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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
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#LCRNCRNodes / Authors / DateLCSGCS
101116134 2003 JUN [15] GENOME RESEARCH 13(6B):1360-1365
Wells CA; Ravasi T; Sultana R; Yagi K; Carninci P; Bono H; Faulkner G; Okazaki Y; Quackenbush J; Hume DA; Lyons PA
Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage
02
102136135 2003 JUN [15] GENOME RESEARCH 13(6B):1366-1375
Forrest ARR; Taylor D; Grimmond S
Exploration of the cell-cycle genes found within the RIKEN FANTOM2 data set
00
103137136 2003 JUN [15] GENOME RESEARCH 13(6B):1455-1465
Miki H; Setou M; Hirokawa N
Kinesin superfamily proteins (KIFs) in the mouse transcriptome
03
104262137 2003 JUN [15] GENOME RESEARCH 13(6B):1466-1477
Kawasawa Y; McKenzie LM; Hill DP; Bono H; Yanagisawa M
G protein-coupled receptor genes in the FANTOM2 database
01
105110138 2003 JUN [15] GENOME RESEARCH 13(6B):1478-1487
Furuno M; Kasukawa T; Saito R; Adachi J; Suzuki H; Baldarelli R; Hayashizaki Y; Okazaki Y
CDS annotation in full-length cDNA sequence
13
106114139 2003 JUN [15] GENOME RESEARCH 13(6B):1488-1495
Kawai J; Hayashizaki Y
DNA book
23
107115140 2003 JUN [15] GENOME RESEARCH 13(6B):1501-1504
Lenhard B; Wahlestedt C; Wasserman WW
GeneLynx Mouse: Integrated portal to the mouse genome
00
108118141 2003 JUN [15] GENOME RESEARCH 13(6B):1505-1519
Baldarelli RM; Hill DP; Blake JA; Adachi J; Furuno M; Bradt D; Corbani LE; Cousins S; Frazer KS; Qi D; Yang LL; Ramachandran S; Reed D; Zhu YX; Kasukawa T; Ringwald M; King BL; Maltais LJ; McKenzie LM; Schriml LM; Maglott D; Church DM; Pruitt K; Eppig JT; Richardson JE; Kadin JA; Bult CJ
Connecting sequence and biology in the laboratory mouse
36
109135142 2003 JUN [15] GENOME RESEARCH 13(6B):1520-1533
Nagashima T; Silva DG; Petrovsky N; Socha LA; Suzuki H; Saito R; Kasukawa T; Kurochkin IV; Konagaya A; Schonbach C
Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS
12
110134143 2003 JUN [15] GENOME RESEARCH 13(6B):1534-1541
Suzuki H; Saito R; Kanamori M; Kai C; Schonbach C; Nagashima T; Hosaka J; Hayashizaki Y
The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer
11
#LCRNCRNodes / Authors / DateLCSGCS
11114144 2003 JUN [15] GENOME RESEARCH 13(6B):1552-1553
Batalov S; Fletcher CF
Exon structure analysis, ortholog identification, and SNP candidate screening by mapping mouse RIKEN sequences to multiple genome assemblies
00
112155185 2003 JUN [15] JOURNAL OF APPLIED PHYSIOLOGY 94(6):2502-2509
Bogue CW
Genetic models in applied physiology - Invited review: Functional genomics in the mouse: Powerful techniques for unraveling the basis of human development and disease
00
113131217 2003 JUN [15] MOLECULAR AND CELLULAR BIOLOGY 23(11):3982-3989
Schwenk F; Zevnik B; Bruning J; Rohl M; Willuweit A; Rode A; Hennek T; Kauselmann G; Jaenisch R; Kuhn R
Hybrid embryonic stem cell-derived tetraploid mice show apparently normal morphological, physiological, and neurological characteristics
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114178313 2003 JUN [15] TRENDS IN ECOLOGY & EVOLUTION 18(6):292-298
Zhang JZ
Evolution by gene duplication: an update
111
115220316 2003 JUN [15] TRENDS IN GENETICS 19(6):306-310
Nekrutenko A; Chung WY; Li WH
An evolutionary approach reveals a high protein-coding capacity of the human genome
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116279317 2003 JUN [15] TRENDS IN GENETICS 19(6):330-338
Marais G
Biased gene conversion: implications for genome and sex evolution
310
117150232 2003 JUN 19 NATURE 423(6942):825-U2
Skaletsky H; Kuroda-Kawaguchi T; Minx PJ; Cordum HS; Hillier L; Brown LG; Repping S; Pyntikova T; Ali J; Bieri T; Chinwalla A; Delehaunty A; Delehaunty K; Du H; Fewell G; Fulton L; Fulton R; Graves T; Hou SF; Latrielle P; Leonard S; Mardis E; Maupin R; McPherson J; Miner T; Nash W; Nguyen C; Ozersky P; Pepin K; Rock S; Rohlfing T; Scott K; Schultz B; Strong C; Tin-Wollam A; Yang SP; Waterston RH; Wilson RK; Rozen S; Page DC
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes
765
118134273 2003 JUN 24 PHYSIOLOGICAL GENOMICS 14(1):73-82
Conte C; Ebeling M; Marcuz A; Nef P; Andres-Barquin PJ
Evolutionary relationships of the Tas2r receptor gene families in mouse and human
01
119140289 2003 JUN 24 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(13):7672-7677
Pevzner P; Tesler G
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution
59
1201414 2003 [JUN 30] ACTA BIOCHIMICA POLONICA 50(1):81-102
Wlodawer A; Li M; Gustchina A; Oyama H; Dunn BM; Oda K
Structural and enzymatic properties of the sedolisin family of serine-carboxyl peptidases
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#LCRNCRNodes / Authors / DateLCSGCS
12116840 2003 [JUN 30] CHRONOBIOLOGY INTERNATIONAL 20(3):417-440
Refinetti R
Effects of prolonged exposure to darkness on circadian photic responsiveness in the mouse
00
122124745 2003 [JUN 30] CRITICAL REVIEWS IN IMMUNOLOGY 23(3):199-250
Glant TT; Finnegan A; Mikecz K
Proteoglycan-induced arthritis: Immune regulation, cellular mechanisms, and genetics
04
12313865 2003 [JUN 30] CYTOGENETIC AND GENOME RESEARCH 102(1-4):16-24
Hayes H; Elduque C; Gautier M; Schibler L; Cribiu E; Eggen A
Mapping of 195 genes in cattle and updated comparative map with man, mouse, rat and pig
00
12412866 2003 [JUN 30] CYTOGENETIC AND GENOME RESEARCH 102(1-4):163-172
Amarger V; Erlandsson R; Pielberg G; Jeon JT; Andersson L
Comparative sequence analysis of the PRKAG3 region between human and pig: evolution of repetitive sequences and potential new exons
00
12514267 2003 [JUN 30] CYTOGENETIC AND GENOME RESEARCH 102(1-4):244-248
Greer KA; Cargill EJ; Cox ML; Clark LA; Tsai KL; Credille KM; Dunstan RW; Venta PJ; Murphy KE
Digging up the canine genome - a tale to wag about
00
126115970 2003 [JUN 30] DEVELOPMENT OF AUDITORY AND VESTIBULAR SYSTEMS 3: MOLECULAR DEVELOPMENT OF THE INNER EAR 57():45-+
Quint E; Steel KP
Use of mouse genetics for studying inner ear development
00
12722778 2003 JUN 30 DNA RESEARCH 10(3):129-136
Hara Y; Shimada I; Kohga H; Ohara O; Koga H
High-throughput production of recombinant antigens for mouse KIAA proteins in Escherichia coli: Computational allocation of possible antigenic regions, and construction of expression plasmids of glutathione-S-transferase-fused antigens by an in vitro recombination-assisted method
01
12814085 2003 [JUN 30] EPILEPSIA 44():16-21
Noebels JL
Exploring new gene discoveries in idiopathic generalized epilepsy
04
129127107 2003 [JUN 30] GENOME BIOLOGY 4(3):-
Canestro C; Bassham S; Postlethwait JH
Seeing chordate evolution through the Ciona genome sequence
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130319108 2003 [JUN 30] GENOME BIOLOGY 4(4):-
Rossant J; Scherer SW
The mouse genome sequence - the end of the tail, or just the beginning?
00
#LCRNCRNodes / Authors / DateLCSGCS
131147109 2003 [JUN 30] GENOME BIOLOGY 4(7):-
Brachat S; Dietrich FS; Voegeli S; Zhang ZH; Stuart L; Lerch A; Gates K; Gaffney T; Philippsen P
Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii
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132119110 2003 [JUN 30] GENOME BIOLOGY 4(8):-
Dickens NJ; Ponting CP
THoR: a tool for domain discovery and curation of multiple alignments
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133144111 2003 [JUN 30] GENOME BIOLOGY 4(8):-
Cheung J; Wilson MD; Zhang JJ; Khaja R; MacDonald JR; Heng HHQ; Koop BF; Scherer SW
Recent segmental and gene duplications in the mouse genome
06
134136112 2003 [JUN 30] GENOME BIOLOGY 4(8):-
Locke DP; Archidiacono N; Misceo D; Cardone MF; Deschamps S; Roe B; Rocchi M; Eichler EE
Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster
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135135113 2003 [JUN 30] GENOME BIOLOGY 4(10):-
Yu JD; Farjo R; MacNee SP; Baehr W; Stambolian DE; Swaroop A
Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina
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136229114 2003 [JUN 30] GENOME BIOLOGY 4(12):-
Gupta BP; Sternberg PW
The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C-elegans
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Dubchak I; Frazer K
Multi-species sequence comparison: the next frontier in genome annotation
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Kopchick JJ
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139281194 2003 [JUN 30] JOURNAL OF COMPUTATIONAL BIOLOGY 10(3-4):453-482
Durand D; Sankoff D
Tests for gene clustering
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140114214 2003 [JUN 30] MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2003, PT 2 2879():878-885
Hamarneh G; Chen J; Neiman B; Henderson J; Henkelman M
Segmentation, registration, and deformation analysis of 3D MR images of mice
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141313256 2003 JUL 1 NUCLEIC ACIDS RESEARCH 31(13):3507-3509
Cawley S; Pachter L; Alexandersson M
SLAM web server for comparative gene finding and alignment
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MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences
714
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MAVID multiple alignment server
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PromH: promoters identification using orthologous genomic sequences
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Halees AS; Leyfer D; Weng ZP
PromoSer: a large-scale mammalian promoter and transcription start site identification service
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Automated Gene Ontology annotation for anonymous sequence data
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147156299 2003 JUL 7 PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 270(1522):1331-1340
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148249233 2003 JUL 10 NATURE 424(6945):157-U2
Hillier LW; Fulton RS; Fulton LA; Graves TA; Pepin KH; Wagner-McPherson C; Layman D; Maas J; Jaeger S; Walker R; Wylie K; Sekhon M; Becker MC; O'Laughlin MD; Schaller ME; Fewell GA; Delehaunty KD; Miner TL; Nash WE; Cordes M; Du H; Sun H; Edwards J; Bradshaw-Cordum H; Ali J; Andrews S; Isak A; VanBrunt A; Nguyen C; Du FY; Lamar B; Courtney L; Kalicki J; Ozersky P; Bielicki L; Scott K; Holmes A; Harkins R; Harris A; Strong CM; Hou SF; Tomlinson C; Dauphin-Kohlberg S; Kozlowicz-Reilly A; Leonard S; Rohlfing T; Rock SM; Tin-Wollam AM; Abbott A; Minx P; Maupin R; Strowmatt C; Latreille P; Miller N; Johnson D; Murray J; Woessner JP; Wendl MC; Yang SP; Schultz BR; Wallis JW; Spieth J; Bieri TA; Nelson JO; Berkowicz N; Wohldmann PE; Cook LL; Hickenbotham MT; Eldred J; Williams D; Bedell JA; Mardis ER; Clifton SW; Chissoe SL; Marra MA; Raymond C; Haugen E; Gillett W; Zhou Y; James R; Phelps K; Iadanoto S; Bubb K; Simms E; Levy R; Clendenning J; Kaul R; Kent WJ; Furey TS; Baertsch RA; Brent MR; Keibler E; Flicek P; Bork P; Suyama M; Bailey JA; Portnoy ME; Torrents D; Chinwalla AT; Gish WR; Eddy SR; McPherson JD; Olson MV; Eichler EE; Green ED; Waterston RH; Wilson RK
The DNA sequence of human chromosome 7
1015
14916416 2003 JUL [15] BASIC RESEARCH IN CARDIOLOGY 98(4):219-227
McDonald TG; Van Eyk JE
Mitochondrial proteomics - Undercover in the lipid bilayer
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15015676 2003 JUL [15] DNA AND CELL BIOLOGY 22(7):457-468
Balliet AG; Hollander MC; Fornace AJ; Hoffman B; Liebermann DA
Comparative analysis of the genetic structure and chromosomal mapping of the murine Gadd45g/CR6 gene
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151226145 2003 JUL [15] GENOME RESEARCH 13(7):1631-1637
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Intronic sequences flanking alternatively spliced exons are conserved between human and mouse
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152133146 2003 JUL [15] GENOME RESEARCH 13(7):1765-1774
Khambata-Ford S; Liu YY; Gleason C; Dickson M; Altman RB; Batzoglou S; Myers RM
Identification of promoter regions in the human genome by using a retroviral plasmid library-based functional reporter gene assay
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153146162 2003 JUL [15] GENOMICS 82(1):34-46
Deschamps S; Meyer J; Chatterjee G; Wang H; Lengyel P; Roe BA
The mouse Ifi200 gene cluster: genomic sequence, analysis, and comparison with the human HIN-200 gene cluster
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154125171 2003 JUL [15] HUMAN GENETICS 113(1):60-70
Zhu LX; Swergold GD; Seldin MF
Examination of sequence homology between human chromosome 20 and the mouse genome: intense conservation of many genomic elements
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Schneider H; Patil SP; Canisius S; Gladmon EA; Schwartz AR; O'Donnell CP; Smith PL; Tankersley CG
Hypercapnic duty cycle is an intermediate physiological phenotype linked to mouse chromosome 5
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156148192 2003 JUL 15 JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES 792(1):33-48
Minamino N; Tanaka J; Kuwahara H; Kihara T; Satomi Y; Matsubae M; Takao T
Determination of endogenous peptides in the porcine brain: possible construction of Peptidome, a fact database for endogenous peptides
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157131203 2003 JUL [15] JOURNAL OF VIROLOGY 77(13):7459-7466
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Functional analysis of the endogenous retroviral promoter of the human endothelin B receptor gene
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Insights from human/mouse genome comparisons
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159129240 2003 JUL [15] NATURE GENETICS 34(3):297-302
Nakai H; Montini E; Fuess S; Storm TA; Grompe M; Kay MA
AAV serotype 2 vectors preferentially integrate into active genes in mice
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Puente XS; Sanchez LM; Overall CM; Lopez-Otin C
Human and mouse proteases: A comparative genomic approach
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161140268 2003 JUL [15] NUTRITION REVIEWS 61(7):255-258
Lamprecht SA
Mouse models of gastrointestinal tumorigenesis for dietary cancer prevention studies
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Freire NP; Tennant MR; Miyamoto MM
Microarray analyses of reptiles and amphibians: Applications in ecology and evolution
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16313995 2003 JUL 17 GENE 312():61-72
Zhang ZL; Gerstein M
The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse
11
164127262 2003 AUG 1 NUCLEIC ACIDS RESEARCH 31(15):4490-4496
Matsuyama T; Kimura MT; Koike K; Abe T; Nakano T; Asami T; Ebisuzaki T; Held WA; Yoshida S; Nagase H
Global methylation screening in the Arabidopsis thaliana and Mus musculus genome: applications of virtual image restriction landmark genomic scanning (Vi-RLGS)
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165560306 2003 AUG 8 SCIENCE 301(5634):793-797
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Structural dynamics of eukaryotic chromosome evolution
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166430234 2003 AUG 14 NATURE 424(6950):788-793
Thomas JW; Touchman JW; Blakesley RW; Bouffard GG; Beckstrom-Sternberg SM; Margulies EH; Blanchette M; Siepel AC; Thomas PJ; McDowell JC; Maskeri B; Hansen NF; Schwartz MS; Weber RJ; Kent WJ; Karolchik D; Bruen TC; Bevan R; Cutler DJ; Schwartz S; Elnitski L; Idol JR; Prasad AB; Lee-Lin SQ; Maduro VVB; Summers TJ; Portnoy ME; Dietrich NL; Akhter N; Ayele K; Benjamin B; Cariaga K; Brinkley CP; Brooks SY; Granite S; Guan X; Gupta J; Haghighi P; Ho SL; Huang MC; Karlins E; Laric PL; Legaspi R; Lim MJ; Maduro QL; Masiello CA; Mastrian SD; McCloskey JC; Pearson R; Stantripop S; Tiongson EE; Tran JT; Tsurgeon C; Vogt JL; Walker MA; Wetherby KD; Wiggins LS; Young AC; Zhang LH; Osoegawa K; Zhu B; Zhao B; Shu CL; De Jong PJ; Lawrence CE; Smit AF; Chakravarti A; Haussler D; Green P; Miller W; Green ED
Comparative analyses of multi-species sequences from targeted genomic regions
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U1A RNA-binding domain at 1.8 angstrom resolution
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16815514 2003 AUG [15] ANTIVIRAL RESEARCH 59(3):181-191
Moreau JM; Dyer KD; Bonville CA; Nitto T; Vasquez NL; Easton AJ; Domachowske JB; Rosenberg HF
Diminished expression of an antiviral ribonuclease in response to pneumovirus infection in vivo
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16914626 2003 AUG [15] BIOCHEMICAL SOCIETY TRANSACTIONS 31():801-805
LeClair EE
Four BPI (bactericidal/permeability-increasing protein)-like genes expressed in the mouse nasal, oral, airway and digestive epithelia
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Bingle CD; Craven CJ
Comparative analysis of the PLUNC (palate, lung and nasal epithelium clone) protein families
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171112737 2003 AUG [15] CELLULAR AND MOLECULAR LIFE SCIENCES 60(8):1647-1658
Antequera F
Structure, function and evolution of CpG island promoters
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17225743 2003 AUG [15] CNS SPECTRUMS 8(8):578-+
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Mouse genetic approaches to feeding regulation: Serotonin 5-HT2C receptor mutant mice
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17317061 2003 AUG [15] CURRENT OPINION IN NEUROLOGY 16(4):451-458
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Mouse models as a tool for understanding neurodegenerative diseases
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17417683 2003 AUG [15] EAR AND HEARING 24(4):332-341
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Mouse models for deafness: Lessons for the human inner ear and hearing loss
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17516492 2003 AUG [15] FUNGAL GENETICS AND BIOLOGY 39(3):250-263
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Characterization of the genomic organization of the region bordering the centromere of chromosome V of Podospora anserina by direct sequencing
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Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution
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177135104 2003 AUG [15] GENES BRAIN AND BEHAVIOR 2(4):191-200
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Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR-and L2-derived sequences within the mouse and human genomes
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179134147 2003 AUG [15] GENOME RESEARCH 13(8):1873-1879
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A population threshold for functional polymorphisms
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A cattle-human comparative map built with cattle BAC-ends and human genome sequence
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181146188 2003 AUG 15 JOURNAL OF BIOLOGICAL CHEMISTRY 278(33):30450-30457
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New approaches to investigating heterogeneity in complex traits
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183111204 2003 AUG [15] LIVER TRANSPLANTATION 9(8):789-795
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Arterialized partial orthotopic liver transplantation in the mouse: A new model and evaluation of the critical liver mass
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184138207 2003 AUG [15] MAMMALIAN GENOME 14(8):526-536
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Strong conservation of the human NF2 locus based on sequence comparison in five species
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185165208 2003 AUG [15] MAMMALIAN GENOME 14(8):565-579
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Gene diversity patterns at 10 X-chromosomal loci in humans and chimpanzees
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187326221 2003 AUG [15] MOLECULAR BIOLOGY AND EVOLUTION 20(8):1299-1309
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GS-aligner: A novel tool for aligning genomic sequences using bit-level operations
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188128224 2003 AUG [15] MOLECULAR GENETICS AND GENOMICS 269(5):715-722
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An integrated physical and genetic map of the nematode Pristionchus pacificus
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189147242 2003 AUG [15] NATURE IMMUNOLOGY 4(8):801-807
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Genetically linked C-type lectin-related ligands for the NKRP1 family of natural killer cell receptors
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Jobling MA; Tyler-Smith C
The human Y chromosome: An evolutionary marker comes of age
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An important role for RUNX3 in human L1 transcription and retrotransposition
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The Arabidopsis basic/helix-loop-helix transcription factor family
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Positional cloning of Ncf1 - a piece in the puzzle of arthritis genetics
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de Bono B; Trowsdale J
Exploring the immunogenome with bioinformatics
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195128215 2003 AUG 18 MEDICAL JOURNAL OF AUSTRALIA 179(4):212-216
Mattick JS
The human genome and the future of medicine
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196137290 2003 AUG 19 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(17):10043-10048
Zylka MJ; Dong XZ; Southwell AL; Anderson DJ
Atypical expansion in mice of the sensory neuronspecific Mrg G protein-coupled receptor family
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01
198160271 2003 AUG 29 PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 358(1436):1417-1423
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00

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