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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by first author.
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#LCRNCRNodes / Authors / DateLCSGCS
401210237 2003 NATURE BIOTECHNOLOGY 21(1):31-32
Sands AT
The master mammal
00
402131390 2004 GENOME RESEARCH 14(2):267-272
Sandstedt SA; Tucker PK
Evolutionary strata on the mouse X chromosome correspond to strata on the human X chromosome
00
403139225 2003 MOLECULAR GENETICS AND GENOMICS 270(2):173-180
Sarkar A; Sim C; Hong YS; Hogan JR; Fraser MJ; Robertson HM; Collins FH
Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences
00
4041104246 2003 NATURE REVIEWS GENETICS 4(4):285-295
Satoh N
The ascidian tadpole larva: Comparative molecular development and genomics
213
40511525 2003 BIOCHEMICAL SOCIETY TRANSACTIONS 31():437-443
Schadt EE; Monks SA; Friend SH
A new paradigm for drug discovery: integrating clinical, genetic, genomic and molecular phenotype data to identify drug targets
09
406140518 2004 OPTOMETRY AND VISION SCIENCE 81(2):99-110
Schaeffel F; Burkhardt E; Howland HC; Williams RW
Measurement of refractive state and deprivation myopia in two strains of mice
11
407462493 2004 NATURE REVIEWS GENETICS 5(1):43-51
Schaffner SF
The X chromosome in population genetics
00
408231305 2003 SCIENCE 300(5620):767-772
Scherer SW; Cheung J; MacDonald JR; Osborne LR; Nakabayashi K; Herbrick JA; Carson AR; Parker-Katiraee L; Skaug J; Khaja R; Zhang JJ; Hudek AK; Li M; Haddad M; Duggan GE; Fernandez BA; Kanematsu E; Gentles S; Christopoulos CC; Choufani S; Kwasnicka D; Zheng XQH; Lai ZW; Nusskern D; Zhang Q; Gu ZP; Lu F; Zeesman S; Nowaczyk MJ; Teshima I; Chitayat D; Shuman C; Weksberg R; Zackai EH; Grebe TA; Cox SR; Kirkpatrick SJ; Rahman N; Friedman JM; Heng HHQ; Pelicci PG; Lo-Coco F; Belloni E; Shaffer LG; Pober B; Morton CC; Gusella JF; Bruns GAP; Korf BR; Quade BJ; Ligon AH; Ferguson H; Higgins AW; Leach NT; Herrick SR; Lemyre E; Farra CG; Kim HG; Summers AM; Gripp KW; Roberts W; Szatmari P; Winsor EJT; Grzeschik KH; Teebi A; Minassian BA; Kere J; Armengol L; Pujana MA; Estivill X; Wilson MD; Koop BF; Tosi S; Moore GE; Boright AP; Zlotorynski E; Kerem B; Kroisel PM; Petek E; Oscier DG; Mould SJ; Dohner H; Dohner K; Rommens JM; Vincent JB; Venter JC; Li PW; Mural RJ; Adams MD; Tsui LC
Human chromosome 7: DNA sequence and biology
712
409174477 2004 MOLECULAR BIOLOGY OF THE CELL 15(3):1031-1043
Schlecht U; Demougin P; Koch R; Hermida L; Wiederkehr C; Descombes P; Pineau C; Jegou B; Primig M
Expression profiling of mammalian male meiosis and gametogenesis identifies novel candidate genes for roles in the regulation of fertility
01
410116374 2004 GENE EXPRESSION PATTERNS 4(1):105-110
Schmidtmer J; Engelkamp D
Isolation and expression pattern of three mouse homologues of chick Rgm
01
#LCRNCRNodes / Authors / DateLCSGCS
411259549 2004 VISION RESEARCH 44(16):1857-1867
Schmucker C; Schaeffel F
A paraxial schematic eye model for the growing C57BL/6 mouse
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412139186 2003 JOURNAL OF APPLIED PHYSIOLOGY 95(1):11-19
Schneider H; Patil SP; Canisius S; Gladmon EA; Schwartz AR; O'Donnell CP; Smith PL; Tankersley CG
Hypercapnic duty cycle is an intermediate physiological phenotype linked to mouse chromosome 5
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413143444 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279(10):9497-9503
Schoch GA; Yano JK; Wester MR; Griffin KJ; Stout CD; Johnson EF
Structure of human microsomal cytochrome P4502C8 - Evidence for a peripheral fatty acid binding site
01
414174275 2003 PHYSIOLOGICAL GENOMICS 16(1):90-98
Schwartz F; Duka A; Triantafyllidi E; Johns C; Duka I; Cui J; Gavras H
Serial analysis of gene expression in mouse kidney following angiotensin II administration
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415545257 2003 NUCLEIC ACIDS RESEARCH 31(13):3518-3524
Schwartz S; Elnitski L; Li M; Weirauch M; Riemer C; Smit A; Program NCS; Green ED; Hardison RC; Miller W
MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences
714
416116124 2003 GENOME RESEARCH 13(1):103-107
Schwartz S; Kent WJ; Smit A; Zhang Z; Baertsch R; Hardison RC; Haussler D; Miller W
Human-mouse alignments with BLASTZ
3860
417131217 2003 MOLECULAR AND CELLULAR BIOLOGY 23(11):3982-3989
Schwenk F; Zevnik B; Bruning J; Rohl M; Willuweit A; Rode A; Hennek T; Kauselmann G; Jaenisch R; Kuhn R
Hybrid embryonic stem cell-derived tetraploid mice show apparently normal morphological, physiological, and neurological characteristics
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418114424 2004 GENOME RESEARCH 14(5):963-970
Searle SMJ; Gilbert J; Iyer V; Clamp M
The Otter annotation system
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41918537 2004 SCIENTIST 18(12):28-29
Secko D
Computing gene regulation
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420151174 2003 HUMAN MOLECULAR GENETICS 12(11):1301-1312
Semenova E; Wang XF; Jablonski MM; Levorse J; Tilghman SM
An engineered 800 kilobase deletion of Uchl3 and Lmo7 on mouse chromosome 14 causes defects in viability, postnatal growth and degeneration of muscle and retina
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#LCRNCRNodes / Authors / DateLCSGCS
421419545 2004 TRENDS IN GENETICS 20(5):229-232
Semon M; Duret L
Evidence that functional transcription units cover at least half of the human genome
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422135451 2004 JOURNAL OF INFECTIOUS DISEASES 189(7):1245-1256
Sexton AC; Good RT; Hansen DS; D'Ombrain MC; Buckingham L; Simpson K; Schofield L
Transcriptional profiling reveals suppressed erythropoiesis, up-regulated glycolysis, and interferon-associated responses in murine malaria
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423360516 2004 NUCLEIC ACIDS RESEARCH 32(5):1774-1782
Shabalina SA; Ogurtsov AY; Rogozin IB; Koonin EV; Lipman DJ
Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals
00
424373386 2004 GENOME BIOLOGY 5(4):-
Shabalina SA; Spiridonov NA
The mammalian transcriptome and the function of non-coding DNA sequences
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425921337 2004 BIOINFORMATICS 20(5):636-U122
Shah N; Couronne O; Pennacchio LA; Brudno M; Batzoglou S; Bethel EW; Rubin EM; Hamann B; Dubchak I
Phylo-VISTA: interactive visualization of multiple DNA sequence alignments
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426138458 2004 JOURNAL OF PINEAL RESEARCH 36(3):165-170
Sharman EH; Sharman KG; Ge YW; Lahiri DK; Bondy SC
Age-related changes in murine CNS mRNA gene expression are modulated by dietary melatonin
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427141281 2003 PLOS BIOLOGY 1(3):410-419
Sharov AA; Piao YL; Matoba R; Dudekula DB; Qian Y; Vanburen V; Falco G; Martin PR; Stagg CA; Bassey UC; Wang YX; Carter MG; Hamatani T; Aiba K; Akutsu H; Sharova L; Tanaka TS; Kimber WL; Yoshikawa T; Jaradat SA; Pantano S; Nagaraja R; Boheler KR; Taub D; Hodes RJ; Longo DL; Schlessinger D; Keller J; Klotz E; Kelsoe G; Umezawa A; Vescovi AL; Rossant J; Kunath T; Hogan BLM; Curci A; D'Urso M; Kelso J; Hide W; Ko MSH
Transcriptome analysis of mouse stem cells and early embryos
01
428148334 2004 ANALYTICAL CHEMISTRY 76(3):672-683
Sharp JS; Becker JM; Hettich RL
Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry
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429162460 2004 JOURNAL OF VIROLOGY 78(2):899-911
Shen CH; Steiner LA
Genome structure and thymic expression of an endogenous retrovirus in zebrafish
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430326221 2003 MOLECULAR BIOLOGY AND EVOLUTION 20(8):1299-1309
Shih ACC; Li WH
GS-aligner: A novel tool for aligning genomic sequences using bit-level operations
01
#LCRNCRNodes / Authors / DateLCSGCS
43113593 2003 GENE 310():17-28
Shimizu H; Taniguchi H; Hippo Y; Hayashizaki Y; Aburatani H; Ishikawa T
Characterization of the mouse Abcc12 gene and its transcript encoding an ATP-binding cassette transporter, an orthologue of human ABCC12
01
432220298 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15776-15781
Shiraki T; Kondo S; Katayama S; Waki K; Kasukawa T; Kawaji H; Kodzius R; Watahiki A; Nakamura M; Arakawa T; Fukuda S; Sasaki D; Podhajska A; Harbers M; Kawai J; Carninci P; Hayashizaki Y
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
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433228491 2004 NATURE GENETICS 36(2):190-196
Shirane D; Sugao K; Namiki S; Tanabe M; Iino M; Hirose K
Enzymatic production of RNAi libraries from cDNAs
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434166473 2004 MOLECULAR BIOLOGY AND EVOLUTION 21(5):828-840
Shiu SH; Li WH
Origins, lineage-specific expansions, and multiple losses of tyrosine kinases in eukaryotes
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435477472 2004 MOLECULAR BIOLOGY AND EVOLUTION 21(3):468-488
Siepel A; Haussler D
Phylogenetic estimation of context-dependent substitution rates by maximum likelihood
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43616492 2003 FUNGAL GENETICS AND BIOLOGY 39(3):250-263
Silar P; Barreau C; Debuchy R; Kicka S; Turcq B; Sainsard-Chanet A; Sellem CH; Billault A; Cattolico L; Duprat S; Weissenbach J
Characterization of the genomic organization of the region bordering the centromere of chromosome V of Podospora anserina by direct sequencing
04
437148105 2003 GENETICAL RESEARCH 82(1):1-18
Silva JC; Shabalina SA; Harris DG; Spouge JL; Kondrashov AS
Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR-and L2-derived sequences within the mouse and human genomes
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438150232 2003 NATURE 423(6942):825-U2
Skaletsky H; Kuroda-Kawaguchi T; Minx PJ; Cordum HS; Hillier L; Brown LG; Repping S; Pyntikova T; Ali J; Bieri T; Chinwalla A; Delehaunty A; Delehaunty K; Du H; Fewell G; Fulton L; Fulton R; Graves T; Hou SF; Latrielle P; Leonard S; Mardis E; Maupin R; McPherson J; Miner T; Nash W; Nguyen C; Ozersky P; Pepin K; Rock S; Rohlfing T; Scott K; Schultz B; Strong C; Tin-Wollam A; Yang SP; Waterston RH; Wilson RK; Rozen S; Page DC
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes
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43918418 2003 BEHAVIOR GENETICS 33(5):563-574
Sluyter F; Arseneault L; Moffitt TE; Veenema AH; de Boer S; Koolhaas JM
Toward an animal model for antisocial behavior: parallels between mice and humans
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44011517 2003 BEHAVIOR GENETICS 33(5):457-460
Sluyter F; Schalkwyk LC
Introduction to the special issue - Aggression across species
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44112159 2003 CURRENT OPINION IN LIPIDOLOGY 14(5):499-504
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Quantitative trait locus mapping for atherosclerosis susceptibility
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442148432 2004 GENOMICS 83(4):577-587
Smolenski A; Schultess J; Danielewski O; Arguinzonis MIG; Thalheimer P; Kneitz S; Walter U; Lohmann SM
Quantitative analysis of the cardiac fibroblast transcriptome-implications for NO/cGMP signaling
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443123259 2003 NUCLEIC ACIDS RESEARCH 31(13):3540-3545
Solovyev VV; Shahmuradov IA
PromH: promoters identification using orthologous genomic sequences
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444226145 2003 GENOME RESEARCH 13(7):1631-1637
Sorek R; Ast G
Intronic sequences flanking alternatively spliced exons are conserved between human and mouse
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445456478 2004 MOLECULAR CELL 14(2):221-231
Sorek R; Lev-Maor G; Reznik M; Dagan T; Belinky F; Graur D; Ast G
Minimal conditions for exonization of intronic sequences: 5 ' splice site formation in Alu exons
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446155156 2003 GENOME RESEARCH 13(12):2609-2620
Sousa-Nunes R; Rana AA; Kettleborough R; Brickman JM; Clements M; Forrest A; Grimmond S; Avner P; Smith JC; Dunwoodie SL
Characterizing embryonic gene expression patterns in the mouse using nonredundant sequence-based selection
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447778529 2004 PROTEOMICS 4(6):1712-1726
Southan C
Has the yo-yo stopped? - An assessment of human protein-coding gene number
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448138276 2003 PHYSIOLOGICAL GENOMICS 16(1):119-130
Squire TL; Andrews MT
Pancreatic triacylglycerol lipase in a hibernating mammal. I. Novel genomic organization
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449128224 2003 MOLECULAR GENETICS AND GENOMICS 269(5):715-722
Srinivasan J; Sinz W; Jesse T; Wiggers-Perebolte L; Jansen K; Buntjer J; van der Meulen M; Sommer RJ
An integrated physical and genetic map of the nematode Pristionchus pacificus
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4503118280 2003 PLOS BIOLOGY 1(2):166-+
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The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics
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4513102495 2004 NATURE REVIEWS GENETICS 5(3):190-201
Steinmetz LM; Davis RW
Maximizing the potential of functional genomics
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452160319 2003 TRENDS IN GENETICS 19(9):505-513
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Molecular basis of inherited diseases: a structural perspective
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Storchova R; Gregorova S; Buckiova D; Kyselova V; Divina P; Forejt J
Genetic analysis of X-linked hybrid sterility in the house mouse
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454355128 2003 GENOME RESEARCH 13(5):838-844
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Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes
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4551347180 2003 HUMAN REPRODUCTION UPDATE 9(6):557-582
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Chemically defined media and the culture of mammalian preimplantation embryos: historical perspective and current issues
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Java-based application framework for visualization of gene regulatory region annotations
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Sundstrom H; Webster MT; Ellegren H
Reduced variation on the chicken Z chromosome
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458248179 2003 HUMAN MOLECULAR GENETICS 12(24):3325-3330
Sunyaev S; Kondrashov FA; Bork P; Ramensky V
Impact of selection, mutation rate and genetic drift on human genetic variation
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The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer
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Differential profiles of genes expressed in neonatal brain of 129X1/SvJ and C57BL/6J mice: A database to aid in analyzing DNA microarrays using nonisogenic gene-targeted mice
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461129167 2003 HERALD OF THE RUSSIAN ACADEMY OF SCIENCES 73(3):262-269
Sverdlov ED
DNA in a cell: From a molecular icon to the problem of "what is life?"
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462153358 2004 DEVELOPMENTAL BIOLOGY 269(1):276-285
Svoboda P; Stein P; Anger M; Bernstein E; Hannon GJ; Schultz RM
RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos
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Adaptive evolution of genes and gene families
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FRAGS: estimation of coding sequence substitution rates from fragmentary data
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Musculoskeletal diseases: from complex genetics to therapy - Editorial overview
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466217421 2004 GENOME RESEARCH 14(5):829-834
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A global view of the selection forces in the evolution of yeast cis-regulation
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Chemoprevention of colorectal cancer - Experimental approach and clinical applications
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The TPTE gene family: cellular expression, subcellular localization and alternative splicing
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The COG database: an updated version includes eukaryotes
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470341402 2004 GENOME RESEARCH 14(4):555-566
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47116310 2003 AMERICAN JOURNAL OF PSYCHIATRY 160(4):646-656
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The genes and brains of mice and men
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Mouse genetic approaches to feeding regulation: Serotonin 5-HT2C receptor mutant mice
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474219209 2003 MAMMALIAN GENOME 14(10):673-678
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Comparative sequence analysis of a single-gene conserved segment in mouse and human
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476144151 2003 GENOME RESEARCH 13(9):2129-2141
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478111204 2003 LIVER TRANSPLANTATION 9(8):789-795
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A genome-wide survey of human pseudogenes
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EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human
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Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
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The oligodendrocyte-myelin glycoprotein gene is highly expressed during the late stages of myelination in the rat central nervous system
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Protein kinase involved in lung injury susceptibility: Evidence from enzyme isoform genetic knockout and in vivo inhibitor treatment
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Cloning, expression, and characterization of three new mouse cytochrome P450 enzymes and partial characterization of their fatty acid oxidation activities
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Organization and evolution of the Cyp2 gene cluster on mouse chromosome 7, and comparison with the syntenic human cluster
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Vertebrate gene predictions and the problem of large genes
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Fine mapping and identification of candidate pulmonary adenoma susceptibility 1 genes using advanced intercross lines
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