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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al. NATURE 420 (6915): 520-562 DEC 5 2002 and the citing papers |
Nodes: 549
Authors: 2932,
Journals: 196,
Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by LCR.
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| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
|---|---|---|---|---|---|
| 1 | 43 | 226 | 485 2004 NATURE 428(6982):493-521
Gibbs RA; Weinstock GM; Metzker ML; Muzny DM; Sodergren EJ; Scherer S; Scott G; Steffen D; Worley KC; Burch PE; Okwuonu G; Hines S; Lewis L; DeRamo C; Delgado O; Dugan-Rocha S; Miner G; Morgan M; Hawes A; Gill R; Holt RA; Adams MD; Amanatides PG; Baden-Tillson H; Barnstead M; Chin S; Evans CA; Ferriera S; Fosler C; Glodek A; Gu ZP; Jennings D; Kraft CL; Nguyen T; Pfannkoch CM; Sitter C; Sutton GG; Venter JC; Woodage T; Smith D; Lee HM; Gustafson E; Cahill P; Kana A; Doucette-Stamm L; Weinstock K; Fechtel K; Weiss RB; Dunn DM; Green ED; Blakesley RW; Bouffard GG; de Jong J; Osoegawa K; Zhu BL; Marra M; Schein J; Bosdet I; Fjell C; Jones S; Krzywinski M; Mathewson C; Siddiqui A; Wye N; McPherson J; Zhao SY; Fraser CM; Shetty J; Shatsman S; Geer K; Chen YX; Abramzon S; Nierman WC; Gibbs RA; Weinstock GM; Havlak PH; Chen R; Durbin KJ; Egan A; Ren YR; Song XZ; Li BS; Liu Y; Qin X; Cawley S; Weinstock GM; Worley KC; Cooney AJ; Gibbs RA; D'Souza LM; Martin K; Wu JQ; Gonzalez-Garay ML; Jackson AR; Kalafus KJ; McLeod MP; Milosavljevic A; Virk D; Volkov A; Wheeler DA; Zhang ZD; Bailey JA; Eichler EE; Tuzun E; Birney E; Mongin E; Ureta-Vidal A; Woodwark C; Zdobnov E; Bork P; Suyama M; Torrents D; Alexandersson M; Trask BJ; Young JM; Smith D; Huang H; Fechtel K; Wang HJ; Xing HM; Weinstock K; Daniels S; Gietzen D; Schmidt J; Stevens K; Vitt U; Wingrove J; Camara F; Schmidt J; Stevens K; Vitt U; Wingrove J; Camara F; Alba MM; Abril JF; Guigo R; Smit A; Dubchak I; Rubin EM; Couronne O; Poliakov A; Hubner N; Ganten D; Goesele C; Hummel O; Kreitler T; Lee YA; Monti J; Schulz H; Zimdahl H; Himmelbauer H; Lehrach H; Jacob HJ; Bromberg S; Gullings-Handley J; Jensen-Seaman MI; Kwitek AE; Lazar J; Pasko D; Tonellato PJ; Twigger S; Ponting P; Duarte JM; Rice S; Goodstadt L; Beatson SA; Emes RD; Winter EE; Webber C; Brandt P; Nyakatura G; Adetobi M; Chiaromonte F; Elnitski L; Eswara P; Hardison RC; Hou MM; Kolbe D; Makova K; Miller W; Nekrutenko A; Riemer C; Schwartz S; Taylor J; Yang S; Zhang Y; Lindpaintner K; Andrews TD; Caccamo M; Clamp M; Clarke L; Curwen V; Durbin R; Eyras E; Searle SM; Cooper GM; Batzoglou S; Brudno M; Sidow A; Stone EA; Venter JC; Payseur BA; Bourque G; Lopez-Otin C; Puente XS; Chakrabarti K; Chatterji S; Dewey C; Pachter L; Bray N; Yap VB; Caspi A; Tesler G; Pevzner PA; Haussler D; Roskin KM; Baertsch R; Clawson H; Furey TS; Hinrichs AS; Karolchik D; Kent WJ; Rosenbloom KR; Trumbower H; Weirauch M; Cooper DN; Stenson PD; Ma B; Brent M; Arumugam M; Shteynberg D; Copley RR; Taylor MS; Riethman H; Mudunuri U; Peterson J; Guyer M; Felsenfeld A; Old S; Mockrin S; Collins F Genome sequence of the Brown Norway rat yields insights into mammalian evolution | 4 | 11 |
| 2 | 14 | 44 | 115 2003 GENOME BIOLOGY 4(12):-
Dubchak I; Frazer K Multi-species sequence comparison: the next frontier in genome annotation | 0 | 1 |
| 3 | 13 | 67 | 153 2003 GENOME RESEARCH 13(12):2507-2518
Margulies EH; Blanchette M; Haussler D; Green ED Identification and characterization of multi-species conserved sequences | 7 | 9 |
| 4 | 13 | 86 | 504 2004 NATURE REVIEWS GENETICS 5(6):456-465
Boffelli D; Nobrega MA; Rubin EM Comparative genomics at the vertebrate extremes | 0 | 0 |
| 5 | 12 | 37 | 536 2004 SCIENCE 304(5675):1321-1325
Bejerano G; Pheasant M; Makunin I; Stephen S; Kent WJ; Mattick JS; Haussler D Ultraconserved elements in the human genome | 0 | 0 |
| 6 | 10 | 32 | 422 2004 GENOME RESEARCH 14(5):852-859
Dermitzakis ET; Kirkness E; Schwarz S; Birney E; Reymond A; Antonarakis SE Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment | 1 | 1 |
| 7 | 10 | 98 | 498 2004 NATURE REVIEWS GENETICS 5(4):276-287
Wasserman WW; Sandelin A Applied bioinformatics for the identification of regulatory elements | 1 | 1 |
| 8 | 9 | 33 | 279 2003 PLOS BIOLOGY 1(2):156-160
Hardison RC Comparative genomics | 0 | 0 |
| 9 | 9 | 21 | 337 2004 BIOINFORMATICS 20(5):636-U122
Shah N; Couronne O; Pennacchio LA; Brudno M; Batzoglou S; Bethel EW; Rubin EM; Hamann B; Dubchak I Phylo-VISTA: interactive visualization of multiple DNA sequence alignments | 0 | 0 |
| 10 | 8 | 46 | 51 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):562-568
Ellegren H; Smith NGC; Webster MT Mutation rate variation in the mammalian genome | 3 | 4 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 11 | 8 | 34 | 269 2003 PHARMACOGENOMICS 4(5):571-582
Cheng JF; Pennacchio LA Comparative and functional analysis of cardiovascular-related genes | 0 | 0 |
| 12 | 8 | 65 | 343 2004 BMC BIOINFORMATICS 5():-
Pollard DA; Bergman CM; Stoye J; Celniker SE; Eisen MB Benchmarking tools for the alignment of functional noncoding DNA | 0 | 1 |
| 13 | 8 | 36 | 385 2004 GENOME BIOLOGY 5(4):-
Bailey JA; Baertsch R; Kent WJ; Haussler D; Eichler EE Hotspots of mammalian chromosomal evolution | 0 | 0 |
| 14 | 8 | 51 | 419 2004 GENOME RESEARCH 14(5):789-801
Bailey JA; Church DM; Ventura M; Rocchi M; Eichler EE Analysis of segmental duplications and genome assembly in the mouse | 0 | 0 |
| 15 | 8 | 80 | 499 2004 NATURE REVIEWS GENETICS 5(4):316-323
Mattick JS RNA regulation: a new genetics? | 0 | 1 |
| 16 | 7 | 46 | 52 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):604-610
Cooper GM; Sidow A Genomic regulatory regions: insights from comparative sequence analysis | 1 | 1 |
| 17 | 7 | 61 | 53 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):611-616
Li H; Wang W Dissecting the transcription networks of a cell using computational genomics | 0 | 0 |
| 18 | 7 | 125 | 381 2004 GENOME BIOLOGY 5(1):-
Bulyk ML Computational prediction of transcription-factor binding site locations | 0 | 0 |
| 19 | 7 | 29 | 400 2004 GENOME RESEARCH 14(4):539-548
Cooper GM; Brudno M; Stone EA; Dubchak I; Batzoglou S; Sidow A Characterization of evolutionary rates and constraints in three mammalian genomes | 2 | 2 |
| 20 | 7 | 26 | 412 2004 GENOME RESEARCH 14(4):685-692
Brudno M; Poliakov A; Salamov A; Cooper GM; Sidow A; Rubin EM; Solovyev V; Batzoglou S; Dubchak I Automated whole-genome multiple alignment of rat, mouse, and human | 1 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 21 | 7 | 26 | 414 2004 GENOME RESEARCH 14(4):708-715
Blanchette M; Kent WJ; Riemer C; Elnitski L; Smit AFA; Roskin KM; Baertsch R; Rosenbloom K; Clawson H; Green ED; Haussler D; Miller W Aligning multiple genomic sequences with the threaded blockset aligner | 1 | 1 |
| 22 | 7 | 60 | 488 2004 NATURE 429(6990):440-445
Bentley DR Genomes for medicine | 0 | 0 |
| 23 | 7 | 78 | 529 2004 PROTEOMICS 4(6):1712-1726
Southan C Has the yo-yo stopped? - An assessment of human protein-coding gene number | 0 | 0 |
| 24 | 6 | 39 | 251 2003 NATURE REVIEWS GENETICS 4(9):741-749
Wang J; Li ST; Zhang Y; Zheng HK; Xu Z; Ye J; Yu J; Wong GKS Vertebrate gene predictions and the problem of large genes | 0 | 0 |
| 25 | 6 | 42 | 426 2004 GENOME RESEARCH 14(6):1191-1198
Ovcharenko I; Boffelli D; Loots GG EShadow: A tool for comparing closely related sequences | 0 | 0 |
| 26 | 6 | 31 | 524 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(7):1916-1921
Istrail S; Sutton GG; Florea L; Halpern AL; Mobarry CM; Lippert R; Walenz B; Shatkay H; Dew I; Miller JR; Flanigan MJ; Edwards NJ; Bolanos R; Fasulo D; Halldorsson BV; Hannenhalli S; Turner R; Yooseph S; Lu F; Nusskern DR; Shue BC; Zheng XQH; Zhong F; Delcher AL; Huson DH; Kravitz SA; Mouchard L; Reinert K; Remington KA; Clark AG; Waterman MS; Eichler EE; Adams MD; Hunkapiller MW; Myers EW; Venter JC Whole-genome shotgun assembly and comparison of human genome assemblies | 0 | 0 |
| 27 | 5 | 47 | 55 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):623-628
Copley RR; Goodstadt L; Ponting C Eukaryotic domain evolution inferred from genome comparisons | 1 | 2 |
| 28 | 5 | 100 | 245 2003 NATURE REVIEWS GENETICS 4(4):251-262
Ureta-Vidal A; Ettwiller L; Birney E Comparative genomics: Genome-wide analysis in metazoan eukaryotes | 12 | 22 |
| 29 | 5 | 45 | 257 2003 NUCLEIC ACIDS RESEARCH 31(13):3518-3524
Schwartz S; Elnitski L; Li M; Weirauch M; Riemer C; Smit A; Program NCS; Green ED; Hardison RC; Miller W MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences | 7 | 14 |
| 30 | 5 | 60 | 306 2003 SCIENCE 301(5634):793-797
Eichler EE; Sankoff D Structural dynamics of eukaryotic chromosome evolution | 5 | 9 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 31 | 5 | 6 | 309 2003 SCIENCE 302(5647):997-+
Johnston M; Stormo GD Heirlooms in the attic | 0 | 0 |
| 32 | 5 | 47 | 391 2004 GENOME RESEARCH 14(2):273-279
Halligan DL; Eyre-Walker A; Andolfatto P; Keightley PD Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila | 1 | 1 |
| 33 | 5 | 21 | 392 2004 GENOME RESEARCH 14(3):367-372
Frazer KA; Tao H; Osoegawa K; de Jong PJ; Chen XY; Doherty MF; Cox DR Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional | 3 | 3 |
| 34 | 5 | 32 | 397 2004 GENOME RESEARCH 14(4):507-516
Bourque G; Pevzner PA; Tesler G Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse, and rat genomes | 1 | 1 |
| 35 | 5 | 45 | 398 2004 GENOME RESEARCH 14(4):517-527
Yang S; Smit AF; Schwartz S; Chiaromonte F; Roskin KM; Haussler D; Miller W; Hardison RC Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes | 1 | 1 |
| 36 | 5 | 70 | 399 2004 GENOME RESEARCH 14(4):528-538
Jensen-Seaman MI; Furey TS; Payseur BA; Lu YT; Roskin KM; Chen CF; Thomas MA; Haussler D; Jacob HJ Comparative recombination rates in the rat, mouse, and human genomes | 1 | 1 |
| 37 | 5 | 15 | 404 2004 GENOME RESEARCH 14(4):574-579
Yap VB; Pachter L Identification of evolutionary hotspots in the rodent genomes | 1 | 1 |
| 38 | 5 | 17 | 409 2004 GENOME RESEARCH 14(4):661-664
Dewey C; Wu JQ; Cawley S; Alexandersson M; Gibbs R; Pachter L Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat | 1 | 1 |
| 39 | 5 | 39 | 415 2004 GENOME RESEARCH 14(4):721-732
Havlak P; Chen R; Durbin KJ; Egan A; Ren YR; Song XZ; Weinstock GM; Gibbs RA The atlas genome assembly system | 1 | 2 |
| 40 | 5 | 196 | 443 2004 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37(1):93-106
Castrillo JO; Oliver SG Yeast as a touchstone in post-genomic research: Strategies for integrative analysis in functional genomics | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 41 | 5 | 37 | 456 2004 JOURNAL OF PHYSIOLOGY-LONDON 554(1):31-39
Nobrega MA; Pennacchio LA Comparative genomic analysis as a tool for biological discovery | 1 | 5 |
| 42 | 5 | 100 | 496 2004 NATURE REVIEWS GENETICS 5(3):202-212
Andersson L; Georges M Domestic-animal genomics: deciphering the genetics of complex traits | 0 | 2 |
| 43 | 5 | 73 | 501 2004 NATURE REVIEWS GENETICS 5(5):345-354
Eichler EE; Clark RA; She XW An assessment of the sequence gaps: Unfinished business in a finished human genome | 0 | 0 |
| 44 | 5 | 9 | 509 2004 NUCLEIC ACIDS RESEARCH 32():D493-D496
Karolchik D; Hinrichs AS; Furey TS; Roskin KM; Sugnet CW; Haussler D; Kent WJ The UCSC Table Browser data retrieval tool | 0 | 0 |
| 45 | 5 | 84 | 535 2004 SCIENCE 303(5664):1626-1632
Kazazian HH Mobile elements: Drivers of genome evolution | 0 | 3 |
| 46 | 5 | 39 | 541 2004 TRENDS IN BIOTECHNOLOGY 22(4):161-167
Hayashizaki Y; Kanamori M Dynamic transcriptome of mice | 0 | 0 |
| 47 | 4 | 85 | 38 2003 CELLULAR MICROBIOLOGY 5(12):861-873
Carlton JM Genome sequencing and comparative genomics of tropical disease pathogens | 0 | 0 |
| 48 | 4 | 42 | 193 2003 JOURNAL OF CLINICAL INVESTIGATION 111(8):1099-1106
Pennacchio LA; Rubin EM Comparative genomic tools and databases: providing insights into the human genome | 6 | 8 |
| 49 | 4 | 57 | 206 2003 MAMMALIAN GENOME 14(7):429-436
Pennacchio LA Insights from human/mouse genome comparisons | 0 | 0 |
| 50 | 4 | 30 | 234 2003 NATURE 424(6950):788-793
Thomas JW; Touchman JW; Blakesley RW; Bouffard GG; Beckstrom-Sternberg SM; Margulies EH; Blanchette M; Siepel AC; Thomas PJ; McDowell JC; Maskeri B; Hansen NF; Schwartz MS; Weber RJ; Kent WJ; Karolchik D; Bruen TC; Bevan R; Cutler DJ; Schwartz S; Elnitski L; Idol JR; Prasad AB; Lee-Lin SQ; Maduro VVB; Summers TJ; Portnoy ME; Dietrich NL; Akhter N; Ayele K; Benjamin B; Cariaga K; Brinkley CP; Brooks SY; Granite S; Guan X; Gupta J; Haghighi P; Ho SL; Huang MC; Karlins E; Laric PL; Legaspi R; Lim MJ; Maduro QL; Masiello CA; Mastrian SD; McCloskey JC; Pearson R; Stantripop S; Tiongson EE; Tran JT; Tsurgeon C; Vogt JL; Walker MA; Wetherby KD; Wiggins LS; Young AC; Zhang LH; Osoegawa K; Zhu B; Zhao B; Shu CL; De Jong PJ; Lawrence CE; Smit AF; Chakravarti A; Haussler D; Green P; Miller W; Green ED Comparative analyses of multi-species sequences from targeted genomic regions | 35 | 50 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 51 | 4 | 28 | 291 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(20):11484-11489
Kent WJ; Baertsch R; Hinrichs A; Miller W; Haussler D Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes | 5 | 9 |
| 52 | 4 | 18 | 307 2003 SCIENCE 301(5641):1854-1855
O'Brien SJ; Murphy WJ A dog's breakfast? | 0 | 1 |
| 53 | 4 | 24 | 310 2003 SCIENCE 302(5647):1033-1035
Dermitzakis ET; Reymond A; Scamuffa N; Ucla C; Kirkness E; Rossier C; Antonarakis SE Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs) | 9 | 12 |
| 54 | 4 | 27 | 336 2004 BIOINFORMATICS 20(2):148-154
Liu L; Gong G; Liu Y; Natarajan S; Larkin DM; Everts-van der Wind A; Rebeiz M; Beever JE Multi-species comparative mapping in silico using the COMPASS strategy | 0 | 0 |
| 55 | 4 | 79 | 380 2004 GENETICS 167(1):423-437
Nachman MW; D'Agostino SL; Tillquist CR; Mobasher Z; Hammer MF Nucleotide variation at Msn and Alas2, two genes flanking the centromere of the X chromosome in humans | 0 | 0 |
| 56 | 4 | 34 | 383 2004 GENOME BIOLOGY 5(2):-
Kurtz S; Phillippy A; Delcher AL; Smoot M; Shumway M; Antonescu C; Salzberg SL Versatile and open software for comparing large genomes | 0 | 0 |
| 57 | 4 | 26 | 393 2004 GENOME RESEARCH 14(3):442-450
Keightley PD; Johnson T MCALIGN: Stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution | 0 | 0 |
| 58 | 4 | 32 | 394 2004 GENOME RESEARCH 14(3):451-458
Liu YY; Liu XS; Wei LP; Altman RB; Batzoglou S Eukaryotic regulatory element conservation analysis and identification using comparative genomics | 0 | 0 |
| 59 | 4 | 36 | 396 2004 GENOME RESEARCH 14(4):493-506
Tuzun E; Bailey JA; Eichler EE Recent segmental duplications in the working draft assembly of the brown Norway rat | 3 | 3 |
| 60 | 4 | 44 | 403 2004 GENOME RESEARCH 14(4):567-573
Makova KD; Yang S; Chiaromonte F Insertions and deletions are male biased too: A whole-genome analysis in rodents | 1 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 61 | 4 | 22 | 410 2004 GENOME RESEARCH 14(4):672-678
Kalafus KJ; Jackson AR; Milosavljevic A Pash: Efficient genome-scale sequence anchoring by positional hashing | 1 | 1 |
| 62 | 4 | 27 | 425 2004 GENOME RESEARCH 14(5):988-995
Birney E; Clamp M; Durbin R GeneWise and genomewise | 0 | 0 |
| 63 | 4 | 48 | 434 2004 GENOMICS 83(4):694-705
Long LY; Davidson JN; Spear BT Striking differences between the mouse and the human alpha-fetoprotein enhancers | 0 | 0 |
| 64 | 4 | 5 | 439 2004 HEREDITY 92(5):363-364
Bofkin L; Whelan S Functional needles in a genomic haystack | 0 | 0 |
| 65 | 4 | 77 | 472 2004 MOLECULAR BIOLOGY AND EVOLUTION 21(3):468-488
Siepel A; Haussler D Phylogenetic estimation of context-dependent substitution rates by maximum likelihood | 0 | 0 |
| 66 | 4 | 89 | 476 2004 MOLECULAR BIOLOGY AND EVOLUTION 21(6):1014-1023
Chamary JV; Hurst LD Similar rates but different modes of sequence evolution in introns and at exonic silent sites in rodents: Evidence for selectively driven codon usage | 0 | 0 |
| 67 | 4 | 56 | 478 2004 MOLECULAR CELL 14(2):221-231
Sorek R; Lev-Maor G; Reznik M; Dagan T; Belinky F; Graur D; Ast G Minimal conditions for exonization of intronic sequences: 5 ' splice site formation in Alu exons | 0 | 1 |
| 68 | 4 | 46 | 487 2004 NATURE 429(6990):382-388
Watanabe H; Fujiyama A; Hattori M; Taylor TD; Toyoda A; Kuroki Y; Noguchi H; BenKahla A; Lehrach H; Sudbrak R; Kube M; Taenzer S; Galgoczy P; Platzer M; Scharfe M; Nordsiek G; Blocker HB; Hellmann I; Khaitovich P; Paabo S; Reinhardt R; Zheng HJ; Zhang XL; Zhu GF; Wang BF; Fu G; Ren SX; Zhao GP; Chen Z; Lee YS; Cheong JE; Choi SH; Wu KM; Liu TT; Hsiao KJ; Tsai SF; Kim CG; Oota S; Kitano T; Kohara Y; Saitou N; Park HS; Wang SY; Yaspo ML; Sakaki Y DNA sequence and comparative analysis of chimpanzee chromosome 22 | 0 | 1 |
| 69 | 4 | 62 | 493 2004 NATURE REVIEWS GENETICS 5(1):43-51
Schaffner SF The X chromosome in population genetics | 0 | 0 |
| 70 | 4 | 134 | 503 2004 NATURE REVIEWS GENETICS 5(6):435-445
Ellegren H Microsatellites: Simple sequences with complex evolution | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 71 | 4 | 22 | 522 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(4):992-997
Crawford GE; Holt IE; Mullikin JC; Tai D; Green ED; Wolfsberg TG; Collins FS Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites | 0 | 0 |
| 72 | 4 | 36 | 544 2004 TRENDS IN GENETICS 20(2):62-67
Zhang ZL; Carriero N; Gerstein M Comparative analysis of processed pseudogenes in the mouse and human genomes | 0 | 0 |
| 73 | 4 | 19 | 545 2004 TRENDS IN GENETICS 20(5):229-232
Semon M; Duret L Evidence that functional transcription units cover at least half of the human genome | 0 | 0 |
| 74 | 3 | 37 | 7 2003 AMERICAN JOURNAL OF HUMAN GENETICS 73(4):823-834
Bailey JA; Liu G; Eichler EE An Alu transposition model for the origin and expansion of human segmental duplications | 3 | 7 |
| 75 | 3 | 26 | 27 2003 BIOCHEMICAL SOCIETY TRANSACTIONS 31():806-809
Bingle CD; Craven CJ Comparative analysis of the PLUNC (palate, lung and nasal epithelium clone) protein families | 1 | 2 |
| 76 | 3 | 56 | 54 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):617-622
Swanson WJ Adaptive evolution of genes and gene families | 0 | 2 |
| 77 | 3 | 19 | 108 2003 GENOME BIOLOGY 4(4):-
Rossant J; Scherer SW The mouse genome sequence - the end of the tail, or just the beginning? | 0 | 0 |
| 78 | 3 | 34 | 126 2003 GENOME RESEARCH 13(4):732-741
Giardine B; Elnitski L; Riemer C; Makalowska L; Schwartz S; Miller W; Hardison RC GALA, a database for genomic sequence alignments and annotations | 2 | 4 |
| 79 | 3 | 55 | 128 2003 GENOME RESEARCH 13(5):838-844
Subramanian S; Kumar S Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes | 4 | 6 |
| 80 | 3 | 5 | 169 2003 HEREDITY 91(6):533-534
Furlong RF; Yang ZH Comparative genomics - Comparative genomics coming of age | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 81 | 3 | 28 | 177 2003 HUMAN MOLECULAR GENETICS 12(17):2201-2208
Armengol L; Pujana MA; Cheung J; Scherer SW; Estivill X Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements | 3 | 3 |
| 82 | 3 | 59 | 195 2003 JOURNAL OF DENTAL RESEARCH 82(12):944-950
LeClair EE Four reasons to consider a novel class of innate immune molecules in the oral epithelium | 0 | 0 |
| 83 | 3 | 26 | 221 2003 MOLECULAR BIOLOGY AND EVOLUTION 20(8):1299-1309
Shih ACC; Li WH GS-aligner: A novel tool for aligning genomic sequences using bit-level operations | 0 | 1 |
| 84 | 3 | 13 | 256 2003 NUCLEIC ACIDS RESEARCH 31(13):3507-3509
Cawley S; Pachter L; Alexandersson M SLAM web server for comparative gene finding and alignment | 0 | 1 |
| 85 | 3 | 6 | 258 2003 NUCLEIC ACIDS RESEARCH 31(13):3525-3526
Bray N; Pachter L MAVID multiple alignment server | 6 | 10 |
| 86 | 3 | 118 | 280 2003 PLOS BIOLOGY 1(2):166-+
Stein LD; Bao ZR; Blasiar D; Blumenthal T; Brent MR; Chen NS; Chinwalla A; Clarke L; Clee C; Coghlan A; Coulson A; D'Eustachio P; Fitch DHA; Fulton LA; Fulton RE; Griffiths-Jones S; Harris TW; Hillier LW; Kamath R; Kuwabara PE; Mardis ER; Marra MA; Miner TL; Minx P; Mullikin JC; Plumb RW; Rogers J; Schein JE; Sohrmann M; Spieth J; Stajich JE; Wei CC; Willey D; Wilson RK; Durbin R; Waterston RH The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics | 4 | 8 |
| 87 | 3 | 39 | 283 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(3):1140-1145
Guigo R; Dermitzakis ET; Agarwal P; Ponting CP; Parra G; Reymond A; Abril JF; Keibler E; Lyle R; Ucla C; Antonarakis SE; Brent MR Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes | 10 | 17 |
| 88 | 3 | 6 | 303 2003 SCIENCE 299(5611):1331-1333
Gibbs RA; Nelson DL Primate shadow play | 0 | 0 |
| 89 | 3 | 51 | 335 2004 ANNUAL REVIEW OF MEDICINE 55():1-13
Austin CP The impact of the completed human genome sequence on the development of novel therapeutics for human disease | 0 | 0 |
| 90 | 3 | 26 | 339 2004 BIOINFORMATICS 20(7):1053-1059
Choi KP; Zeng FF; Zhang LX Good spaced seeds for homology search | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 91 | 3 | 21 | 344 2004 BMC EVOLUTIONARY BIOLOGY 4():-
Kendal WS A scale invariant clustering of genes on human chromosome 7 | 0 | 0 |
| 92 | 3 | 113 | 348 2004 CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE 26(1):19-30
Hsiang T; Baillie DL Recent progress, developments, and issues in comparative fungal genomics | 0 | 0 |
| 93 | 3 | 49 | 350 2004 CELL 116(4):499-509
Cawley S; Bekiranov S; Ng HH; Kapranov P; Sekinger EA; Kampa D; Piccolboni A; Sementchenko V; Cheng J; Williams AJ; Wheeler R; Wong B; Drenkow J; Yamanaka M; Patel S; Brubaker S; Tammana H; Helt G; Struhl K; Gingeras TR Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs | 1 | 7 |
| 94 | 3 | 87 | 379 2004 GENETICS 167(1):377-385
Sundstrom H; Webster MT; Ellegren H Reduced variation on the chicken Z chromosome | 0 | 0 |
| 95 | 3 | 73 | 386 2004 GENOME BIOLOGY 5(4):-
Shabalina SA; Spiridonov NA The mammalian transcriptome and the function of non-coding DNA sequences | 0 | 0 |
| 96 | 3 | 32 | 395 2004 GENOME RESEARCH 14(3):463-471
Porcel BM; Delfour O; Castelli V; De Berardinis V; Friedlander L; Cruaud C; Ureta-Vidal A; Scarpelli C; Wincker P; Schachter V; Saurin W; Gyapay G; Salanoubat M; Weissenbach J Numerous novel annotations of the human genome sequence supported by a 5 '-end-enriched cDNA collection | 0 | 0 |
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Taylor MS; Ponting CP; Copley RR Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes | 1 | 1 |
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Lane RP; Young J; Newman T; Trask BJ Species specificity in rodent pheromone receptor repertoires | 0 | 0 |
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Kolbe D; Taylor J; Elnitski L; Eswara P; Li J; Miller W; Hardison R; Chiaromonte F Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat | 1 | 1 |
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Wilder SP; Bihoreau MT; Argoud K; Watanabe TK; Lathrop M; Gauguier D Integration of the rat recombination and EST maps in the rat genomic sequence and comparative mapping analysis with the mouse genome | 0 | 0 |
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