren H Reduced variation on the chicken Z chromosome | 0 | 0 |
| 486 | 4 | 79 | 380 2004 MAY [15] GENETICS 167(1):423-437
Nachman MW; D'Agostino SL; Tillquist CR; Mobasher Z; Hammer MF Nucleotide variation at Msn and Alas2, two genes flanking the centromere of the X chromosome in humans | 0 | 0 |
| 487 | 8 | 51 | 419 2004 MAY [15] GENOME RESEARCH 14(5):789-801
Bailey JA; Church DM; Ventura M; Rocchi M; Eichler EE Analysis of segmental duplications and genome assembly in the mouse | 0 | 0 |
| 488 | 3 | 62 | 420 2004 MAY [15] GENOME RESEARCH 14(5):802-811
Castillo-Davis CI; Kondrashov FA; Hartl DL; Kulathinal RJ The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint | 0 | 0 |
| 489 | 2 | 17 | 421 2004 MAY [15] GENOME RESEARCH 14(5):829-834
Tanay A; Gat-Viks I; Shamir R A global view of the selection forces in the evolution of yeast cis-regulation | 0 | 0 |
| 490 | 10 | 32 | 422 2004 MAY [15] GENOME RESEARCH 14(5):852-859
Dermitzakis ET; Kirkness E; Schwarz S; Birney E; Reymond A; Antonarakis SE Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment | 1 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 491 | 3 | 28 | 423 2004 MAY [15] GENOME RESEARCH 14(5):942-950
Curwen V; Eyras E; Andrews TD; Clarke L; Mongin E; Searle SMJ; Clamp M The Ensembl automatic gene annotation system | 0 | 0 |
| 492 | 1 | 14 | 424 2004 MAY [15] GENOME RESEARCH 14(5):963-970
Searle SMJ; Gilbert J; Iyer V; Clamp M The Otter annotation system | 0 | 0 |
| 493 | 4 | 27 | 425 2004 MAY [15] GENOME RESEARCH 14(5):988-995
Birney E; Clamp M; Durbin R GeneWise and genomewise | 0 | 0 |
| 494 | 1 | 67 | 435 2004 MAY [15] GENOMICS 83(5):790-801
Pimenta AF; Levitt P Characterization of the genomic structure of the mouse limbic system-associated membrane protein (Lsamp) gene | 0 | 0 |
| 495 | 1 | 41 | 436 2004 MAY [15] GENOMICS 83(5):802-811
Zhang XM; Rodriguez I; Mombaerts P; Firestein S Odorant and vomeronasal receptor genes in two mouse genome assemblies | 0 | 2 |
| 496 | 4 | 5 | 439 2004 MAY [15] HEREDITY 92(5):363-364
Bofkin L; Whelan S Functional needles in a genomic haystack | 0 | 0 |
| 497 | 3 | 45 | 465 2004 MAY [15] MAMMALIAN GENOME 15(5):344-351
Buchner DA; Seburn KL; Frankel WN; Meisler MH Three ENU-induced neurological mutations in the pore loop of sodium channel Scn8a (Na(v)1.6) and a genetically linked retinal mutation, rd13 | 0 | 0 |
| 498 | 2 | 42 | 468 2004 MAY [15] MOLECULAR AND CELLULAR BIOLOGY 24(9):4004-4018
Yusa K; Takeda J; Horie K Enhancement of sleeping beauty transposition by CpG methylation: Possible role of heterochromatin formation | 0 | 0 |
| 499 | 1 | 66 | 473 2004 MAY [15] MOLECULAR BIOLOGY AND EVOLUTION 21(5):828-840
Shiu SH; Li WH Origins, lineage-specific expansions, and multiple losses of tyrosine kinases in eukaryotes | 0 | 1 |
| 500 | 2 | 4 | 500 2004 MAY [15] NATURE REVIEWS GENETICS 5(5):327-327
Campbell N Year of the rat | 0 | 0 |
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