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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by LCS.
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#LCRNCRNodes / Authors / DateLCSGCS
301150218 2003 MOLECULAR AND CELLULAR BIOLOGY 23(21):7648-7657
Adhikary S; Peukert K; Karsunky H; Beuger V; Lutz W; Elsasser HP; Moroy T; Eilers M
Miz1 is required for early embryonic development during gastrulation
00
302326221 2003 MOLECULAR BIOLOGY AND EVOLUTION 20(8):1299-1309
Shih ACC; Li WH
GS-aligner: A novel tool for aligning genomic sequences using bit-level operations
01
303144223 2003 MOLECULAR BIOLOGY AND EVOLUTION 20(11):1925-1931
Ganko EW; Bhattachajee V; Schliekelman P; McDonald JF
Evidence for the contribution of LTR retrotransposons to C-elegans gene evolution
01
304128224 2003 MOLECULAR GENETICS AND GENOMICS 269(5):715-722
Srinivasan J; Sinz W; Jesse T; Wiggers-Perebolte L; Jansen K; Buntjer J; van der Meulen M; Sommer RJ
An integrated physical and genetic map of the nematode Pristionchus pacificus
03
305139225 2003 MOLECULAR GENETICS AND GENOMICS 270(2):173-180
Sarkar A; Sim C; Hong YS; Hogan JR; Fraser MJ; Robertson HM; Collins FH
Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences
00
30618229 2003 NATURE 423(6935):26-28
Lee JT
Molecular biology: Complicity of gene and pseudogene
03
307127231 2003 NATURE 423(6941):762-769
Yamauchi T; Kamon J; Ito Y; Tsuchida A; Yokomizo T; Kita S; Sugiyama T; Miyagishi M; Hara K; Tsunoda M; Murakami K; Ohteki T; Uchida S; Takekawa S; Waki H; Tsuno NH; Shibata Y; Terauchi Y; Froguel P; Tobe K; Koyasu S; Taira K; Kitamura T; Shimizu T; Nagai R; Kadowaki T
Cloning of adiponectin receptors that mediate antidiabetic metabolic effects
072
308210237 2003 NATURE BIOTECHNOLOGY 21(1):31-32
Sands AT
The master mammal
00
309110239 2003 NATURE GENETICS 33(1):3-4
O'Brien T; Woychik R
Our small relative
00
31024243 2003 NATURE REVIEWS GENETICS 4(1):4-5
Gunter C
Mouse genome - The mighty mouse
00
#LCRNCRNodes / Authors / DateLCSGCS
3111111244 2003 NATURE REVIEWS GENETICS 4(3):195-205
Buer J; Balling R
Mice, microbes and models of infection
05
312145247 2003 NATURE REVIEWS GENETICS 4(4):309-314
Bochner BR
New technologies to assess genotype-phenotype relationships
011
313639251 2003 NATURE REVIEWS GENETICS 4(9):741-749
Wang J; Li ST; Zhang Y; Zheng HK; Xu Z; Ye J; Yu J; Wong GKS
Vertebrate gene predictions and the problem of large genes
00
3141122252 2003 NATURE REVIEWS GENETICS 4(11):865-875
Long M; Betran E; Thornton K; Wang W
The origin of new genes: Glimpses from the young and old
02
315313256 2003 NUCLEIC ACIDS RESEARCH 31(13):3507-3509
Cawley S; Pachter L; Alexandersson M
SLAM web server for comparative gene finding and alignment
01
316123259 2003 NUCLEIC ACIDS RESEARCH 31(13):3540-3545
Solovyev VV; Shahmuradov IA
PromH: promoters identification using orthologous genomic sequences
00
317137260 2003 NUCLEIC ACIDS RESEARCH 31(13):3554-3559
Halees AS; Leyfer D; Weng ZP
PromoSer: a large-scale mammalian promoter and transcription start site identification service
00
318119261 2003 NUCLEIC ACIDS RESEARCH 31(13):3712-3715
Hennig S; Groth D; Lehrach H
Automated Gene Ontology annotation for anonymous sequence data
03
319127262 2003 NUCLEIC ACIDS RESEARCH 31(15):4490-4496
Matsuyama T; Kimura MT; Koike K; Abe T; Nakano T; Asami T; Ebisuzaki T; Held WA; Yoshida S; Nagase H
Global methylation screening in the Arabidopsis thaliana and Mus musculus genome: applications of virtual image restriction landmark genomic scanning (Vi-RLGS)
00
320134265 2003 NUCLEIC ACIDS RESEARCH 31(21):6096-6103
de Bono B; Chothia C
Exegesis: a procedure to improve gene predictions and its use to find immunoglobulin superfamily proteins in the human and mouse genomes
00
#LCRNCRNodes / Authors / DateLCSGCS
321220266 2003 NUCLEIC ACIDS RESEARCH 31(23):6935-6941
Gotea V; Veeramachaneni V; Makalowski W
Mastering seeds for genomic size nucleotide BLAST searches
00
322144267 2003 NUCLEIC ACIDS RESEARCH 31(24):7271-7279
Moore JE; Lake JA
Gene structure prediction in syntenic DNA segments
00
323140268 2003 NUTRITION REVIEWS 61(7):255-258
Lamprecht SA
Mouse models of gastrointestinal tumorigenesis for dietary cancer prevention studies
00
324834269 2003 PHARMACOGENOMICS 4(5):571-582
Cheng JF; Pennacchio LA
Comparative and functional analysis of cardiovascular-related genes
00
325170270 2003 PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 358(1436):1381-1388
Knowles BB; Evsikov AV; de Vries WN; Peaston AE; Solter D
Molecular control of the oocyte to embryo transition
01
326160271 2003 PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 358(1436):1417-1423
Lee JT
Functional intergenic transcription: a case study of the X-inactivation centre
01
327134273 2003 PHYSIOLOGICAL GENOMICS 14(1):73-82
Conte C; Ebeling M; Marcuz A; Nef P; Andres-Barquin PJ
Evolutionary relationships of the Tas2r receptor gene families in mouse and human
01
328136274 2003 PHYSIOLOGICAL GENOMICS 15(3):236-242
Woo DDL; Kurtz I
Mapping blood pressure loci in (A/J x B6) F2 mice
00
329174275 2003 PHYSIOLOGICAL GENOMICS 16(1):90-98
Schwartz F; Duka A; Triantafyllidi E; Johns C; Duka I; Cui J; Gavras H
Serial analysis of gene expression in mouse kidney following angiotensin II administration
00
330138276 2003 PHYSIOLOGICAL GENOMICS 16(1):119-130
Squire TL; Andrews MT
Pancreatic triacylglycerol lipase in a hibernating mammal. I. Novel genomic organization
01
#LCRNCRNodes / Authors / DateLCSGCS
331156277 2003 PIGMENT CELL RESEARCH 16(6):685-692
Regales L; Giraldo P; Garcia-DIaz A; Lavado A; Montoliu L
Identification and functional validation of a 5 ' upstream regulatory sequence in the human tyrosinase gene homologous to the locus control region of the mouse tyrosinase gene
00
332166278 2003 PLANT CELL 15(8):1749-1770
Toledo-Ortiz G; Huq E; Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family
010
333933279 2003 PLOS BIOLOGY 1(2):156-160
Hardison RC
Comparative genomics
00
334141281 2003 PLOS BIOLOGY 1(3):410-419
Sharov AA; Piao YL; Matoba R; Dudekula DB; Qian Y; Vanburen V; Falco G; Martin PR; Stagg CA; Bassey UC; Wang YX; Carter MG; Hamatani T; Aiba K; Akutsu H; Sharova L; Tanaka TS; Kimber WL; Yoshikawa T; Jaradat SA; Pantano S; Nagaraja R; Boheler KR; Taub D; Hodes RJ; Longo DL; Schlessinger D; Keller J; Klotz E; Kelsoe G; Umezawa A; Vescovi AL; Rossant J; Kunath T; Hogan BLM; Curci A; D'Urso M; Kelso J; Hide W; Ko MSH
Transcriptome analysis of mouse stem cells and early embryos
01
335247282 2003 PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES 79(2):34-50
Yoshida T; Yoshimura K
Outline of disease gene hunting approaches in the Millennium Genome Project of Japan
00
336213285 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(6):3025-3026
Adams MD; Sutton GG; Smith HO; Myers EW; Venter JC
The independence of our genome assemblies
02
337131286 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(7):3883-3888
Moore JB; Blanchard RK; Cousins RJ
Dietary zinc modulates gene expression in murine thymus: Results from a comprehensive differential display screening
07
338137290 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(17):10043-10048
Zylka MJ; Dong XZ; Southwell AL; Anderson DJ
Atypical expansion in mice of the sensory neuronspecific Mrg G protein-coupled receptor family
04
339129292 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12147-12152
Iourgenko V; Zhang WJ; Mickanin C; Daly I; Jiang C; Hexham JM; Orth AP; Miraglia L; Meltzer J; Garza D; Chirn GW; McWhinnie E; Cohen D; Skelton J; Terry R; Yu Y; Bodian D; Buxton FP; Zhu JA; Song CZ; Labow MA
Identification of a family of cAMP response element-binding protein coactivators by genome-scale functional analysis in mammalian cells
02
340136293 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12235-12240
Niimura Y; Nei M
Evolution of olfactory receptor genes in the human genome
03
#LCRNCRNodes / Authors / DateLCSGCS
341167294 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(22):12660-12665
Wang J; Webb G; Cao Y; Steiner DF
Contrasting patterns of expression of transcription factors in pancreatic alpha and beta cells
02
342230297 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15754-15757
Hughes AL; Packer B; Welch R; Bergen AW; Chanock SJ; Yeager M
Widespread purifying selection at polymorphic sites in human protein-coding loci
00
343220298 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15776-15781
Shiraki T; Kondo S; Katayama S; Waki K; Kasukawa T; Kawaji H; Kodzius R; Watahiki A; Nakamura M; Arakawa T; Fukuda S; Sasaki D; Podhajska A; Harbers M; Kawai J; Carninci P; Hayashizaki Y
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
02
344156299 2003 PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 270(1522):1331-1340
Fronicke L; Wienberg J; Stone G; Adams L; Stanyon R
Towards the delineation of the ancestral eutherian genome organization: comparative genome maps of human and the African elephant (Loxodonta africana) generated by chromosome painting
01
345158300 2003 PROTEIN ENGINEERING 16(12):881-888
Bhaduri A; Sowdhamini R
A genome-wide survey of human tyrosine phosphatases
00
3461104301 2003 RUSSIAN JOURNAL OF GENETICS 39(9):973-985
Makeeva NV; Pestova AA; Borodina TA; Madera DA; Ivanov DV; Stepanova EV; Baranova AV
Theoretical and applied aspects of comparative genomics of vertebrates
00
347171302 2003 SCANDINAVIAN JOURNAL OF IMMUNOLOGY 58(2):155-164
Olofsson P; Holmdahl R
Positional cloning of Ncf1 - a piece in the puzzle of arthritis genetics
01
34836303 2003 SCIENCE 299(5611):1331-1333
Gibbs RA; Nelson DL
Primate shadow play
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349418307 2003 SCIENCE 301(5641):1854-1855
O'Brien SJ; Murphy WJ
A dog's breakfast?
01
35056309 2003 SCIENCE 302(5647):997-+
Johnston M; Stormo GD
Heirlooms in the attic
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351130311 2003 SEMINARS IN IMMUNOLOGY 15(4):233-238
de Bono B; Trowsdale J
Exploring the immunogenome with bioinformatics
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35219312 2003 TRANSGENIC RESEARCH 12(6):739-741
Rani PU; Khillan JS
A simple and convenient method for preparing chimeric animals from embryonic stem (ES) cells
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353128314 2003 TRENDS IN ENDOCRINOLOGY AND METABOLISM 14(3):100-102
Insel PA
Location, location, location
03
354245315 2003 TRENDS IN GENETICS 19(4):200-206
Hedges SB; Kumar S
Genomic clocks and evolutionary timescales
012
355160319 2003 TRENDS IN GENETICS 19(9):505-513
Steward RE; MacArthur MW; Laskowski RA; Thornton JM
Molecular basis of inherited diseases: a structural perspective
00
356126320 2003 TRENDS IN GENETICS 19(10):530-536
van de Lagemaat LN; Landry JR; Mager DL; Medstrand P
Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
03
357262321 2003 TRENDS IN GENETICS 19(11):640-648
Landry JR; Mager DL; Wilhelm BT
Complex controls: the role of alternative promoters in mammalian genomes
01
358116323 2003 TRENDS IN GENETICS 19(12):678-681
Gao LZ; Zhang JZ
Why are some human disease-associated mutations fixed in mice?
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359115324 2003 TRENDS IN MICROBIOLOGY 11(4):150-151
Gordon JI; Stappenbeck TS; Hooper LV
Response from Jeffrey I. Gordon et al.: Commensal bacteria make a difference
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360117325 2003 TRENDS IN MOLECULAR MEDICINE 9(2):43-45
Dudley JP
Tag, you're hit: retroviral insertions identify genes involved in cancer
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36116326 2003 TRENDS IN PHARMACOLOGICAL SCIENCES 24(5):212-213
Haystead TAJ
Response to Petri: Can a proteornics strategy be used to identify the anti-malarial activity of chloroquine?
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3621216327 2003 VIRUS GENES 26(3):291-316
Gifford R; Tristem M
The evolution, distribution and diversity of endogenous retroviruses
03
3631110328 2003 ZOOLOGICAL STUDIES 42(3):391-404
Freire NP; Tennant MR; Miyamoto MM
Microarray analyses of reptiles and amphibians: Applications in ecology and evolution
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364176329 2004 ADDICTION BIOLOGY 9(1):11-18
Fan LI; Bellinger FP; Ge YL; Wilce PA
Genetic study of alcoholism and novel gene expression in the alcoholic brain
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3652101330 2004 AGEING RESEARCH REVIEWS 3(2):125-141
de Magalhaes JP; Toussaint O
How bioinformatics can help reverse engineer human aging
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366156331 2004 AMERICAN JOURNAL OF HUMAN GENETICS 74(2):197-207
Wen G; Mahata SK; Cadman P; Mahata M; Ghosh S; Mahapatra NR; Rao FW; Stridsberg M; Smith DW; Mahboubi P; Schork NJ; O'Connor DT; Hamilton BA
Both rare and common polymorphisms contribute functional variation at CHGA, a regulator of catecholamine physiology
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367150332 2004 AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY 286(3):F590-F596
Qi ZH; Whitt I; Mehta A; Jin JP; Zhao M; Harris RC; Fogo AB; Breyer MD
Serial determination of glomerular filtration rate in conscious mice using FITC-inulin clearance
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368121333 2004 ANALYTICAL CHEMISTRY 76(2):345-350
Gustafsson M; Hirschberg D; Palmberg C; Jornvall H; Bergman T
Integrated sample preparation and MALDI mass spectrometry on a microfluidic compact disk
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369148334 2004 ANALYTICAL CHEMISTRY 76(3):672-683
Sharp JS; Becker JM; Hettich RL
Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry
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370351335 2004 ANNUAL REVIEW OF MEDICINE 55():1-13
Austin CP
The impact of the completed human genome sequence on the development of novel therapeutics for human disease
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371427336 2004 BIOINFORMATICS 20(2):148-154
Liu L; Gong G; Liu Y; Natarajan S; Larkin DM; Everts-van der Wind A; Rebeiz M; Beever JE
Multi-species comparative mapping in silico using the COMPASS strategy
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372921337 2004 BIOINFORMATICS 20(5):636-U122
Shah N; Couronne O; Pennacchio LA; Brudno M; Batzoglou S; Bethel EW; Rubin EM; Hamann B; Dubchak I
Phylo-VISTA: interactive visualization of multiple DNA sequence alignments
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373126338 2004 BIOINFORMATICS 20(5):727-U518
Sun H; Davuluri RV
Java-based application framework for visualization of gene regulatory region annotations
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374326339 2004 BIOINFORMATICS 20(7):1053-1059
Choi KP; Zeng FF; Zhang LX
Good spaced seeds for homology search
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375125340 2004 BIOINFORMATICS 20(8):1285-1291
Gan HH; Fera D; Zorn J; Shiffeldrim N; Tang M; Laserson U; Kim N; Schlick T
RAG: RNA-As-Graphs database - concepts, analysis, and features
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376238341 2004 BMC BIOINFORMATICS 5():-
Swart EC; Hide WA; Seoighe C
FRAGS: estimation of coding sequence substitution rates from fragmentary data
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37725342 2004 BMC BIOINFORMATICS 5():-
Chi B; deLeeuw RJ; Coe BP; MacAulay C; Lam WL
SeeGH - A software tool for visualization of whole genome array comparative genomic hybridization data
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378865343 2004 BMC BIOINFORMATICS 5():-
Pollard DA; Bergman CM; Stoye J; Celniker SE; Eisen MB
Benchmarking tools for the alignment of functional noncoding DNA
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379321344 2004 BMC EVOLUTIONARY BIOLOGY 4():-
Kendal WS
A scale invariant clustering of genes on human chromosome 7
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380148345 2004 BMC GENETICS 5():-
Peirce JL; Lu L; Gu J; Silver LM; Williams RW
A new set of BXD recombinant inbred lines from advanced intercross populations in mice
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#LCRNCRNodes / Authors / DateLCSGCS
381218346 2004 BMC GENOMICS 5():-
Watson SK; deLeeuw RJ; Ishkanian AS; Malloff CA; Lam WL
Methods for high throughput validation of amplified fragment pools of BAC DNA for constructing high resolution CGH arrays
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382179347 2004 BRAIN RESEARCH 1000(1-2):156-173
Yu LQ; Frith MC; Suzuki Y; Peterfreund RA; Gearan T; Sugano S; Schwarzschild MA; Weng ZP; Fink JS; Chen JF
Characterization of genomic organization of the adenosine A(2A) receptor gene by molecular and bioinformatics analyses
00
3833113348 2004 CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE 26(1):19-30
Hsiang T; Baillie DL
Recent progress, developments, and issues in comparative fungal genomics
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3841137349 2004 CANADIAN JOURNAL OF ZOOLOGY-REVUE CANADIENNE DE ZOOLOGIE 82(2):375-390
Oliveira G; Rodrigues NB; Romanha AJ; Bahia D
Genome and genomics of schistosomes
01
385121351 2004 CELLULAR AND MOLECULAR LIFE SCIENCES 61(4):488-496
Eketjall S; Jornvall H; Lonnerberg P; Kobayashi S; Ibanez CF
Recent evolutionary origin within the primate lineage of two pseudogenes with similarity to members of the transforming growth factor-beta superfamily
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386143352 2004 CHINESE SCIENCE BULLETIN 49(2):146-152
Tian M; Xiong YL; Wang WY; Zhang YP
Molecular genetic basis for the rhino mouse from Chinese KM subcolony
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387229353 2004 CHROMOSOME RESEARCH 12(3):251-262
Xu HL; Qian YP; Nie WH; Chi JX; Yang FT; Su B
Construction, characterization and chromosomal mapping of bacterial artificial chromosome (BAC) library of Yunnan snub-nosed monkey (Rhinopithecus bieti)
00
388239354 2004 CURRENT OPINION IN PLANT BIOLOGY 7(2):102-107
Martienssen RA; Rabinowicz PD; O'Shaughnessy A; McCombie WR
Sequencing the maize genome
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389231355 2004 DEVELOPMENT GENES AND EVOLUTION 214(2):64-71
Marikawa Y; Fujita TC; Alarcon VB
An enhancer-trap LacZ transgene reveals a distinct expression pattern of Kinesin family 26B in mouse embryos
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390163356 2004 DEVELOPMENTAL BIOLOGY 265(2):462-477
Kleinjan DA; Seawright A; Childs AJ; van Heyningen V
Conserved elements in Pax6 intron 7 involved in (auto)regulation and alternative transcription
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391142357 2004 DEVELOPMENTAL BIOLOGY 268(1):7-23
Ficker M; Powles N; Warr N; Pirvola U; Maconochie M
Analysis of genes from inner ear developmental-stage cDNA subtraction reveals molecular regionalization of the otic capsule
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392153358 2004 DEVELOPMENTAL BIOLOGY 269(1):276-285
Svoboda P; Stein P; Anger M; Bernstein E; Hannon GJ; Schultz RM
RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos
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393161359 2004 DIFFERENTIATION 72(2-3):92-102
Calegari F; Marzesco AM; Kittler R; Buchholz F; Huttner WB
Tissue-specific RNA interference in post-implantation mouse embryos using directional electroporation and whole embryo culture
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394125360 2004 DNA AND CELL BIOLOGY 23(3):167-173
Di Tommaso A; Soler C; Roos C; Kitzis A; Ladeveze V
The ink4a/arf locus evolution in primates: Characterization of three ARF sequences
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395135361 2004 DNA REPAIR 3(1):33-41
Dore AS; Drake ACB; Brewerton SC; Blundell TL
Identification of DNA-PK in the arthropods - Evidence for the ancient ancestry of vertebrate non-homologous end-joining
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396131362 2004 EUROPEAN JOURNAL OF CELL BIOLOGY 83(1):19-26
Hesse M; Zimek A; Weber K; Magin TM
Comprehensive analysis of keratin gene clusters in humans and rodents
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397149363 2004 EUROPEAN JOURNAL OF HUMAN GENETICS 12(2):139-149
Kaufmann D; Kenner O; Nurnberg P; Vogel W; Bartelt B
InNF1, CFTR, PER3, CARS and SYT7, alternatively included exons show higher conservation of surrounding intron sequences than constitutive exons
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398293364 2004 EUROPEAN JOURNAL OF IMMUNOLOGY 34(1):7-17
Trowsdale J; Parham P
Defense strategies and immunity-related genes
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399115365 2004 EXPERIMENTAL ANIMALS 53(2):151-154
Sakai T; Miura I; Yamada-Ishibashi S; Wakita Y; Kohara Y; Yamazaki Y; Inoue T; Kominami R; Moriwaki K; Shiroishi T; Yonekawa H; Kikkawa Y
Update of mouse microsatellite database of Japan (MMDBJ)
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400131366 2004 EXPERIMENTAL GERONTOLOGY 39(6):913-916
Martin GM
New opportunities for genetic approaches to aging research using Roy Walford's favorite animal
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