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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by NCR.
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#LCRNCRNodes / Authors / DateLCSGCS
201148220 2003 MOLECULAR BIOLOGY AND EVOLUTION 20(8):1281-1289
Kitano T; Schwarz C; Nickel B; Paabo S
Gene diversity patterns at 10 X-chromosomal loci in humans and chimpanzees
12
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Sharp JS; Becker JM; Hettich RL
Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry
00
203148345 2004 BMC GENETICS 5():-
Peirce JL; Lu L; Gu J; Silver LM; Williams RW
A new set of BXD recombinant inbred lines from advanced intercross populations in mice
00
204148432 2004 GENOMICS 83(4):577-587
Smolenski A; Schultess J; Danielewski O; Arguinzonis MIG; Thalheimer P; Kneitz S; Walter U; Lohmann SM
Quantitative analysis of the cardiac fibroblast transcriptome-implications for NO/cGMP signaling
00
205448434 2004 GENOMICS 83(4):694-705
Long LY; Davidson JN; Spear BT
Striking differences between the mouse and the human alpha-fetoprotein enhancers
00
206248486 2004 NATURE 428(6982):529-535
Grimwood J; Gordon LA; Olsen A; Terry A; Schmutz J; Lamerdin J; Hellsten U; Goodstein D; Couronne O; Gyamfi MT; Aerts A; Altherr M; Ashworth L; Bajorek E; Black S; Branscomb E; Caenepeel S; Carrano A; Caoile C; Chan YM; Christensen M; Cleland CA; Copeland A; Dalin E; Dehal P; Denys M; Detter JC; Escobar J; Flowers D; Fotopulos D; Garcia C; Georgescu AM; Glavina T; Gomez M; Gonzales E; Groza M; Hammon N; Hawkins T; Haydu L; Ho I; Huang W; Israni S; Jett J; Kadner K; Kimball H; Kobayashi A; Larionov V; Leem SH; Lopez F; Lou YL; Lowry S; Malfatti S; Martinez D; McCready P; Medina C; Morgan J; Nelson K; Nolan M; Ovcharenko I; Pitluck S; Pollard M; Popkie AP; Predki P; Quan G; Ramirez L; Rash S; Retterer J; Rodriguez A; Rogers S; Salamov A; Salazar A; She XW; Smith D; Slezak T; Solovyev V; Thayer N; Tice H; Tsai M; Ustaszewska A; Vo N; Wagner M; Wheeler J; Wu K; Xie G; Yang J; Dubchak I; Furey TS; DeJong P; Dickson M; Gordon D; Eichler EE; Pennacchio LA; Richardson P; Stubbs L; Rokhsar DS; Myers RM; Rubin EM; Lucas SM
The DNA sequence and biology of human chromosome 19
12
207248543 2004 TRENDS IN GENETICS 20(1):9-14
Furano AV; Duvernell DD; Boissinot S
L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish
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Copley RR; Goodstadt L; Ponting C
Eukaryotic domain evolution inferred from genome comparisons
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Blanco JG; Edick MJ; Relling MV
Etoposide induces chimeric Mll gene fusions
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Krebs CJ; Larkins LK; Price R; Tullis KM; Miller RD; Robins DM
Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorihic liver gene expression
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211147109 2003 GENOME BIOLOGY 4(7):-
Brachat S; Dietrich FS; Voegeli S; Zhang ZH; Stuart L; Lerch A; Gates K; Gaffney T; Philippsen P
Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii
05
212147242 2003 NATURE IMMUNOLOGY 4(8):801-807
Iizuka K; Naidenko OV; Plougastel BFM; Fremont DH; Yokoyama WM
Genetically linked C-type lectin-related ligands for the NKRP1 family of natural killer cell receptors
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213247282 2003 PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES 79(2):34-50
Yoshida T; Yoshimura K
Outline of disease gene hunting approaches in the Millennium Genome Project of Japan
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Halligan DL; Eyre-Walker A; Andolfatto P; Keightley PD
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215347474 2004 MOLECULAR BIOLOGY AND EVOLUTION 21(6):984-990
Meunier J; Duret L
Recombination drives the evolution of GC-content in the human genome
00
21614626 2003 BIOCHEMICAL SOCIETY TRANSACTIONS 31():801-805
LeClair EE
Four BPI (bactericidal/permeability-increasing protein)-like genes expressed in the mouse nasal, oral, airway and digestive epithelia
22
21784651 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):562-568
Ellegren H; Smith NGC; Webster MT
Mutation rate variation in the mammalian genome
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21874652 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):604-610
Cooper GM; Sidow A
Genomic regulatory regions: insights from comparative sequence analysis
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219146162 2003 GENOMICS 82(1):34-46
Deschamps S; Meyer J; Chatterjee G; Wang H; Lengyel P; Roe BA
The mouse Ifi200 gene cluster: genomic sequence, analysis, and comparison with the human HIN-200 gene cluster
02
220146188 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(33):30450-30457
Sakao E; Ishihara A; Horikawa K; Akiyama M; Arai M; Kato M; Seki N; Fukunaga K; Shimizu-Yabe A; Iwase K; Ohtsuka S; Sato T; Kohno Y; Shibata S; Takiguchi M
Two-peaked synchronization in day/night expression rhythms of the fibrinogen gene cluster in the mouse liver
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221346406 2004 GENOME RESEARCH 14(4):603-608
Lane RP; Young J; Newman T; Trask BJ
Species specificity in rodent pheromone receptor repertoires
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222446487 2004 NATURE 429(6990):382-388
Watanabe H; Fujiyama A; Hattori M; Taylor TD; Toyoda A; Kuroki Y; Noguchi H; BenKahla A; Lehrach H; Sudbrak R; Kube M; Taenzer S; Galgoczy P; Platzer M; Scharfe M; Nordsiek G; Blocker HB; Hellmann I; Khaitovich P; Paabo S; Reinhardt R; Zheng HJ; Zhang XL; Zhu GF; Wang BF; Fu G; Ren SX; Zhao GP; Chen Z; Lee YS; Cheong JE; Choi SH; Wu KM; Liu TT; Hsiao KJ; Tsai SF; Kim CG; Oota S; Kitano T; Kohara Y; Saitou N; Park HS; Wang SY; Yaspo ML; Sakaki Y
DNA sequence and comparative analysis of chimpanzee chromosome 22
01
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Blomberg LA; Zuelke KA
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Roskoski R
STI-571: an anticancer protein-tyrosine kinase inhibitor
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225245158 2003 GENOME RESEARCH 13(12):2651-2657
Cutter AD; Payseur BA; Salcedo T; Estes AM; Good JM; Wood E; Hartl T; Maughan H; Strempel J; Wang BM; Bryan AC; Dellos M
Molecular correlates of genes exhibiting RNAi phenotypes in Caenorhabditis elegans
02
226145247 2003 NATURE REVIEWS GENETICS 4(4):309-314
Bochner BR
New technologies to assess genotype-phenotype relationships
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227545257 2003 NUCLEIC ACIDS RESEARCH 31(13):3518-3524
Schwartz S; Elnitski L; Li M; Weirauch M; Riemer C; Smit A; Program NCS; Green ED; Hardison RC; Miller W
MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences
714
228245315 2003 TRENDS IN GENETICS 19(4):200-206
Hedges SB; Kumar S
Genomic clocks and evolutionary timescales
012
229545398 2004 GENOME RESEARCH 14(4):517-527
Yang S; Smit AF; Schwartz S; Chiaromonte F; Roskin KM; Haussler D; Miller W; Hardison RC
Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes
11
230245427 2004 GENOMICS 83(1):76-84
Rahman L; Bliskovski V; Kaye FJ; Zajac-Kaye M
Evolutionary conservation of a 2-kb intronic sequence flanking a tissue-specific alternative exon in the PTBP2 gene
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#LCRNCRNodes / Authors / DateLCSGCS
231345465 2004 MAMMALIAN GENOME 15(5):344-351
Buchner DA; Seburn KL; Frankel WN; Meisler MH
Three ENU-induced neurological mutations in the pore loop of sodium channel Scn8a (Na(v)1.6) and a genetically linked retinal mutation, rd13
00
232145467 2004 MOLECULAR AND CELLULAR BIOLOGY 24(4):1640-1648
Gaudet F; Rideout WM; Meissner A; Dausman J; Leonhardt H; Jaenisch R
Dnmt1 expression in pre-and postimplantation embryogenesis and the maintenance of IAP silencing
00
233144111 2003 GENOME BIOLOGY 4(8):-
Cheung J; Wilson MD; Zhang JJ; Khaja R; MacDonald JR; Heng HHQ; Koop BF; Scherer SW
Recent segmental and gene duplications in the mouse genome
06
2341444115 2003 GENOME BIOLOGY 4(12):-
Dubchak I; Frazer K
Multi-species sequence comparison: the next frontier in genome annotation
01
235144151 2003 GENOME RESEARCH 13(9):2129-2141
Thomas PD; Campbell MJ; Kejariwal A; Mi HY; Karlak B; Daverman R; Diemer K; Muruganujan A; Narechania A
PANTHER: A library of protein families and subfamilies indexed by function
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236144176 2003 HUMAN MOLECULAR GENETICS 12(17):2109-2120
Peters T; Thaete C; Wolf S; Popp A; Sedlmeier R; Grosse J; Nehls MC; Russ A; Schlueter V
A mouse model for cystinuria type I
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237144223 2003 MOLECULAR BIOLOGY AND EVOLUTION 20(11):1925-1931
Ganko EW; Bhattachajee V; Schliekelman P; McDonald JF
Evidence for the contribution of LTR retrotransposons to C-elegans gene evolution
01
238144227 2003 NATURE 422(6934):835-847
Collins FS; Green ED; Guttmacher AE; Guyer MS
A vision for the future of genomics research
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239144267 2003 NUCLEIC ACIDS RESEARCH 31(24):7271-7279
Moore JE; Lake JA
Gene structure prediction in syntenic DNA segments
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240444403 2004 GENOME RESEARCH 14(4):567-573
Makova KD; Yang S; Chiaromonte F
Insertions and deletions are male biased too: A whole-genome analysis in rodents
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241144469 2004 MOLECULAR AND CELLULAR BIOLOGY 24(13):5923-5936
Kim JW; Zeller KI; Wang Y; Jegga AG; Aronow BJ; O'Donnell KA; Dang CV
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242244515 2004 NUCLEIC ACIDS RESEARCH 32(5):1731-1737
Kondrashov FA; Ogurtsov AY; Kondrashov AS
Bioinformatical assay of human gene morbidity
00
2432436 2003 AMERICAN JOURNAL OF HUMAN GENETICS 72(6):1527-1535
Hellmann I; Ebersberger I; Ptak SE; Paabo S; Przeworski M
A neutral explanation for the correlation of diversity with recombination rates in humans
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24414334 2003 BMC GENOMICS 4():-
Oduru S; Campbell JL; Karri S; Hendry WJ; Khan SA; Williams SC
Gene discovery in the hamster: a comparative genomics approach for gene annotation by sequencing of hamster testis cDNAs
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Rogers MS; Rohan RM; Birsner AE; D'Amato RJ
Genetic loci that control vascular endothelial growth factor-induced angiogenesis
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24614398 2003 GENE 319():149-160
Vassetzky NS; Ten OA; Kramerov DA
B1 and related SINEs in mammalian genomes
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247143352 2004 CHINESE SCIENCE BULLETIN 49(2):146-152
Tian M; Xiong YL; Wang WY; Zhang YP
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248143444 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279(10):9497-9503
Schoch GA; Yano JK; Wester MR; Griffin KJ; Stout CD; Johnson EF
Structure of human microsomal cytochrome P4502C8 - Evidence for a peripheral fatty acid binding site
01
24924256 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):629-635
Jackson M
Duplicate, decouple, disperse: the evolutionary transience of human centromeric regions
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25014267 2003 CYTOGENETIC AND GENOME RESEARCH 102(1-4):244-248
Greer KA; Cargill EJ; Cox ML; Clark LA; Tsai KL; Credille KM; Dunstan RW; Venta PJ; Murphy KE
Digging up the canine genome - a tale to wag about
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251142118 2003 GENOME RESEARCH 13(1):37-45
Pevzner P; Tesler G
Genome Rearrangements in mammalian evolution: Lessons from human and mouse genomes
920
252442193 2003 JOURNAL OF CLINICAL INVESTIGATION 111(8):1099-1106
Pennacchio LA; Rubin EM
Comparative genomic tools and databases: providing insights into the human genome
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253142357 2004 DEVELOPMENTAL BIOLOGY 268(1):7-23
Ficker M; Powles N; Warr N; Pirvola U; Maconochie M
Analysis of genes from inner ear developmental-stage cDNA subtraction reveals molecular regionalization of the otic capsule
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254642426 2004 GENOME RESEARCH 14(6):1191-1198
Ovcharenko I; Boffelli D; Loots GG
EShadow: A tool for comparing closely related sequences
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255242468 2004 MOLECULAR AND CELLULAR BIOLOGY 24(9):4004-4018
Yusa K; Takeda J; Horie K
Enhancement of sleeping beauty transposition by CpG methylation: Possible role of heterochromatin formation
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256242492 2004 NATURE GENETICS 36(3):304-312
Chen WSV; Delrow J; Corrin PD; Frazier JP; Soriano P
Identification and validation of PDGF transcriptional targets by microarray-coupled gene-trap mutagenesis
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2571414 2003 ACTA BIOCHIMICA POLONICA 50(1):81-102
Wlodawer A; Li M; Gustchina A; Oyama H; Dunn BM; Oda K
Structural and enzymatic properties of the sedolisin family of serine-carboxyl peptidases
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258141281 2003 PLOS BIOLOGY 1(3):410-419
Sharov AA; Piao YL; Matoba R; Dudekula DB; Qian Y; Vanburen V; Falco G; Martin PR; Stagg CA; Bassey UC; Wang YX; Carter MG; Hamatani T; Aiba K; Akutsu H; Sharova L; Tanaka TS; Kimber WL; Yoshikawa T; Jaradat SA; Pantano S; Nagaraja R; Boheler KR; Taub D; Hodes RJ; Longo DL; Schlessinger D; Keller J; Klotz E; Kelsoe G; Umezawa A; Vescovi AL; Rossant J; Kunath T; Hogan BLM; Curci A; D'Urso M; Kelso J; Hide W; Ko MSH
Transcriptome analysis of mouse stem cells and early embryos
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259141377 2004 GENES TO CELLS 9(4):331-344
Andachi Y
Caenorhabditis elegans T-box genes tbx-9 and tbx-8 are required for formation of hypodermis and body-wall muscle in embryogenesis
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260341402 2004 GENOME RESEARCH 14(4):555-566
Taylor MS; Ponting CP; Copley RR
Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes
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261141436 2004 GENOMICS 83(5):802-811
Zhang XM; Rodriguez I; Mombaerts P; Firestein S
Odorant and vomeronasal receptor genes in two mouse genome assemblies
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262141466 2004 MAMMALIAN GENOME 15(7):515-524
Storchova R; Gregorova S; Buckiova D; Kyselova V; Divina P; Forejt J
Genetic analysis of X-linked hybrid sterility in the house mouse
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2631408 2003 AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY 285(6):C1356-C1366
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Distribution and functional properties of human KCNH8 (Elk1) potassium channels
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26414085 2003 EPILEPSIA 44():16-21
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Exploring new gene discoveries in idiopathic generalized epilepsy
04
265140125 2003 GENOME RESEARCH 13(1):108-117
Parra G; Agarwal P; Abril JF; Wiehe T; Fickett JW; Guigo R
Comparative gene prediction in human and mouse
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266140212 2003 MAMMALIAN GENOME 14(12):859-865
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Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT
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267140268 2003 NUTRITION REVIEWS 61(7):255-258
Lamprecht SA
Mouse models of gastrointestinal tumorigenesis for dietary cancer prevention studies
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268140289 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(13):7672-7677
Pevzner P; Tesler G
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution
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Multiple variable first exons: A mechanism for cell-and tissue-specific gene regulation
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Measurement of refractive state and deprivation myopia in two strains of mice
11
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27113995 2003 GENE 312():61-72
Zhang ZL; Gerstein M
The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse
11
272139127 2003 GENOME RESEARCH 13(5):831-837
Hellmann I; Zollner S; Enard W; Ebersberger I; Nickel B; Paabo S
Selection on human genes as revealed by comparisons to chimpanzee cDNA
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273139186 2003 JOURNAL OF APPLIED PHYSIOLOGY 95(1):11-19
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Hypercapnic duty cycle is an intermediate physiological phenotype linked to mouse chromosome 5
00
274139210 2003 MAMMALIAN GENOME 14(10):679-691
Laukaitis CM; Dlouhy SR; Karn RC
The mouse salivary androgen-binding protein (ABP) gene cluster on chromosomes 7: characterization and evolutionary relationships
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275139225 2003 MOLECULAR GENETICS AND GENOMICS 270(2):173-180
Sarkar A; Sim C; Hong YS; Hogan JR; Fraser MJ; Robertson HM; Collins FH
Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences
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276639251 2003 NATURE REVIEWS GENETICS 4(9):741-749
Wang J; Li ST; Zhang Y; Zheng HK; Xu Z; Ye J; Yu J; Wong GKS
Vertebrate gene predictions and the problem of large genes
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277339283 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(3):1140-1145
Guigo R; Dermitzakis ET; Agarwal P; Ponting CP; Parra G; Reymond A; Abril JF; Keibler E; Lyle R; Ucla C; Antonarakis SE; Brent MR
Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes
1017
278239354 2004 CURRENT OPINION IN PLANT BIOLOGY 7(2):102-107
Martienssen RA; Rabinowicz PD; O'Shaughnessy A; McCombie WR
Sequencing the maize genome
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279539415 2004 GENOME RESEARCH 14(4):721-732
Havlak P; Chen R; Durbin KJ; Egan A; Ren YR; Song XZ; Weinstock GM; Gibbs RA
The atlas genome assembly system
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280239448 2004 JOURNAL OF BONE AND MINERAL RESEARCH 19(4):600-606
Judex S; Garman R; Squire M; Donahue LR; Rubin C
Genetically based influences on the site-specific regulation of trabecular and cortical bone morphology
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281239525 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(8):2241-2246
Pan Y; Kislinger T; Gramolini AO; Zvaritch E; Kranias EG; MacLennan DH; Emili A
Identification of biochemical adaptations in hyper-or hypocontractile hearts from phospholamban mutant mice by expression proteomics
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282539541 2004 TRENDS IN BIOTECHNOLOGY 22(4):161-167
Hayashizaki Y; Kanamori M
Dynamic transcriptome of mice
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28313844 2003 COMPARATIVE MEDICINE 53(2):119-125
Linder CC
Mouse nomenclature and maintenance of genetically engineered mice
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28413865 2003 CYTOGENETIC AND GENOME RESEARCH 102(1-4):16-24
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Mapping of 195 genes in cattle and updated comparative map with man, mouse, rat and pig
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285138207 2003 MAMMALIAN GENOME 14(8):526-536
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Strong conservation of the human NF2 locus based on sequence comparison in five species
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286138276 2003 PHYSIOLOGICAL GENOMICS 16(1):119-130
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Pancreatic triacylglycerol lipase in a hibernating mammal. I. Novel genomic organization
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FRAGS: estimation of coding sequence substitution rates from fragmentary data
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288138431 2004 GENOMICS 83(3):384-394
Zhang CT; Zhang R
Isochore structures in the mouse genome
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289138458 2004 JOURNAL OF PINEAL RESEARCH 36(3):165-170
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Age-related changes in murine CNS mRNA gene expression are modulated by dietary melatonin
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290238470 2004 MOLECULAR BIOLOGY 38(1):70-77
Mironov AA; Gelfand MS
Prediction and computer analysis of the exon-intron structure of human genes
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2913377 2003 AMERICAN JOURNAL OF HUMAN GENETICS 73(4):823-834
Bailey JA; Liu G; Eichler EE
An Alu transposition model for the origin and expansion of human segmental duplications
37
292137136 2003 GENOME RESEARCH 13(6B):1455-1465
Miki H; Setou M; Hirokawa N
Kinesin superfamily proteins (KIFs) in the mouse transcriptome
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293137260 2003 NUCLEIC ACIDS RESEARCH 31(13):3554-3559
Halees AS; Leyfer D; Weng ZP
PromoSer: a large-scale mammalian promoter and transcription start site identification service
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294137290 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(17):10043-10048
Zylka MJ; Dong XZ; Southwell AL; Anderson DJ
Atypical expansion in mice of the sensory neuronspecific Mrg G protein-coupled receptor family
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295137370 2004 GENE 325():145-155
Poloumienko A; Cote A; Ten Quee AT; Zhu L; Bakovic M
Genomic organization and differential splicing of the mouse and human Pcyt2 genes
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296537456 2004 JOURNAL OF PHYSIOLOGY-LONDON 554(1):31-39
Nobrega MA; Pennacchio LA
Comparative genomic analysis as a tool for biological discovery
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297237527 2004 PROTEIN SCIENCE 13(2):422-430
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Phylogenetic and evolutionary analysis of the PLUNC gene family
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2981237536 2004 SCIENCE 304(5675):1321-1325
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Ultraconserved elements in the human genome
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29913622 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 311(4):884-890
Kremenskoy M; Kremenska Y; Ohgane J; Hattori N; Tanaka S; Hashizume K; Shiota K
Genome-wide analysis of DNA methylation status of CpG islands in embryoid bodies, teratomas, and fetuses
01
30013636 2003 CANCER RESEARCH 63(12):3317-3324
Wang M; Lemon WJ; Liu GJ; Wang Y; Iraqi FA; Malkinson AM; You M
Fine mapping and identification of candidate pulmonary adenoma susceptibility 1 genes using advanced intercross lines
05

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