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Fri Jul 16 11:16:21 2004

Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
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#LCRNCRNodes / Authors / DateLCSGCS
101362420 2004 GENOME RESEARCH 14(5):802-811
Castillo-Davis CI; Kondrashov FA; Hartl DL; Kulathinal RJ
The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint
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102328423 2004 GENOME RESEARCH 14(5):942-950
Curwen V; Eyras E; Andrews TD; Clarke L; Mongin E; Searle SMJ; Clamp M
The Ensembl automatic gene annotation system
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103345465 2004 MAMMALIAN GENOME 15(5):344-351
Buchner DA; Seburn KL; Frankel WN; Meisler MH
Three ENU-induced neurological mutations in the pore loop of sodium channel Scn8a (Na(v)1.6) and a genetically linked retinal mutation, rd13
00
104354471 2004 MOLECULAR BIOLOGY AND EVOLUTION 21(2):410-417
Filatov DA
A gradient of silent substitution rate in the human pseudoautosomal region
00
105347474 2004 MOLECULAR BIOLOGY AND EVOLUTION 21(6):984-990
Meunier J; Duret L
Recombination drives the evolution of GC-content in the human genome
00
106322475 2004 MOLECULAR BIOLOGY AND EVOLUTION 21(6):1008-1013
Friedman R; Hughes AL
Two patterns of genome organization in mammals: The chromosomal distribution of duplicate genes in human and muse
00
107325489 2004 NATURE 429(6991):558-562
Bazykin GA; Kondrashov FA; Ogurtsov AY; Sunyaev S; Kondrashov AS
Positive selection at sites of multiple amino acid replacements since rat-mouse divergence
00
108334490 2004 NATURE 430(6995):35-44
Dujon B; Sherman D; Fischer G; Durrens P; Casaregola S; Lafontaine I; de Montigny J; Marck C; Neuveglise C; Talla E; Goffard N; Frangeul L; Aigle M; Anthouard V; Babour A; Barbe V; Barnay S; Blanchin S; Beckerich JM; Beyne E; Bleykasten C; Boisrame A; Boyer J; Cattolico L; Confanioleri F; de Daruvar A; Despons L; Fabre E; Fairhead C; Ferry-Dumazet H; Groppi A; Hantraye F; Hennequin C; Jauniaux N; Joyet P; Kachouri R; Kerrest A; Koszul R; Lemaire M; Lesur I; Ma L; Muller H; Nicaud JM; Nikolski M; Oztas S; Ozier-Kalogeropoulos O; Pellenz S; Potier S; Richard GF; Straub ML; Suleau A; Swennen D; Tekaia F; Wesolowski-Louvel M; Westhof E; Wirth B; Zeniou-Meyer M; Zivanovic I; Bolotin-Fukuhara M; Thierry A; Bouchier C; Caudron B; Scarpelli C; Gaillardin C; Weissenbach J; Wincker P; Souciet JL
Genome evolution in yeasts
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1093102495 2004 NATURE REVIEWS GENETICS 5(3):190-201
Steinmetz LM; Davis RW
Maximizing the potential of functional genomics
01
110315510 2004 NUCLEIC ACIDS RESEARCH 32():D502-D504
Kikuno R; Nagase T; Nakayama M; Koga H; Okazaki N; Nakajima D; Ohara O
HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE
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#LCRNCRNodes / Authors / DateLCSGCS
111328514 2004 NUCLEIC ACIDS RESEARCH 32(2):776-783
Meyer IM; Durbin R
Gene structure conservation aids similarity based gene prediction
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112360516 2004 NUCLEIC ACIDS RESEARCH 32(5):1774-1782
Shabalina SA; Ogurtsov AY; Rogozin IB; Koonin EV; Lipman DJ
Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals
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113352519 2004 PHARMACOGENETICS 14(1):1-18
Nelson DR; Zeldin DC; Hoffman SMG; Maltais LJ; Wain HM; Nebert DW
Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants
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114367540 2004 TRENDS IN BIOTECHNOLOGY 22(1):23-30
Ruan YJ; Le Ber P; Ng HH; Liu ET
Interrogating the transcriptome
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1152436 2003 AMERICAN JOURNAL OF HUMAN GENETICS 72(6):1527-1535
Hellmann I; Ebersberger I; Ptak SE; Paabo S; Przeworski M
A neutral explanation for the correlation of diversity with recombination rates in humans
714
116210428 2003 BIOESSAYS 25(10):930-939
Mattick JS
Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms
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1172733 2003 BMC BIOINFORMATICS 4():-
Keibler E; Brent MR
Eval: A software package for analysis of genome annotations
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11825743 2003 CNS SPECTRUMS 8(8):578-+
Tecott LH; Abdallah L
Mouse genetic approaches to feeding regulation: Serotonin 5-HT2C receptor mutant mice
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11924256 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):629-635
Jackson M
Duplicate, decouple, disperse: the evolutionary transience of human centromeric regions
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12025957 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):651-658
Deininger PL; Moran JV; Batzer MA; Kazazian HH
Mobile elements and mammalian genome evolution
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#LCRNCRNodes / Authors / DateLCSGCS
12126460 2003 CURRENT OPINION IN MOLECULAR THERAPEUTICS 5(3):285-293
Kislinger T; Emili A
Going global: Protein expression profiling using shotgun mass spectrometry
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12225968 2003 DEVELOPMENT 130(26):6485-6495
Yamada L; Shoguchi E; Wada S; Kobayashi K; Mochizuki Y; Satou Y; Satoh N
Morpholino-based gene knockdown screen of novel genes with developmental function in Ciona intestinalis
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12322778 2003 DNA RESEARCH 10(3):129-136
Hara Y; Shimada I; Kohga H; Ohara O; Koga H
High-throughput production of recombinant antigens for mouse KIAA proteins in Escherichia coli: Computational allocation of possible antigenic regions, and construction of expression plasmids of glutathione-S-transferase-fused antigens by an in vitro recombination-assisted method
01
12423679 2003 DNA RESEARCH 10(4):167-180
Okazaki N; Kikuno R; Ohara R; Inamoto S; Koseki H; Hiraoka S; Saga Y; Nagase T; Ohara O; Koga H
Prediction of the coding sequences of mouse homologues of KIAA gene: III. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries
12
125229114 2003 GENOME BIOLOGY 4(12):-
Gupta BP; Sternberg PW
The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C-elegans
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126249130 2003 GENOME RESEARCH 13(6):1190-1202
Zhang LG; Pavlovic V; Cantor CR; Kasif S
Human-mouse gene identification by comparative evidence integration and evolutionary analysis
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127262137 2003 GENOME RESEARCH 13(6B):1466-1477
Kawasawa Y; McKenzie LM; Hill DP; Bono H; Yanagisawa M
G protein-coupled receptor genes in the FANTOM2 database
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128226145 2003 GENOME RESEARCH 13(7):1631-1637
Sorek R; Ast G
Intronic sequences flanking alternatively spliced exons are conserved between human and mouse
47
129223152 2003 GENOME RESEARCH 13(9):2164-2170
Huang XQ; Wang JM; Aluru S; Yang SP; Hillier L
PCAP: A whole-genome assembly program
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130296154 2003 GENOME RESEARCH 13(12):2541-2558
Zhang ZL; Harrison PM; Liu Y; Gerstein M
Millions of years of evolution preserved: A comprehensive catalog of the processed pseudogenes in the human genome
14
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131232155 2003 GENOME RESEARCH 13(12):2559-2567
Torrents D; Suyama M; Zdobnov E; Bork P
A genome-wide survey of human pseudogenes
14
132267157 2003 GENOME RESEARCH 13(12):2621-2636
Xie T; Rowen L; Aguado B; Ahearn ME; Madan A; Qin SZ; Campbell RD; Hood L
Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse
02
133245158 2003 GENOME RESEARCH 13(12):2651-2657
Cutter AD; Payseur BA; Salcedo T; Estes AM; Good JM; Wood E; Hartl T; Maughan H; Strempel J; Wang BM; Bryan AC; Dellos M
Molecular correlates of genes exhibiting RNAi phenotypes in Caenorhabditis elegans
02
134253160 2003 GENOME RESEARCH 13(12):2747-2753
Clark MS; Edwards YJK; Peterson D; Clifton SW; Thompson AJ; Sasaki M; Suzuki Y; Kikuchi K; Watabe S; Kawakami K; Sugano S; Elgar G; Johnson SL
Fugu ESTs: New resources for transcription analysis and genome annotation
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13528168 2003 HEREDITY 90(2):115-116
Hughes AL
Comparative genomics - Genomes of mice and men
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136248179 2003 HUMAN MOLECULAR GENETICS 12(24):3325-3330
Sunyaev S; Kondrashov FA; Bork P; Ramensky V
Impact of selection, mutation rate and genetic drift on human genetic variation
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13729187 2003 JOURNAL OF APPLIED PHYSIOLOGY 95(4):1335-1337
Bogue M
Mouse Phenome Project: understanding human biology through mouse genetics and genomics
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138281194 2003 JOURNAL OF COMPUTATIONAL BIOLOGY 10(3-4):453-482
Durand D; Sankoff D
Tests for gene clustering
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139263199 2003 JOURNAL OF MOLECULAR BIOLOGY 333(1):1-20
Giuliodori S; Percudani R; Braglia P; Ferrari R; Guffanti E; Ottonello S; Dieci G
A composite upstream sequence motif potentiates tRNA gene transcription in yeast
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140219209 2003 MAMMALIAN GENOME 14(10):673-678
Thomas JW; Green ED
Comparative sequence analysis of a single-gene conserved segment in mouse and human
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141236219 2003 MOLECULAR AND CELLULAR BIOLOGY 23(24):9189-9207
Horie K; Yusa K; Yae K; Odajima J; Fischer SEJ; Keng VW; Hayakawa T; Mizuno S; Kondoh G; Ijiri T; Matsuda Y; Plasterk RHA; Takeda J
Characterization of Sleeping Beauty transposition and its application to genetic screening in mice
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142249233 2003 NATURE 424(6945):157-U2
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The DNA sequence of human chromosome 7
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Comparative genomics - Two worms are better than one
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The master mammal
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Mouse genome - The mighty mouse
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Human and mouse proteases: A comparative genomic approach
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The human Y chromosome: An evolutionary marker comes of age
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Mastering seeds for genomic size nucleotide BLAST searches
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