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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by LCS.
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#LCRNCRNodes / Authors / DateLCSGCS
1011129254 2003 NATURE REVIEWS MOLECULAR CELL BIOLOGY 4(11):865-877
Curcio MJ; Derbyshire KM
The outs and ins of transposition: From mu to kangaroo
11
102157263 2003 NUCLEIC ACIDS RESEARCH 31(16):4929-4940
Yang N; Zhang L; Zhang Y; Kazazian HH
An important role for RUNX3 in human L1 transcription and retrotransposition
14
103120287 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(10):6233-6238
Wainwright MS; Rossi J; Schavocky J; Crawford S; Steinhorn D; Velentza AV; Zasadzki M; Shirinsky V; Jia YZ; Haiech J; Van Eldik LJ; Watterson DM
Protein kinase involved in lung injury susceptibility: Evidence from enzyme isoform genetic knockout and in vivo inhibitor treatment
12
104166288 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(12):7181-7188
Wildman DE; Uddin M; Liu GZ; Grossman LI; Goodman M
Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: Enlarging genus Homo
112
105128296 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(24):14109-14114
Zambrowicz BP; Abuin A; Ramirez-Solis R; Richter LJ; Piggott J; BeltrandelRio H; Buxton EC; Edwards J; Finch RA; Friddle CJ; Gupta A; Hansen G; Hu Y; Huang WH; Jaing C; Key BW; Kipp P; Kohlhauff B; Ma ZQ; Markesich D; Payne R; Potter DG; Qian N; Shaw J; Schrick J; Shi ZZ; Sparks MJ; Van Sligtenhorst I; Vogel P; Walke W; Xu NH; Zhu QC; Person C; Sands AT
Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention
15
106178313 2003 TRENDS IN ECOLOGY & EVOLUTION 18(6):292-298
Zhang JZ
Evolution by gene duplication: an update
111
107220316 2003 TRENDS IN GENETICS 19(6):306-310
Nekrutenko A; Chung WY; Li WH
An evolutionary approach reveals a high protein-coding capacity of the human genome
12
108129318 2003 TRENDS IN GENETICS 19(9):485-488
Gregory TR
Is small indel bias a determinant of genome size?
11
109123322 2003 TRENDS IN GENETICS 19(12):674-678
Volff JN; Bouneau L; Ozouf-Costaz C; Fischer C
Diversity of retrotransposable elements in compact pufferfish genomes
12
110349350 2004 CELL 116(4):499-509
Cawley S; Bekiranov S; Ng HH; Kapranov P; Sekinger EA; Kampa D; Piccolboni A; Sementchenko V; Cheng J; Williams AJ; Wheeler R; Wong B; Drenkow J; Yamanaka M; Patel S; Brubaker S; Tammana H; Helt G; Struhl K; Gingeras TR
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
17
#LCRNCRNodes / Authors / DateLCSGCS
111547391 2004 GENOME RESEARCH 14(2):273-279
Halligan DL; Eyre-Walker A; Andolfatto P; Keightley PD
Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila
11
112532397 2004 GENOME RESEARCH 14(4):507-516
Bourque G; Pevzner PA; Tesler G
Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse, and rat genomes
11
113545398 2004 GENOME RESEARCH 14(4):517-527
Yang S; Smit AF; Schwartz S; Chiaromonte F; Roskin KM; Haussler D; Miller W; Hardison RC
Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes
11
114570399 2004 GENOME RESEARCH 14(4):528-538
Jensen-Seaman MI; Furey TS; Payseur BA; Lu YT; Roskin KM; Chen CF; Thomas MA; Haussler D; Jacob HJ
Comparative recombination rates in the rat, mouse, and human genomes
11
115341402 2004 GENOME RESEARCH 14(4):555-566
Taylor MS; Ponting CP; Copley RR
Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes
11
116444403 2004 GENOME RESEARCH 14(4):567-573
Makova KD; Yang S; Chiaromonte F
Insertions and deletions are male biased too: A whole-genome analysis in rodents
11
117515404 2004 GENOME RESEARCH 14(4):574-579
Yap VB; Pachter L
Identification of evolutionary hotspots in the rodent genomes
11
1182115405 2004 GENOME RESEARCH 14(4):591-602
Emes RD; Beatson SA; Ponting CP; Goodstadt L
Evolution and comparative genomics of odorant-and pheromone-associated genes in rodents
11
119232408 2004 GENOME RESEARCH 14(4):640-650
Vitt U; Gietzen D; Stevens K; Wingrove J; Becha S; Bulloch S; Burrill J; Chawla N; Chien J; Crawford M; Ison C; Kearney L; Kwong M; Park J; Policky J; Weiler M; White R; Xu YM; Daniels S; Jacob H; Jensen-Seaman MI; Lazar J; Stuve L; Schmidt J
Identification of candidate disease genes by EST alignments, synteny, and expression and verification of ensembl genes on rat chromosome 1q43-54
11
120517409 2004 GENOME RESEARCH 14(4):661-664
Dewey C; Wu JQ; Cawley S; Alexandersson M; Gibbs R; Pachter L
Accurate identification of novel human genes through simultaneous gene prediction in human, mouse, and rat
11
#LCRNCRNodes / Authors / DateLCSGCS
121422410 2004 GENOME RESEARCH 14(4):672-678
Kalafus KJ; Jackson AR; Milosavljevic A
Pash: Efficient genome-scale sequence anchoring by positional hashing
11
122113411 2004 GENOME RESEARCH 14(4):679-684
Chen R; Sodergren E; Weinstock GM; Gibbs RA
Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project
11
123726412 2004 GENOME RESEARCH 14(4):685-692
Brudno M; Poliakov A; Salamov A; Cooper GM; Sidow A; Rubin EM; Solovyev V; Batzoglou S; Dubchak I
Automated whole-genome multiple alignment of rat, mouse, and human
11
124325413 2004 GENOME RESEARCH 14(4):700-707
Kolbe D; Taylor J; Elnitski L; Eswara P; Li J; Miller W; Hardison R; Chiaromonte F
Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat
11
125726414 2004 GENOME RESEARCH 14(4):708-715
Blanchette M; Kent WJ; Riemer C; Elnitski L; Smit AFA; Roskin KM; Baertsch R; Rosenbloom K; Clawson H; Green ED; Haussler D; Miller W
Aligning multiple genomic sequences with the threaded blockset aligner
11
126539415 2004 GENOME RESEARCH 14(4):721-732
Havlak P; Chen R; Durbin KJ; Egan A; Ren YR; Song XZ; Weinstock GM; Gibbs RA
The atlas genome assembly system
12
127156417 2004 GENOME RESEARCH 14(4):766-779
Krzywinski M; Wallis J; Gosele C; Bosdet I; Chiu R; Graves T; Hummel O; Layman D; Mathewson C; Wye N; Zhu B; Albracht D; Asano J; Barber S; Brown-John M; Chan S; Chand S; Cloutier A; Davito J; Fjell C; Gaige T; Ganten D; Girn N; Guggenheimer K; Himmelbauer H; Kreitler T; Leach S; Lee D; Lehrach H; Mayo M; Mead K; Olson T; Pandoh P; Prabhu AL; Shin H; Tanzer S; Thompson J; Tsai M; Walker J; Yang G; Sekhon M; Hillier L; Zimdahl H; Marziali A; Osoegawa K; Zhao S; Siddiqui A; de Jong PJ; Warren W; Mardis E; McPherson JD; Wilson R; Hubner N; Jones S; Marra M; Schein J
Integrated and sequence-ordered BAC and YAC-based physical maps for the rat genome
11
128123418 2004 GENOME RESEARCH 14(4):780-785
Osoegawa K; Zhu BL; Shu CL; Ren T; Cao Q; Vessere GM; Lutz MM; Jensen-Seaman MI; Zhao SY; de Jong PJ
BAC resources for the rat genome project
11
1291032422 2004 GENOME RESEARCH 14(5):852-859
Dermitzakis ET; Kirkness E; Schwarz S; Birney E; Reymond A; Antonarakis SE
Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment
11
130245427 2004 GENOMICS 83(1):76-84
Rahman L; Bliskovski V; Kaye FJ; Zajac-Kaye M
Evolutionary conservation of a 2-kb intronic sequence flanking a tissue-specific alternative exon in the PTBP2 gene
11
#LCRNCRNodes / Authors / DateLCSGCS
131537456 2004 JOURNAL OF PHYSIOLOGY-LONDON 554(1):31-39
Nobrega MA; Pennacchio LA
Comparative genomic analysis as a tool for biological discovery
15
132256457 2004 JOURNAL OF PHYSIOLOGY-LONDON 554(1):56-63
McBride MW; Charchar FJ; Graham D; Miller WH; Strahorn P; Carr FJ; Dominiczak AF
Functional genomics in rodent models of hypertension
11
13318483 2004 NATURE 428(6982):464-466
Abbott A
The Renaissance rat
13
134248486 2004 NATURE 428(6982):529-535
Grimwood J; Gordon LA; Olsen A; Terry A; Schmutz J; Lamerdin J; Hellsten U; Goodstein D; Couronne O; Gyamfi MT; Aerts A; Altherr M; Ashworth L; Bajorek E; Black S; Branscomb E; Caenepeel S; Carrano A; Caoile C; Chan YM; Christensen M; Cleland CA; Copeland A; Dalin E; Dehal P; Denys M; Detter JC; Escobar J; Flowers D; Fotopulos D; Garcia C; Georgescu AM; Glavina T; Gomez M; Gonzales E; Groza M; Hammon N; Hawkins T; Haydu L; Ho I; Huang W; Israni S; Jett J; Kadner K; Kimball H; Kobayashi A; Larionov V; Leem SH; Lopez F; Lou YL; Lowry S; Malfatti S; Martinez D; McCready P; Medina C; Morgan J; Nelson K; Nolan M; Ovcharenko I; Pitluck S; Pollard M; Popkie AP; Predki P; Quan G; Ramirez L; Rash S; Retterer J; Rodriguez A; Rogers S; Salamov A; Salazar A; She XW; Smith D; Slezak T; Solovyev V; Thayer N; Tice H; Tsai M; Ustaszewska A; Vo N; Wagner M; Wheeler J; Wu K; Xie G; Yang J; Dubchak I; Furey TS; DeJong P; Dickson M; Gordon D; Eichler EE; Pennacchio LA; Richardson P; Stubbs L; Rokhsar DS; Myers RM; Rubin EM; Lucas SM
The DNA sequence and biology of human chromosome 19
12
1351098498 2004 NATURE REVIEWS GENETICS 5(4):276-287
Wasserman WW; Sandelin A
Applied bioinformatics for the identification of regulatory elements
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136140518 2004 OPTOMETRY AND VISION SCIENCE 81(2):99-110
Schaeffel F; Burkhardt E; Howland HC; Williams RW
Measurement of refractive state and deprivation myopia in two strains of mice
11
137169533 2004 RNA-A PUBLICATION OF THE RNA SOCIETY 10(5):828-840
Carmel I; Tal S; Vig I; Ast G
Comparative analysis detects dependencies among the 5 ' splice-site positions
11
138225542 2004 TRENDS IN GENETICS 20(1):1-4
Kreahling J; Graveley BR
The origins and implications of Aluternative splicing
11
139116547 2004 TRENDS IN PARASITOLOGY 20(2):49-52
Mongin E; Louis C; Holt RA; Birney E; Collins FH
The Anopheles gambiae genome: an update
12
1401951 2002 JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA 7(3):327-345
Rijnkels M
Multispecies comparison of the casein gene loci and evolution of casein gene family
01
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1411414 2003 ACTA BIOCHIMICA POLONICA 50(1):81-102
Wlodawer A; Li M; Gustchina A; Oyama H; Dunn BM; Oda K
Structural and enzymatic properties of the sedolisin family of serine-carboxyl peptidases
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U1A RNA-binding domain at 1.8 angstrom resolution
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1431408 2003 AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY 285(6):C1356-C1366
Zou AR; Lin ZX; Humble M; Creech CD; Wagoner PK; Krafte D; Jegla TJ; Wickenden AD
Distribution and functional properties of human KCNH8 (Elk1) potassium channels
00
1441269 2003 AMERICAN JOURNAL OF PSYCHIATRY 160(4):616-620
Insel TR; Collins FS
Psychiatry in the genomics era
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14512111 2003 AMERICAN SCIENTIST 91(3):234-241
Caporale LH
Foresight in genome evolution
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14616512 2003 AMYOTROPHIC LATERAL SCLEROSIS AND OTHER MOTOR NEURON DISORDERS 4(4):249-257
Hafezparast M; Ahmad-Annuar A; Hummerich H; Shah P; Ford M; Baker C; Bowen S; Martin JE; Fisher EMC
Paradigms for the identification of new genes in motor neuron degeneration
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14717213 2003 ANNALS ACADEMY OF MEDICINE SINGAPORE 32(2):169-175
Tang CL
Chemoprevention of colorectal cancer - Experimental approach and clinical applications
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14815514 2003 ANTIVIRAL RESEARCH 59(3):181-191
Moreau JM; Dyer KD; Bonville CA; Nitto T; Vasquez NL; Easton AJ; Domachowske JB; Rosenberg HF
Diminished expression of an antiviral ribonuclease in response to pneumovirus infection in vivo
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14912915 2003 AUTOIMMUNITY REVIEWS 2(4):177-180
Alarcon-Riquelme ME
Functional genomics in the study of autoimmune diseases
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15016416 2003 BASIC RESEARCH IN CARDIOLOGY 98(4):219-227
McDonald TG; Van Eyk JE
Mitochondrial proteomics - Undercover in the lipid bilayer
01
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15111517 2003 BEHAVIOR GENETICS 33(5):457-460
Sluyter F; Schalkwyk LC
Introduction to the special issue - Aggression across species
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15218418 2003 BEHAVIOR GENETICS 33(5):563-574
Sluyter F; Arseneault L; Moffitt TE; Veenema AH; de Boer S; Koolhaas JM
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15313019 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 301(3):633-640
Saito R; Suzuki H; Hayashizaki Y
Global insights into protein complexes through integrated analysis of the reliable interactome and knockout lethality
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15413520 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 302(1):23-28
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Smooth muscle uses another promoter to express primarily a form of human Ca(V)1.2 L-type calcium channel different from the principal heart form
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15514521 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 309(4):709-717
Roskoski R
STI-571: an anticancer protein-tyrosine kinase inhibitor
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15613622 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 311(4):884-890
Kremenskoy M; Kremenska Y; Ohgane J; Hattori N; Tanaka S; Hashizume K; Shiota K
Genome-wide analysis of DNA methylation status of CpG islands in embryoid bodies, teratomas, and fetuses
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15711223 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 312(3):825-830
Nakayama M; Ohara O
A system using convertible vectors for screening soluble recombinant proteins produced in Escherichia coli from randomly fragmented cDNAs
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15814824 2003 BIOCHEMICAL JOURNAL 376():135-145
Denecke B; Graber S; Schafer C; Heiss A; Woltje M; Jahnen-Dechent W
Tissue distribution and activity testing suggest a similar but not identical function of fetuin-B and fetuin-A
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15911525 2003 BIOCHEMICAL SOCIETY TRANSACTIONS 31():437-443
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A new paradigm for drug discovery: integrating clinical, genetic, genomic and molecular phenotype data to identify drug targets
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Ward JO; Reinholdt LG; Hartford SA; Wilson LA; Munroe RJ; Schimenti KJ; Libby BJ; O'Brien M; Pendola JK; Eppig J; Schimenti JC
Toward the genetics of mammalian reproduction: Induction and mapping of gametogenesis mutants in mice
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16111030 2003 BIOTECHNIQUES 34(6):1136-+
Conrad M; Brielmeier M; Wurst W; Bornkamm GW
Optimized vector for conditional gene targeting in mouse embryonic stem cells
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Side effects of retroviral gene transfer into hematopoietic stem cells
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The COG database: an updated version includes eukaryotes
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Gene discovery in the hamster: a comparative genomics approach for gene annotation by sequencing of hamster testis cDNAs
01
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Kurowski MA; Bhagwat AS; Papaj G; Bujnicki JM
Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB
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Wang M; Lemon WJ; Liu GJ; Wang Y; Iraqi FA; Malkinson AM; You M
Fine mapping and identification of candidate pulmonary adenoma susceptibility 1 genes using advanced intercross lines
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16848538 2003 CELLULAR MICROBIOLOGY 5(12):861-873
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Genome sequencing and comparative genomics of tropical disease pathogens
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Wu BJ; Mao HH; Shao YX; Xue F; Li HD
Four kinds of ENU-induced white spot mice and chromosome locations of the mutant genes
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17016840 2003 CHRONOBIOLOGY INTERNATIONAL 20(3):417-440
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Effects of prolonged exposure to darkness on circadian photic responsiveness in the mouse
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17119141 2003 CIRCULATION RESEARCH 92(9):953-961
Winslow RL; Boguski MS
Genome informatics - Current status and future prospects
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Goodman N; McCormick K; Goldowitz D; Hockly E; Johnson C; Kristal B; MacDonald M; Truant R; van Beuzekom M
Plans for HDBase - a research community website for Huntington's disease
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17325743 2003 CNS SPECTRUMS 8(8):578-+
Tecott LH; Abdallah L
Mouse genetic approaches to feeding regulation: Serotonin 5-HT2C receptor mutant mice
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17413844 2003 COMPARATIVE MEDICINE 53(2):119-125
Linder CC
Mouse nomenclature and maintenance of genetically engineered mice
01
175124745 2003 CRITICAL REVIEWS IN IMMUNOLOGY 23(3):199-250
Glant TT; Finnegan A; Mikecz K
Proteoglycan-induced arthritis: Immune regulation, cellular mechanisms, and genetics
04
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Quantitative polymerase chain reaction-based assay for estimating DNA yield extracted from domestic cat specimens
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17712647 2003 CURRENT BIOLOGY 13(17):1518-1523
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A co-opted gypsy-type LTR-retrotransposon is conserved in the genomes of humans, sheep, mice, and rats
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17813449 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(1):14-19
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Genomic approaches to identification of tumour-susceptibility genes using mouse models
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17913650 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(3):278-283
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Rodent models of genetic disease
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18076153 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):611-616
Li H; Wang W
Dissecting the transcription networks of a cell using computational genomics
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18135654 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):617-622
Swanson WJ
Adaptive evolution of genes and gene families
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18224256 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):629-635
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Duplicate, decouple, disperse: the evolutionary transience of human centromeric regions
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18325957 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):651-658
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A genomic view of lymphocyte development - Opinion
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Quantitative trait locus mapping for atherosclerosis susceptibility
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Going global: Protein expression profiling using shotgun mass spectrometry
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18717061 2003 CURRENT OPINION IN NEUROLOGY 16(4):451-458
Ahmad-Annuar A; Tabrizi SJ; Fisher EMC
Mouse models as a tool for understanding neurodegenerative diseases
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1881562 2003 CURRENT OPINION IN PHARMACOLOGY 3(3):277-279
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Musculoskeletal diseases: from complex genetics to therapy - Editorial overview
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18915163 2003 CURRENT OPINION IN STRUCTURAL BIOLOGY 13(3):344-352
Karlin S; Mrazek J; Gentles AJ
Genome comparisons and analysis
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Man O; Atarot T; Sadot A; Olender T; Lancet D
From subgenome analysis to protein structure
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Mapping of 195 genes in cattle and updated comparative map with man, mouse, rat and pig
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19212866 2003 CYTOGENETIC AND GENOME RESEARCH 102(1-4):163-172
Amarger V; Erlandsson R; Pielberg G; Jeon JT; Andersson L
Comparative sequence analysis of the PRKAG3 region between human and pig: evolution of repetitive sequences and potential new exons
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19314267 2003 CYTOGENETIC AND GENOME RESEARCH 102(1-4):244-248
Greer KA; Cargill EJ; Cox ML; Clark LA; Tsai KL; Credille KM; Dunstan RW; Venta PJ; Murphy KE
Digging up the canine genome - a tale to wag about
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19425968 2003 DEVELOPMENT 130(26):6485-6495
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Morpholino-based gene knockdown screen of novel genes with developmental function in Ciona intestinalis
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19517369 2003 DEVELOPMENT GENES AND EVOLUTION 213(5-6):291-302
Chiba S; Awazu S; Itoh M; Chin-Bow ST; Satoh N; Satou Y; Hastings KEM
A genomewide survey of developmentally relevant genes in Ciona intestinalis - IX. Genes for muscle structural proteins
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196115970 2003 DEVELOPMENT OF AUDITORY AND VESTIBULAR SYSTEMS 3: MOLECULAR DEVELOPMENT OF THE INNER EAR 57():45-+
Quint E; Steel KP
Use of mouse genetics for studying inner ear development
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19715571 2003 DEVELOPMENTAL BIOLOGY 258(2):432-442
Moss EG; Tang LJ
Conservation of the heterochronic regulator Lin-28, its developmental expression and microRNA complementary sites
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19816772 2003 DEVELOPMENTAL BIOLOGY 264(2):391-406
Elms P; Siggers P; Napper D; Greenfield A; Arkell R
Zic2 is required for neural crest formation and hindbrain patterning during mouse development
02
19915073 2003 DEVELOPMENTAL BRAIN RESEARCH 144(2):159-168
Vourc'h P; Dessay S; Mbarek O; Vedrine SM; Muh JP; Andres C
The oligodendrocyte-myelin glycoprotein gene is highly expressed during the late stages of myelination in the rat central nervous system
00
20013674 2003 DEVELOPMENTAL DYNAMICS 228(4):606-616
Yang LV; Heng HH; Wan JM; Southwood CM; Gow A; Li L
Alternative promoters and polyadenylation regulate tissue-specific expression of hemogen isoforms during hematopoiesis and spermatogenesis
00

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