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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al. NATURE 420 (6915): 520-562 DEC 5 2002 and the citing papers |
Nodes: 549
Authors: 2932,
Journals: 196,
Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by GCS.
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# | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
---|---|---|---|---|---|
1 | 1 | 331 | 2 2002 NATURE 420(6915):520-562
Waterston RH; Lindblad-Toh K; Birney E; Rogers J; Abril JF; Agarwal P; Agarwala R; Ainscough R; Alexandersson M; An P; Antonarakis SE; Attwood J; Baertsch R; Bailey J; Barlow K; Beck S; Berry E; Birren B; Bloom T; Bork P; Botcherby M; Bray N; Brent MR; Brown DG; Brown SD; Bult C; Burton J; Butler J; Campbell RD; Carninci P; Cawley S; Chiaromonte F; Chinwalla AT; Church DM; Clamp M; Clee C; Collins FS; Cook LL; Copley RR; Coulson A; Couronne O; Cuff J; Curwen V; Cutts T; Daly M; David R; Davies J; Delehaunty KD; Deri J; Dermitzakis ET; Dewey C; Dickens NJ; Diekhans M; Dodge S; Dubchak I; Dunn DM; Eddy SR; Elnitski L; Emes RD; Eswara P; Eyras E; Felsenfeld A; Fewell GA; Flicek P; Foley K; Frankel WN; Fulton LA; Fulton RS; Furey TS; Gage D; Gibbs RA; Glusman G; Gnerre S; Goldman N; Goodstadt L; Grafham D; Graves TA; Green ED; Gregory S; Guigo R; Guyer M; Hardison RC; Haussler D; Hayashizaki Y; Hillier LW; Hinrichs A; Hlavina W; Holzer T; Hsu F; Hua A; Hubbard T; Hunt A; Jackson I; Jaffe DB; Johnson LS; Jones M; Jones TA; Joy A; Kamal M; Karlsson EK; Karolchik D; Kasprzyk A; Kawai J; Keibler E; Kells C; Kent WJ; Kirby A; Kolbe DL; Korf I; Kucherlapati RS; Kulbokas EJ; Kulp D; Landers T; Leger JP; Leonard S; Letunic I; Levine R; Li J; Li M; Lloyd C; Lucas S; Ma B; Maglott DR; Mardis ER; Matthews L; Mauceli E; Mayer JH; McCarthy M; McCombie WR; McLaren S; McLay K; McPherson JD; Meldrim J; Meredith B; Mesirov JP; Miller W; Miner TL; Mongin E; Montgomery KT; Morgan M; Mott R; Mullikin JC; Muzny DM; Nash WE; Nelson JO; Nhan MN; Nicol R; Ning Z; Nusbaum C; O'Connor MJ; Okazaki Y; Oliver K; Larty EO; Pachter L; Parra G; Pepin KH; Peterson J; Pevzner P; Plumb R; Pohl CS; Poliakov A; Ponce TC; Ponting CP; Potter S; Quail M; Reymond A; Roe BA; Roskin KM; Rubin EM; Rust AG; Santos R; Sapojnikov V; Schultz B; Schultz J; Schwartz MS; Schwartz S; Scott C; Seaman S; Searle S; Sharpe T; Sheridan A; Shownkeen R; Sims S; Singer JB; Slater G; Smit A; Smith DR; Spencer B; Stabenau A; Strange-Thomann NS; Sugnet C; Suyama M; Tesler G; Thompson J; Torrents D; Trevaskis E; Tromp J; Ucla C; Vidal AU; Vinson JP; von Niederhausern AC; Wade CM; Wall M; Weber RJ; Weiss RB; Wendl MC; West AP; Wetterstrand K; Wheeler R; Whelan S; Wierzbowski J; Willey D; Williams S; Wilson RK; Winter E; Worley KC; Wyman D; Yang S; Yang SP; Zdobnov EM; Zody MC; Lander ES Initial sequencing and comparative analysis of the mouse genome | 551 | 548 |
2 | 1 | 50 | 230 2003 NATURE 423(6937):241-254
Kellis M; Patterson N; Endrizzi M; Birren B; Lander ES Sequencing and comparison of yeast species to identify genes and regulatory elements | 26 | 113 |
3 | 1 | 44 | 227 2003 NATURE 422(6934):835-847
Collins FS; Green ED; Guttmacher AE; Guyer MS A vision for the future of genomics research | 14 | 88 |
4 | 1 | 27 | 231 2003 NATURE 423(6941):762-769
Yamauchi T; Kamon J; Ito Y; Tsuchida A; Yokomizo T; Kita S; Sugiyama T; Miyagishi M; Hara K; Tsunoda M; Murakami K; Ohteki T; Uchida S; Takekawa S; Waki H; Tsuno NH; Shibata Y; Terauchi Y; Froguel P; Tobe K; Koyasu S; Taira K; Kitamura T; Shimizu T; Nagai R; Kadowaki T Cloning of adiponectin receptors that mediate antidiabetic metabolic effects | 0 | 72 |
5 | 1 | 50 | 232 2003 NATURE 423(6942):825-U2
Skaletsky H; Kuroda-Kawaguchi T; Minx PJ; Cordum HS; Hillier L; Brown LG; Repping S; Pyntikova T; Ali J; Bieri T; Chinwalla A; Delehaunty A; Delehaunty K; Du H; Fewell G; Fulton L; Fulton R; Graves T; Hou SF; Latrielle P; Leonard S; Mardis E; Maupin R; McPherson J; Miner T; Nash W; Nguyen C; Ozersky P; Pepin K; Rock S; Rohlfing T; Scott K; Schultz B; Strong C; Tin-Wollam A; Yang SP; Waterston RH; Wilson RK; Rozen S; Page DC The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes | 7 | 65 |
6 | 1 | 16 | 124 2003 GENOME RESEARCH 13(1):103-107
Schwartz S; Kent WJ; Smit A; Zhang Z; Baertsch R; Hardison RC; Haussler D; Miller W Human-mouse alignments with BLASTZ | 38 | 60 |
7 | 4 | 30 | 234 2003 NATURE 424(6950):788-793
Thomas JW; Touchman JW; Blakesley RW; Bouffard GG; Beckstrom-Sternberg SM; Margulies EH; Blanchette M; Siepel AC; Thomas PJ; McDowell JC; Maskeri B; Hansen NF; Schwartz MS; Weber RJ; Kent WJ; Karolchik D; Bruen TC; Bevan R; Cutler DJ; Schwartz S; Elnitski L; Idol JR; Prasad AB; Lee-Lin SQ; Maduro VVB; Summers TJ; Portnoy ME; Dietrich NL; Akhter N; Ayele K; Benjamin B; Cariaga K; Brinkley CP; Brooks SY; Granite S; Guan X; Gupta J; Haghighi P; Ho SL; Huang MC; Karlins E; Laric PL; Legaspi R; Lim MJ; Maduro QL; Masiello CA; Mastrian SD; McCloskey JC; Pearson R; Stantripop S; Tiongson EE; Tran JT; Tsurgeon C; Vogt JL; Walker MA; Wetherby KD; Wiggins LS; Young AC; Zhang LH; Osoegawa K; Zhu B; Zhao B; Shu CL; De Jong PJ; Lawrence CE; Smit AF; Chakravarti A; Haussler D; Green P; Miller W; Green ED Comparative analyses of multi-species sequences from targeted genomic regions | 35 | 50 |
8 | 1 | 14 | 304 2003 SCIENCE 299(5611):1391-1394
Boffelli D; McAuliffe J; Ovcharenko D; Lewis KD; Ovcharenko I; Pachter L; Rubin EM Phylogenetic shadowing of primate sequences to find functional regions of the human genome | 25 | 48 |
9 | 1 | 207 | 31 2003 BLOOD 101(6):2099-2114
Baum C; Dullmann J; Li ZX; Fehse B; Meyer J; Williams DA; von Kalle C Side effects of retroviral gene transfer into hematopoietic stem cells | 0 | 38 |
10 | 1 | 24 | 181 2003 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 11(5):579-583
Katoh M; Katoh M Recombination cluster around FGFR2-WDR11-HTPAPL locus on human chromosome 10q26 | 0 | 38 |
# | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
11 | 1 | 24 | 123 2003 GENOME RESEARCH 13(1):97-102
Bray N; Dubchak I; Pachter L AVID: A global alignment program | 17 | 37 |
12 | 1 | 30 | 3 2002 NATURE 420(6915):578-582
Dermitzakis ET; Reymond A; Lyle R; Scamuffa N; Ucla C; Deutsch S; Stevenson BJ; Flegel V; Bucher P; Jongeneel CV; Antonarakis SE Numerous potentially functional but non-genic conserved sequences on human chromosome 21 | 25 | 35 |
13 | 1 | 87 | 117 2003 GENOME RESEARCH 13(1):13-26
Hardison RC; Roskin KM; Yang S; Diekhans M; Kent WJ; Weber R; Elnitski L; Li J; O'Connor M; Kolbe D; Schwartz S; Furey TS; Whelan S; Goldman N; Smit A; Miller W; Chiaromonte F; Haussler D Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution | 27 | 33 |
14 | 1 | 29 | 240 2003 NATURE GENETICS 34(3):297-302
Nakai H; Montini E; Fuess S; Storm TA; Grompe M; Kay MA AAV serotype 2 vectors preferentially integrate into active genes in mice | 1 | 29 |
15 | 1 | 30 | 226 2003 NATURE 422(6930):433-438
Bowers JE; Chapman BA; Rong JK; Paterson AH Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events | 1 | 28 |
16 | 1 | 36 | 116 2003 GENOME RESEARCH 13(1):1-12
Frazer KA; Elnitski L; Church DM; Dubchak I; Hardison RC Cross-species sequence comparisons: A review of methods and available resources | 12 | 25 |
17 | 1 | 100 | 248 2003 NATURE REVIEWS GENETICS 4(4):315-322
Muller M; Kersten S Nutrigenomics: goals and strategies | 1 | 23 |
18 | 5 | 100 | 245 2003 NATURE REVIEWS GENETICS 4(4):251-262
Ureta-Vidal A; Ettwiller L; Birney E Comparative genomics: Genome-wide analysis in metazoan eukaryotes | 12 | 22 |
19 | 1 | 29 | 308 2003 SCIENCE 301(5641):1898-1903
Kirkness EF; Bafna V; Halpern AL; Levy S; Remington K; Rusch DB; Delcher AL; Pop M; Wang W; Fraser CM; Venter JC The dog genome: Survey sequencing and comparative analysis | 9 | 21 |
20 | 1 | 42 | 118 2003 GENOME RESEARCH 13(1):37-45
Pevzner P; Tesler G Genome Rearrangements in mammalian evolution: Lessons from human and mouse genomes | 9 | 20 |
# | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
21 | 1 | 36 | 121 2003 GENOME RESEARCH 13(1):73-80
Couronne O; Poliakov A; Bray N; Ishkhanov T; Ryaboy D; Rubin E; Pachter L; Dubchak I Strategies and tools for whole-genome alignments | 13 | 19 |
22 | 2 | 131 | 250 2003 NATURE REVIEWS GENETICS 4(8):598-612
Jobling MA; Tyler-Smith C The human Y chromosome: An evolutionary marker comes of age | 1 | 18 |
23 | 2 | 143 | 249 2003 NATURE REVIEWS GENETICS 4(7):544-558
Puente XS; Sanchez LM; Overall CM; Lopez-Otin C Human and mouse proteases: A comparative genomic approach | 1 | 17 |
24 | 3 | 39 | 283 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(3):1140-1145
Guigo R; Dermitzakis ET; Agarwal P; Ponting CP; Parra G; Reymond A; Abril JF; Keibler E; Lyle R; Ucla C; Antonarakis SE; Brent MR Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes | 10 | 17 |
25 | 1 | 60 | 32 2003 BMC BIOINFORMATICS 4():-
Tatusov RL; Fedorova ND; Jackson JD; Jacobs AR; Kiryutin B; Koonin EV; Krylov DM; Mazumder R; Mekhedov SL; Nikolskaya AN; Rao BS; Smirnov S; Sverdlov AV; Vasudevan S; Wolf YI; Yin JJ; Natale DA The COG database: an updated version includes eukaryotes | 0 | 15 |
26 | 1 | 55 | 71 2003 DEVELOPMENTAL BIOLOGY 258(2):432-442
Moss EG; Tang LJ Conservation of the heterochronic regulator Lin-28, its developmental expression and microRNA complementary sites | 0 | 15 |
27 | 1 | 28 | 120 2003 GENOME RESEARCH 13(1):64-72
Elnitski L; Hardison RC; Li J; Yang S; Kolbe D; Eswara P; O'Connor MJ; Schwartz S; Miller W; Chiaromonte F Distinguishing regulatory DNA from neutral sites | 12 | 15 |
28 | 2 | 49 | 233 2003 NATURE 424(6945):157-U2
Hillier LW; Fulton RS; Fulton LA; Graves TA; Pepin KH; Wagner-McPherson C; Layman D; Maas J; Jaeger S; Walker R; Wylie K; Sekhon M; Becker MC; O'Laughlin MD; Schaller ME; Fewell GA; Delehaunty KD; Miner TL; Nash WE; Cordes M; Du H; Sun H; Edwards J; Bradshaw-Cordum H; Ali J; Andrews S; Isak A; VanBrunt A; Nguyen C; Du FY; Lamar B; Courtney L; Kalicki J; Ozersky P; Bielicki L; Scott K; Holmes A; Harkins R; Harris A; Strong CM; Hou SF; Tomlinson C; Dauphin-Kohlberg S; Kozlowicz-Reilly A; Leonard S; Rohlfing T; Rock SM; Tin-Wollam AM; Abbott A; Minx P; Maupin R; Strowmatt C; Latreille P; Miller N; Johnson D; Murray J; Woessner JP; Wendl MC; Yang SP; Schultz BR; Wallis JW; Spieth J; Bieri TA; Nelson JO; Berkowicz N; Wohldmann PE; Cook LL; Hickenbotham MT; Eldred J; Williams D; Bedell JA; Mardis ER; Clifton SW; Chissoe SL; Marra MA; Raymond C; Haugen E; Gillett W; Zhou Y; James R; Phelps K; Iadanoto S; Bubb K; Simms E; Levy R; Clendenning J; Kaul R; Kent WJ; Furey TS; Baertsch RA; Brent MR; Keibler E; Flicek P; Bork P; Suyama M; Bailey JA; Portnoy ME; Torrents D; Chinwalla AT; Gish WR; Eddy SR; McPherson JD; Olson MV; Eichler EE; Green ED; Waterston RH; Wilson RK The DNA sequence of human chromosome 7 | 10 | 15 |
29 | 2 | 43 | 6 2003 AMERICAN JOURNAL OF HUMAN GENETICS 72(6):1527-1535
Hellmann I; Ebersberger I; Ptak SE; Paabo S; Przeworski M A neutral explanation for the correlation of diversity with recombination rates in humans | 7 | 14 |
30 | 1 | 29 | 119 2003 GENOME RESEARCH 13(1):46-54
Flicek P; Keibler E; Hu P; Korf I; Brent MR Leveraging the mouse genome for gene prediction in human: From whole-genome shotgun reads to a global synteny map | 9 | 14 |
# | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
31 | 1 | 39 | 127 2003 GENOME RESEARCH 13(5):831-837
Hellmann I; Zollner S; Enard W; Ebersberger I; Nickel B; Paabo S Selection on human genes as revealed by comparisons to chimpanzee cDNA | 9 | 14 |
32 | 1 | 92 | 228 2003 NATURE 422(6934):849-857
Carroll SB Genetics and the making of Homo sapiens | 1 | 14 |
33 | 1 | 30 | 235 2003 NATURE 425(6953):81-86
Kile BT; Hentges KE; Clark AT; Nakamura H; Salinger AP; Liu B; Box N; Stockton DW; Johnson RL; Behringer RR; Bradley A; Justice MJ Functional genetic analysis of mouse chromosome 11 | 3 | 14 |
34 | 5 | 45 | 257 2003 NUCLEIC ACIDS RESEARCH 31(13):3518-3524
Schwartz S; Elnitski L; Li M; Weirauch M; Riemer C; Smit A; Program NCS; Green ED; Hardison RC; Miller W MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences | 7 | 14 |
35 | 1 | 113 | 133 2003 GENOME RESEARCH 13(6B):1324-1334
Kiyosawa H; Yamanaka I; Osato N; Kondo S; Hayashizaki Y Antisense transcripts with FANTOM2 clone set and their implications for gene regulation | 3 | 13 |
36 | 1 | 104 | 246 2003 NATURE REVIEWS GENETICS 4(4):285-295
Satoh N The ascidian tadpole larva: Comparative molecular development and genomics | 2 | 13 |
37 | 1 | 76 | 175 2003 HUMAN MOLECULAR GENETICS 12(11):1313-1320
Nurtdinov RN; Artamonova II; Mironov AA; Gelfand MS Low conservation of alternative splicing patterns in the human and mouse genomes | 3 | 12 |
38 | 1 | 66 | 288 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(12):7181-7188
Wildman DE; Uddin M; Liu GZ; Grossman LI; Goodman M Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: Enlarging genus Homo | 1 | 12 |
39 | 2 | 31 | 305 2003 SCIENCE 300(5620):767-772
Scherer SW; Cheung J; MacDonald JR; Osborne LR; Nakabayashi K; Herbrick JA; Carson AR; Parker-Katiraee L; Skaug J; Khaja R; Zhang JJ; Hudek AK; Li M; Haddad M; Duggan GE; Fernandez BA; Kanematsu E; Gentles S; Christopoulos CC; Choufani S; Kwasnicka D; Zheng XQH; Lai ZW; Nusskern D; Zhang Q; Gu ZP; Lu F; Zeesman S; Nowaczyk MJ; Teshima I; Chitayat D; Shuman C; Weksberg R; Zackai EH; Grebe TA; Cox SR; Kirkpatrick SJ; Rahman N; Friedman JM; Heng HHQ; Pelicci PG; Lo-Coco F; Belloni E; Shaffer LG; Pober B; Morton CC; Gusella JF; Bruns GAP; Korf BR; Quade BJ; Ligon AH; Ferguson H; Higgins AW; Leach NT; Herrick SR; Lemyre E; Farra CG; Kim HG; Summers AM; Gripp KW; Roberts W; Szatmari P; Winsor EJT; Grzeschik KH; Teebi A; Minassian BA; Kere J; Armengol L; Pujana MA; Estivill X; Wilson MD; Koop BF; Tosi S; Moore GE; Boright AP; Zlotorynski E; Kerem B; Kroisel PM; Petek E; Oscier DG; Mould SJ; Dohner H; Dohner K; Rommens JM; Vincent JB; Venter JC; Li PW; Mural RJ; Adams MD; Tsui LC Human chromosome 7: DNA sequence and biology | 7 | 12 |
40 | 4 | 24 | 310 2003 SCIENCE 302(5647):1033-1035
Dermitzakis ET; Reymond A; Scamuffa N; Ucla C; Kirkness E; Rossier C; Antonarakis SE Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs) | 9 | 12 |
# | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
41 | 2 | 45 | 315 2003 TRENDS IN GENETICS 19(4):200-206
Hedges SB; Kumar S Genomic clocks and evolutionary timescales | 0 | 12 |
42 | 1 | 40 | 125 2003 GENOME RESEARCH 13(1):108-117
Parra G; Agarwal P; Abril JF; Wiehe T; Fickett JW; Guigo R Comparative gene prediction in human and mouse | 9 | 11 |
43 | 1 | 64 | 132 2003 GENOME RESEARCH 13(6B):1273-1289
Carninci P; Waki K; Shiraki T; Konno H; Shibata K; Itoh M; Aizawa K; Arakawa T; Ishii Y; Sasaki D; Bono H; Kondo S; Sugahara Y; Saito R; Osato N; Fukuda S; Sato K; Watahiki A; Hirozane-Kishikawa T; Nakamura M; Shibata Y; Yasunishi A; Kikuchi N; Yoshiki A; Kusakabe M; Gustincich S; Beisel K; Pavan W; Aidinis V; Nakagawara A; Held WA; Iwata H; Kono T; Nakauchi H; Lyons P; Wells C; Hume DA; Fagiolini M; Hensch TK; Brinkmeier M; Camper S; Hirota J; Mombaerts P; Muramatsu M; Okazaki Y; Kawai J; Hayashizaki Y Targeting a complex transcriptome: The construction of the mouse full-length cDNA encyclopedia | 3 | 11 |
44 | 1 | 52 | 216 2003 MOLECULAR & CELLULAR PROTEOMICS 2(2):96-106
Kislinger T; Rahman K; Radulovic D; Cox B; Rossant J; Emili A PRISM, a generic large scale proteomic investigation strategy for mammals | 2 | 11 |
45 | 1 | 432 | 222 2003 MOLECULAR BIOLOGY AND EVOLUTION 20(9):1377-1419
Wray GA; Hahn MW; Abouheif E; Balhoff JP; Pizer M; Rockman MV; Romano LA The evolution of transcriptional regulation in eukaryotes | 1 | 11 |
46 | 1 | 45 | 247 2003 NATURE REVIEWS GENETICS 4(4):309-314
Bochner BR New technologies to assess genotype-phenotype relationships | 0 | 11 |
47 | 1 | 78 | 313 2003 TRENDS IN ECOLOGY & EVOLUTION 18(6):292-298
Zhang JZ Evolution by gene duplication: an update | 1 | 11 |
48 | 43 | 226 | 485 2004 NATURE 428(6982):493-521
Gibbs RA; Weinstock GM; Metzker ML; Muzny DM; Sodergren EJ; Scherer S; Scott G; Steffen D; Worley KC; Burch PE; Okwuonu G; Hines S; Lewis L; DeRamo C; Delgado O; Dugan-Rocha S; Miner G; Morgan M; Hawes A; Gill R; Holt RA; Adams MD; Amanatides PG; Baden-Tillson H; Barnstead M; Chin S; Evans CA; Ferriera S; Fosler C; Glodek A; Gu ZP; Jennings D; Kraft CL; Nguyen T; Pfannkoch CM; Sitter C; Sutton GG; Venter JC; Woodage T; Smith D; Lee HM; Gustafson E; Cahill P; Kana A; Doucette-Stamm L; Weinstock K; Fechtel K; Weiss RB; Dunn DM; Green ED; Blakesley RW; Bouffard GG; de Jong J; Osoegawa K; Zhu BL; Marra M; Schein J; Bosdet I; Fjell C; Jones S; Krzywinski M; Mathewson C; Siddiqui A; Wye N; McPherson J; Zhao SY; Fraser CM; Shetty J; Shatsman S; Geer K; Chen YX; Abramzon S; Nierman WC; Gibbs RA; Weinstock GM; Havlak PH; Chen R; Durbin KJ; Egan A; Ren YR; Song XZ; Li BS; Liu Y; Qin X; Cawley S; Weinstock GM; Worley KC; Cooney AJ; Gibbs RA; D'Souza LM; Martin K; Wu JQ; Gonzalez-Garay ML; Jackson AR; Kalafus KJ; McLeod MP; Milosavljevic A; Virk D; Volkov A; Wheeler DA; Zhang ZD; Bailey JA; Eichler EE; Tuzun E; Birney E; Mongin E; Ureta-Vidal A; Woodwark C; Zdobnov E; Bork P; Suyama M; Torrents D; Alexandersson M; Trask BJ; Young JM; Smith D; Huang H; Fechtel K; Wang HJ; Xing HM; Weinstock K; Daniels S; Gietzen D; Schmidt J; Stevens K; Vitt U; Wingrove J; Camara F; Schmidt J; Stevens K; Vitt U; Wingrove J; Camara F; Alba MM; Abril JF; Guigo R; Smit A; Dubchak I; Rubin EM; Couronne O; Poliakov A; Hubner N; Ganten D; Goesele C; Hummel O; Kreitler T; Lee YA; Monti J; Schulz H; Zimdahl H; Himmelbauer H; Lehrach H; Jacob HJ; Bromberg S; Gullings-Handley J; Jensen-Seaman MI; Kwitek AE; Lazar J; Pasko D; Tonellato PJ; Twigger S; Ponting P; Duarte JM; Rice S; Goodstadt L; Beatson SA; Emes RD; Winter EE; Webber C; Brandt P; Nyakatura G; Adetobi M; Chiaromonte F; Elnitski L; Eswara P; Hardison RC; Hou MM; Kolbe D; Makova K; Miller W; Nekrutenko A; Riemer C; Schwartz S; Taylor J; Yang S; Zhang Y; Lindpaintner K; Andrews TD; Caccamo M; Clamp M; Clarke L; Curwen V; Durbin R; Eyras E; Searle SM; Cooper GM; Batzoglou S; Brudno M; Sidow A; Stone EA; Venter JC; Payseur BA; Bourque G; Lopez-Otin C; Puente XS; Chakrabarti K; Chatterji S; Dewey C; Pachter L; Bray N; Yap VB; Caspi A; Tesler G; Pevzner PA; Haussler D; Roskin KM; Baertsch R; Clawson H; Furey TS; Hinrichs AS; Karolchik D; Kent WJ; Rosenbloom KR; Trumbower H; Weirauch M; Cooper DN; Stenson PD; Ma B; Brent M; Arumugam M; Shteynberg D; Copley RR; Taylor MS; Riethman H; Mudunuri U; Peterson J; Guyer M; Felsenfeld A; Old S; Mockrin S; Collins F Genome sequence of the Brown Norway rat yields insights into mammalian evolution | 4 | 11 |
49 | 1 | 63 | 10 2003 AMERICAN JOURNAL OF PSYCHIATRY 160(4):646-656
Tecott LH The genes and brains of mice and men | 1 | 10 |
50 | 1 | 119 | 173 2003 HUMAN MOLECULAR GENETICS 12(7):701-709
Emes RD; Goodstadt L; Winter EE; Ponting CP Comparison of the genomes of human and mouse lays the foundation of genome zoology | 7 | 10 |
# | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
51 | 1 | 35 | 255 2003 NUCLEIC ACIDS RESEARCH 31(10):2544-2552
Thanaraj TA; Clark F; Muilu J Conservation of human alternative splice events in mouse | 3 | 10 |
52 | 3 | 6 | 258 2003 NUCLEIC ACIDS RESEARCH 31(13):3525-3526
Bray N; Pachter L MAVID multiple alignment server | 6 | 10 |
53 | 1 | 66 | 278 2003 PLANT CELL 15(8):1749-1770
Toledo-Ortiz G; Huq E; Quail PH The Arabidopsis basic/helix-loop-helix transcription factor family | 0 | 10 |
54 | 2 | 79 | 317 2003 TRENDS IN GENETICS 19(6):330-338
Marais G Biased gene conversion: implications for genome and sex evolution | 3 | 10 |
55 | 1 | 15 | 25 2003 BIOCHEMICAL SOCIETY TRANSACTIONS 31():437-443
Schadt EE; Monks SA; Friend SH A new paradigm for drug discovery: integrating clinical, genetic, genomic and molecular phenotype data to identify drug targets | 0 | 9 |
56 | 1 | 21 | 122 2003 GENOME RESEARCH 13(1):81-90
Mullikin JC; Ning ZM The phusion assembler | 4 | 9 |
57 | 13 | 67 | 153 2003 GENOME RESEARCH 13(12):2507-2518
Margulies EH; Blanchette M; Haussler D; Green ED Identification and characterization of multi-species conserved sequences | 7 | 9 |
58 | 1 | 40 | 289 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(13):7672-7677
Pevzner P; Tesler G Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution | 5 | 9 |
59 | 4 | 28 | 291 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(20):11484-11489
Kent WJ; Baertsch R; Hinrichs A; Miller W; Haussler D Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes | 5 | 9 |
60 | 5 | 60 | 306 2003 SCIENCE 301(5634):793-797
Eichler EE; Sankoff D Structural dynamics of eukaryotic chromosome evolution | 5 | 9 |
# | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
61 | 1 | 41 | 4 2003 ACTA BIOCHIMICA POLONICA 50(1):81-102
Wlodawer A; Li M; Gustchina A; Oyama H; Dunn BM; Oda K Structural and enzymatic properties of the sedolisin family of serine-carboxyl peptidases | 0 | 8 |
62 | 4 | 42 | 193 2003 JOURNAL OF CLINICAL INVESTIGATION 111(8):1099-1106
Pennacchio LA; Rubin EM Comparative genomic tools and databases: providing insights into the human genome | 6 | 8 |
63 | 1 | 47 | 242 2003 NATURE IMMUNOLOGY 4(8):801-807
Iizuka K; Naidenko OV; Plougastel BFM; Fremont DH; Yokoyama WM Genetically linked C-type lectin-related ligands for the NKRP1 family of natural killer cell receptors | 1 | 8 |
64 | 3 | 118 | 280 2003 PLOS BIOLOGY 1(2):166-+
Stein LD; Bao ZR; Blasiar D; Blumenthal T; Brent MR; Chen NS; Chinwalla A; Clarke L; Clee C; Coghlan A; Coulson A; D'Eustachio P; Fitch DHA; Fulton LA; Fulton RE; Griffiths-Jones S; Harris TW; Hillier LW; Kamath R; Kuwabara PE; Mardis ER; Marra MA; Miner TL; Minx P; Mullikin JC; Plumb RW; Rogers J; Schein JE; Sohrmann M; Spieth J; Stajich JE; Wei CC; Willey D; Wilson RK; Durbin R; Waterston RH The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics | 4 | 8 |
65 | 3 | 37 | 7 2003 AMERICAN JOURNAL OF HUMAN GENETICS 73(4):823-834
Bailey JA; Liu G; Eichler EE An Alu transposition model for the origin and expansion of human segmental duplications | 3 | 7 |
66 | 2 | 104 | 28 2003 BIOESSAYS 25(10):930-939
Mattick JS Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms | 1 | 7 |
67 | 2 | 26 | 145 2003 GENOME RESEARCH 13(7):1631-1637
Sorek R; Ast G Intronic sequences flanking alternatively spliced exons are conserved between human and mouse | 4 | 7 |
68 | 1 | 31 | 286 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(7):3883-3888
Moore JB; Blanchard RK; Cousins RJ Dietary zinc modulates gene expression in murine thymus: Results from a comprehensive differential display screening | 0 | 7 |
69 | 3 | 49 | 350 2004 CELL 116(4):499-509
Cawley S; Bekiranov S; Ng HH; Kapranov P; Sekinger EA; Kampa D; Piccolboni A; Sementchenko V; Cheng J; Williams AJ; Wheeler R; Wong B; Drenkow J; Yamanaka M; Patel S; Brubaker S; Tammana H; Helt G; Struhl K; Gingeras TR Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs | 1 | 7 |
70 | 1 | 44 | 111 2003 GENOME BIOLOGY 4(8):-
Cheung J; Wilson MD; Zhang JJ; Khaja R; MacDonald JR; Heng HHQ; Koop BF; Scherer SW Recent segmental and gene duplications in the mouse genome | 0 | 6 |
# | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
71 | 3 | 55 | 128 2003 GENOME RESEARCH 13(5):838-844
Subramanian S; Kumar S Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes | 4 | 6 |
72 | 1 | 18 | 141 2003 GENOME RESEARCH 13(6B):1505-1519
Baldarelli RM; Hill DP; Blake JA; Adachi J; Furuno M; Bradt D; Corbani LE; Cousins S; Frazer KS; Qi D; Yang LL; Ramachandran S; Reed D; Zhu YX; Kasukawa T; Ringwald M; King BL; Maltais LJ; McKenzie LM; Schriml LM; Maglott D; Church DM; Pruitt K; Eppig JT; Richardson JE; Kadin JA; Bult CJ Connecting sequence and biology in the laboratory mouse | 3 | 6 |
73 | 1 | 25 | 148 2003 GENOME RESEARCH 13(8):1966-1972
Larkin DM; Everts-van der Wind A; Rebeiz M; Schweitzer PA; Bachman S; Green C; Wright CL; Campos EJ; Benson LD; Edwards J; Liu L; Osoegawa K; Womack JE; de Jong PJ; Lewin HA A cattle-human comparative map built with cattle BAC-ends and human genome sequence | 2 | 6 |
74 | 1 | 97 | 253 2003 NATURE REVIEWS IMMUNOLOGY 3(3):243-252
Rogner UC; Avner P Congenic mice: Cutting tools for complex immune disorders | 1 | 6 |
75 | 1 | 27 | 264 2003 NUCLEIC ACIDS RESEARCH 31(18):5338-5348
Zhang ZL; Gerstein M Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes | 4 | 6 |
76 | 1 | 9 | 284 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(6):3022-3024
Waterston RH; Lander ES; Sulston JE More on the sequencing of the human genome | 3 | 6 |
77 | 1 | 36 | 36 2003 CANCER RESEARCH 63(12):3317-3324
Wang M; Lemon WJ; Liu GJ; Wang Y; Iraqi FA; Malkinson AM; You M Fine mapping and identification of candidate pulmonary adenoma susceptibility 1 genes using advanced intercross lines | 0 | 5 |
78 | 1 | 47 | 109 2003 GENOME BIOLOGY 4(7):-
Brachat S; Dietrich FS; Voegeli S; Zhang ZH; Stuart L; Lerch A; Gates K; Gaffney T; Philippsen P Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii | 0 | 5 |
79 | 1 | 78 | 172 2003 HUMAN MOLECULAR GENETICS 12():R221-R227
Kriaucionis S; Bird A DNA methylation and Rett syndrome | 0 | 5 |
80 | 2 | 139 | 238 2003 NATURE GENETICS 33():219-227
Venter JC; Levy S; Stockwell T; Remington K; Halpern A Massive parallelism, randomness and genomic advances | 2 | 5 |
# | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
81 | 1 | 111 | 244 2003 NATURE REVIEWS GENETICS 4(3):195-205
Buer J; Balling R Mice, microbes and models of infection | 0 | 5 |
82 | 1 | 28 | 296 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(24):14109-14114
Zambrowicz BP; Abuin A; Ramirez-Solis R; Richter LJ; Piggott J; BeltrandelRio H; Buxton EC; Edwards J; Finch RA; Friddle CJ; Gupta A; Hansen G; Hu Y; Huang WH; Jaing C; Key BW; Kipp P; Kohlhauff B; Ma ZQ; Markesich D; Payne R; Potter DG; Qian N; Shaw J; Schrick J; Shi ZZ; Sparks MJ; Van Sligtenhorst I; Vogel P; Walke W; Xu NH; Zhu QC; Person C; Sands AT Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention | 1 | 5 |
83 | 5 | 37 | 456 2004 JOURNAL OF PHYSIOLOGY-LONDON 554(1):31-39
Nobrega MA; Pennacchio LA Comparative genomic analysis as a tool for biological discovery | 1 | 5 |
84 | 1 | 91 | 41 2003 CIRCULATION RESEARCH 92(9):953-961
Winslow RL; Boguski MS Genome informatics - Current status and future prospects | 0 | 4 |
85 | 1 | 247 | 45 2003 CRITICAL REVIEWS IN IMMUNOLOGY 23(3):199-250
Glant TT; Finnegan A; Mikecz K Proteoglycan-induced arthritis: Immune regulation, cellular mechanisms, and genetics | 0 | 4 |
86 | 8 | 46 | 51 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):562-568
Ellegren H; Smith NGC; Webster MT Mutation rate variation in the mammalian genome | 3 | 4 |
87 | 1 | 24 | 77 2003 DNA RESEARCH 10(1):35-48
Okazaki N; Kikuno R; Ohara R; Inamoto S; Aizawa H; Yuasa S; Nakajima D; Nagase T; Ohara O; Koga H Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries | 3 | 4 |
88 | 1 | 19 | 84 2003 ENVIRONMENTAL HEALTH PERSPECTIVES 111(15):1835-1842
Wang HY; Donley KM; Keeney DS; Hoffman SMG Organization and evolution of the Cyp2 gene cluster on mouse chromosome 7, and comparison with the syntenic human cluster | 1 | 4 |
89 | 1 | 40 | 85 2003 EPILEPSIA 44():16-21
Noebels JL Exploring new gene discoveries in idiopathic generalized epilepsy | 0 | 4 |
90 | 1 | 64 | 92 2003 FUNGAL GENETICS AND BIOLOGY 39(3):250-263
Silar P; Barreau C; Debuchy R; Kicka S; Turcq B; Sainsard-Chanet A; Sellem CH; Billault A; Cattolico L; Duprat S; Weissenbach J Characterization of the genomic organization of the region bordering the centromere of chromosome V of Podospora anserina by direct sequencing | 0 | 4 |
# | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
91 | 1 | 36 | 112 2003 GENOME BIOLOGY 4(8):-
Locke DP; Archidiacono N; Misceo D; Cardone MF; Deschamps S; Roe B; Rocchi M; Eichler EE Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster | 0 | 4 |
92 | 3 | 34 | 126 2003 GENOME RESEARCH 13(4):732-741
Giardine B; Elnitski L; Riemer C; Makalowska L; Schwartz S; Miller W; Hardison RC GALA, a database for genomic sequence alignments and annotations | 2 | 4 |
93 | 1 | 93 | 129 2003 GENOME RESEARCH 13(6):1029-1041
O'Brien TP; Bult CJ; Cremer C; Grunze M; Knowles BB; Langowski J; McNally J; Pederson T; Politz JC; Pombo A; Schmahl G; Spatz JP; van Driel R Genome function and nuclear architecture: From gene expression to nanoscience | 0 | 4 |
94 | 2 | 96 | 154 2003 GENOME RESEARCH 13(12):2541-2558
Zhang ZL; Harrison PM; Liu Y; Gerstein M Millions of years of evolution preserved: A comprehensive catalog of the processed pseudogenes in the human genome | 1 | 4 |
95 | 2 | 32 | 155 2003 GENOME RESEARCH 13(12):2559-2567
Torrents D; Suyama M; Zdobnov E; Bork P A genome-wide survey of human pseudogenes | 1 | 4 |
96 | 1 | 57 | 263 2003 NUCLEIC ACIDS RESEARCH 31(16):4929-4940
Yang N; Zhang L; Zhang Y; Kazazian HH An important role for RUNX3 in human L1 transcription and retrotransposition | 1 | 4 |
97 | 1 | 107 | 272 2003 PHYSIOLOGICAL GENOMICS 13(1):15-24
Barr MM Super models | 2 | 4 |
98 | 1 | 37 | 290 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(17):10043-10048
Zylka MJ; Dong XZ; Southwell AL; Anderson DJ Atypical expansion in mice of the sensory neuronspecific Mrg G protein-coupled receptor family | 0 | 4 |
99 | 3 | 52 | 519 2004 PHARMACOGENETICS 14(1):1-18
Nelson DR; Zeldin DC; Hoffman SMG; Maltais LJ; Wain HM; Nebert DW Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants | 0 | 4 |
100 | 1 | 45 | 21 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 309(4):709-717
Roskoski R STI-571: an anticancer protein-tyrosine kinase inhibitor | 0 | 3 |
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