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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by first author.
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#LCRNCRNodes / Authors / DateLCSGCS
3011367153 2003 GENOME RESEARCH 13(12):2507-2518
Margulies EH; Blanchette M; Haussler D; Green ED
Identification and characterization of multi-species conserved sequences
79
302231355 2004 DEVELOPMENT GENES AND EVOLUTION 214(2):64-71
Marikawa Y; Fujita TC; Alarcon VB
An enhancer-trap LacZ transgene reveals a distinct expression pattern of Kinesin family 26B in mouse embryos
00
303239354 2004 CURRENT OPINION IN PLANT BIOLOGY 7(2):102-107
Martienssen RA; Rabinowicz PD; O'Shaughnessy A; McCombie WR
Sequencing the maize genome
00
304131366 2004 EXPERIMENTAL GERONTOLOGY 39(6):913-916
Martin GM
New opportunities for genetic approaches to aging research using Roy Walford's favorite animal
00
305119159 2003 GENOME RESEARCH 13(12):2686-2690
Mata J; Bahler J
Correlations between gene expression and gene conservation in fission yeast
00
306127262 2003 NUCLEIC ACIDS RESEARCH 31(15):4490-4496
Matsuyama T; Kimura MT; Koike K; Abe T; Nakano T; Asami T; Ebisuzaki T; Held WA; Yoshida S; Nagase H
Global methylation screening in the Arabidopsis thaliana and Mus musculus genome: applications of virtual image restriction landmark genomic scanning (Vi-RLGS)
00
307210428 2003 BIOESSAYS 25(10):930-939
Mattick JS
Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms
17
308128215 2003 MEDICAL JOURNAL OF AUSTRALIA 179(4):212-216
Mattick JS
The human genome and the future of medicine
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309880499 2004 NATURE REVIEWS GENETICS 5(4):316-323
Mattick JS
RNA regulation: a new genetics?
01
310214520 2004 PHARMACOGENOMICS JOURNAL 4(1):5-8
Mattingly CJ; Colby GT; Rosenstein MC; Forrest JN; Boyer JL
Promoting comparative molecular studies in environmental health research: an overview of the comparative toxicogenomics database (CTD)
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#LCRNCRNodes / Authors / DateLCSGCS
311256457 2004 JOURNAL OF PHYSIOLOGY-LONDON 554(1):56-63
McBride MW; Charchar FJ; Graham D; Miller WH; Strahorn P; Carr FJ; Dominiczak AF
Functional genomics in rodent models of hypertension
11
312116384 2004 GENOME BIOLOGY 5(3):-
McCarthy EM; McDonald JF
Long terminal repeat retrotransposons of Mus musculus
00
31316416 2003 BASIC RESEARCH IN CARDIOLOGY 98(4):219-227
McDonald TG; Van Eyk JE
Mitochondrial proteomics - Undercover in the lipid bilayer
01
31412646 2003 CROATIAN MEDICAL JOURNAL 44(3):327-331
Menotti-Raymond M; David V; Wachter L; Yuhki N; O'Brien SJ
Quantitative polymerase chain reaction-based assay for estimating DNA yield extracted from domestic cat specimens
01
3151106450 2004 JOURNAL OF IMMUNOLOGY 172(5):2731-2738
Mestas J; Hughes CCW
Of mice and not men: Differences between mouse and human immunology
02
316347474 2004 MOLECULAR BIOLOGY AND EVOLUTION 21(6):984-990
Meunier J; Duret L
Recombination drives the evolution of GC-content in the human genome
00
317328514 2004 NUCLEIC ACIDS RESEARCH 32(2):776-783
Meyer IM; Durbin R
Gene structure conservation aids similarity based gene prediction
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318118150 2003 GENOME RESEARCH 13(9):2118-2128
Mi HY; Vandergriff J; Campbell M; Narechania A; Majoros W; Lewis S; Thomas PD; Ashburner M
Assessment of genome-wide protein function classification for Drosophila melanogaster
01
319137136 2003 GENOME RESEARCH 13(6B):1455-1465
Miki H; Setou M; Hirokawa N
Kinesin superfamily proteins (KIFs) in the mouse transcriptome
03
320148192 2003 JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES 792(1):33-48
Minamino N; Tanaka J; Kuwahara H; Kihara T; Satomi Y; Matsubae M; Takao T
Determination of endogenous peptides in the porcine brain: possible construction of Peptidome, a fact database for endogenous peptides
01
#LCRNCRNodes / Authors / DateLCSGCS
321238470 2004 MOLECULAR BIOLOGY 38(1):70-77
Mironov AA; Gelfand MS
Prediction and computer analysis of the exon-intron structure of human genes
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3222127502 2004 NATURE REVIEWS GENETICS 5(5):355-365
Mittal V
Improving the efficiency of RNA interference in mammals
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323116547 2004 TRENDS IN PARASITOLOGY 20(2):49-52
Mongin E; Louis C; Holt RA; Birney E; Collins FH
The Anopheles gambiae genome: an update
12
324131286 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(7):3883-3888
Moore JB; Blanchard RK; Cousins RJ
Dietary zinc modulates gene expression in murine thymus: Results from a comprehensive differential display screening
07
325144267 2003 NUCLEIC ACIDS RESEARCH 31(24):7271-7279
Moore JE; Lake JA
Gene structure prediction in syntenic DNA segments
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32615514 2003 ANTIVIRAL RESEARCH 59(3):181-191
Moreau JM; Dyer KD; Bonville CA; Nitto T; Vasquez NL; Easton AJ; Domachowske JB; Rosenberg HF
Diminished expression of an antiviral ribonuclease in response to pneumovirus infection in vivo
01
327151149 2003 GENOME RESEARCH 13(9):2069-2081
Mortlock DP; Guenther C; Kingsley DM
A general approach for identifying distant regulatory elements applied to the Gdf6 gene
00
32815571 2003 DEVELOPMENTAL BIOLOGY 258(2):432-442
Moss EG; Tang LJ
Conservation of the heterochronic regulator Lin-28, its developmental expression and microRNA complementary sites
015
3291100248 2003 NATURE REVIEWS GENETICS 4(4):315-322
Muller M; Kersten S
Nutrigenomics: goals and strategies
123
330121122 2003 GENOME RESEARCH 13(1):81-90
Mullikin JC; Ning ZM
The phusion assembler
49
#LCRNCRNodes / Authors / DateLCSGCS
331479380 2004 GENETICS 167(1):423-437
Nachman MW; D'Agostino SL; Tillquist CR; Mobasher Z; Hammer MF
Nucleotide variation at Msn and Alas2, two genes flanking the centromere of the X chromosome in humans
00
332224507 2004 NUCLEIC ACIDS RESEARCH 32():D471-D475
Nagashima T; Matsuda H; Silva DG; Petrovsky N; Konagaya A; Schonbach C
FREP: a database of functional repeats in mouse cDNAs
00
333135142 2003 GENOME RESEARCH 13(6B):1520-1533
Nagashima T; Silva DG; Petrovsky N; Socha LA; Suzuki H; Saito R; Kasukawa T; Kurochkin IV; Konagaya A; Schonbach C
Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS
12
334129240 2003 NATURE GENETICS 34(3):297-302
Nakai H; Montini E; Fuess S; Storm TA; Grompe M; Kay MA
AAV serotype 2 vectors preferentially integrate into active genes in mice
129
33511223 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 312(3):825-830
Nakayama M; Ohara O
A system using convertible vectors for screening soluble recombinant proteins produced in Escherichia coli from randomly fragmented cDNAs
00
336149428 2004 GENOMICS 83(1):106-118
Naumann F; Remus R; Schmitz B; Doerfler W
Gene structure and expression of the 5 '-(CGG)(n)-3 '-binding protein (CGGBP1)
00
337220316 2003 TRENDS IN GENETICS 19(6):306-310
Nekrutenko A; Chung WY; Li WH
An evolutionary approach reveals a high protein-coding capacity of the human genome
12
338352519 2004 PHARMACOGENETICS 14(1):1-18
Nelson DR; Zeldin DC; Hoffman SMG; Maltais LJ; Wain HM; Nebert DW
Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants
04
339136293 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12235-12240
Niimura Y; Nei M
Evolution of olfactory receptor genes in the human genome
03
340149201 2003 JOURNAL OF MOLECULAR EVOLUTION 57(3):325-334
Niu DK; Lin K; Zhang DY
Strand compositional asymmetries of nuclear DNA in eukaryotes
00
#LCRNCRNodes / Authors / DateLCSGCS
341537456 2004 JOURNAL OF PHYSIOLOGY-LONDON 554(1):31-39
Nobrega MA; Pennacchio LA
Comparative genomic analysis as a tool for biological discovery
15
34214085 2003 EPILEPSIA 44():16-21
Noebels JL
Exploring new gene discoveries in idiopathic generalized epilepsy
04
343148183 2003 IUBMB LIFE 55(4-5):235-241
Nogues G; Kadener S; Cramer P; de la Mata M; Fededa JP; Blaustein M; Srebrow A; Kornblihtt AR
Control of alternative pre-mRNA splicing by RNA pol II elongation: Faster is not always better
01
344176175 2003 HUMAN MOLECULAR GENETICS 12(11):1313-1320
Nurtdinov RN; Artamonova II; Mironov AA; Gelfand MS
Low conservation of alternative splicing patterns in the human and mouse genomes
312
345418307 2003 SCIENCE 301(5641):1854-1855
O'Brien SJ; Murphy WJ
A dog's breakfast?
01
346110239 2003 NATURE GENETICS 33(1):3-4
O'Brien T; Woychik R
Our small relative
00
347193129 2003 GENOME RESEARCH 13(6):1029-1041
O'Brien TP; Bult CJ; Cremer C; Grunze M; Knowles BB; Langowski J; McNally J; Pederson T; Politz JC; Pombo A; Schmahl G; Spatz JP; van Driel R
Genome function and nuclear architecture: From gene expression to nanoscience
04
34814334 2003 BMC GENOMICS 4():-
Oduru S; Campbell JL; Karri S; Hendry WJ; Khan SA; Williams SC
Gene discovery in the hamster: a comparative genomics approach for gene annotation by sequencing of hamster testis cDNAs
01
349230438 2004 GENOMICS 83(6):1063-1071
Ohtsuka M; Kikuchi N; Ozato K; Inoko H; Kimura M
Comparative analysis of a 229-kb medaka genomic region, containing the zic1 and zic4 genes, with Fugu, human, and mouse
00
35012477 2003 DNA RESEARCH 10(1):35-48
Okazaki N; Kikuno R; Ohara R; Inamoto S; Aizawa H; Yuasa S; Nakajima D; Nagase T; Ohara O; Koga H
Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries
34
#LCRNCRNodes / Authors / DateLCSGCS
35123679 2003 DNA RESEARCH 10(4):167-180
Okazaki N; Kikuno R; Ohara R; Inamoto S; Koseki H; Hiraoka S; Saga Y; Nagase T; Ohara O; Koga H
Prediction of the coding sequences of mouse homologues of KIAA gene: III. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries
12
35214131 2003 GENOME RESEARCH 13(6B):1267-1272
Okazaki Y; Hume DA
A guide to the mammalian genome - Commentary
11
3531137349 2004 CANADIAN JOURNAL OF ZOOLOGY-REVUE CANADIENNE DE ZOOLOGIE 82(2):375-390
Oliveira G; Rodrigues NB; Romanha AJ; Bahia D
Genome and genomics of schistosomes
01
354171302 2003 SCANDINAVIAN JOURNAL OF IMMUNOLOGY 58(2):155-164
Olofsson P; Holmdahl R
Positional cloning of Ncf1 - a piece in the puzzle of arthritis genetics
01
355120184 2003 JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY 112(6):1050-1056
Ono SJ; Nakamura T; Ohbayashi M; Dawson M; Ikeda Y; Nugent AK; Toda M; Jay G
Expression profiling: Opportunities and pitfalls and impact on the study and management of allergic diseases
00
356130371 2004 GENE 325():179-186
Osawa M; Horiuchi H; Tian W; Kaneko M
Divergent evolution of the prolactin-inducible protein gene and related genes in the mouse genome
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357150517 2004 NUCLEIC ACIDS RESEARCH 32(9):2912-2924
Osipovich AB; White-Grindley EK; Hicks GG; Roshon MJ; Shaffer C; Moore JH; Ruley HE
Activation of cryptic 3 ' splice sites within introns of cellular genes following gene entrapment
00
358123418 2004 GENOME RESEARCH 14(4):780-785
Osoegawa K; Zhu BL; Shu CL; Ren T; Cao Q; Vessere GM; Lutz MM; Jensen-Seaman MI; Zhao SY; de Jong PJ
BAC resources for the rat genome project
11
359642426 2004 GENOME RESEARCH 14(6):1191-1198
Ovcharenko I; Boffelli D; Loots GG
EShadow: A tool for comparing closely related sequences
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360134373 2004 GENE 333():135-141
Paces J; Zika R; Paces V; Pavlicek A; Clay O; Bernardi G
Representing GC variation along eukaryotic chromosomes
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361178106 2003 GENETICS 163(4):1227-1235
Paigen K
One hundred years of mouse genetics: An intellectual history. II. The molecular revolution (1981-2002) (Reprinted from The New Yorker, 2003)
23
362239525 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(8):2241-2246
Pan Y; Kislinger T; Gramolini AO; Zvaritch E; Kranias EG; MacLennan DH; Emili A
Identification of biochemical adaptations in hyper-or hypocontractile hearts from phospholamban mutant mice by expression proteomics
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363140125 2003 GENOME RESEARCH 13(1):108-117
Parra G; Agarwal P; Abril JF; Wiehe T; Fickett JW; Guigo R
Comparative gene prediction in human and mouse
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364148345 2004 BMC GENETICS 5():-
Peirce JL; Lu L; Gu J; Silver LM; Williams RW
A new set of BXD recombinant inbred lines from advanced intercross populations in mice
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36512575 2003 DIABETES 52(6):1551-1556
Penha-Goncalves C; Moule C; Smink LJ; Howson J; Gregory S; Rogers J; Lyons PA; Suttie JJ; Lord CJ; Peterson LB; Todd JA; Wicker LS
Identification of a structurally distinct CD101 molecule encoded in the 950-kb Idd10 region of NOD mice
00
366457206 2003 MAMMALIAN GENOME 14(7):429-436
Pennacchio LA
Insights from human/mouse genome comparisons
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367442193 2003 JOURNAL OF CLINICAL INVESTIGATION 111(8):1099-1106
Pennacchio LA; Rubin EM
Comparative genomic tools and databases: providing insights into the human genome
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3681135462 2004 LIFE SCIENCES 74(12):1445-1463
Pennefather JN; Lecci A; Candenas ML; Patak E; Pinto FM; Maggi CA
Tachykinins and tachykinin receptors: a growing family
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369144176 2003 HUMAN MOLECULAR GENETICS 12(17):2109-2120
Peters T; Thaete C; Wolf S; Popp A; Sedlmeier R; Grosse J; Nehls MC; Russ A; Schlueter V
A mouse model for cystinuria type I
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370142118 2003 GENOME RESEARCH 13(1):37-45
Pevzner P; Tesler G
Genome Rearrangements in mammalian evolution: Lessons from human and mouse genomes
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371140289 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(13):7672-7677
Pevzner P; Tesler G
Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution
59
372167435 2004 GENOMICS 83(5):790-801
Pimenta AF; Levitt P
Characterization of the genomic structure of the mouse limbic system-associated membrane protein (Lsamp) gene
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373132481 2004 MOLECULAR PHYLOGENETICS AND EVOLUTION 31(1):153-163
Plocik A; Layden J; Kesseli R
Comparative analysis of NBS domain sequences of NBS-LRR disease resistance genes from sunflower, lettuce, and chicory
00
374865343 2004 BMC BIOINFORMATICS 5():-
Pollard DA; Bergman CM; Stoye J; Celniker SE; Eisen MB
Benchmarking tools for the alignment of functional noncoding DNA
01
375137370 2004 GENE 325():145-155
Poloumienko A; Cote A; Ten Quee AT; Zhu L; Bakovic M
Genomic organization and differential splicing of the mouse and human Pcyt2 genes
00
376332395 2004 GENOME RESEARCH 14(3):463-471
Porcel BM; Delfour O; Castelli V; De Berardinis V; Friedlander L; Cruaud C; Ureta-Vidal A; Scarpelli C; Wincker P; Schachter V; Saurin W; Gyapay G; Salanoubat M; Weissenbach J
Numerous novel annotations of the human genome sequence supported by a 5 '-end-enriched cDNA collection
00
377156190 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(44):43178-43187
Prasannan P; Pike S; Peng K; Shane B; Appling DR
Human mitochondrial C-1-tetrahydrofolate synthase - Gene structure, tissue distribution of the mRNA, and immunolocalization in Chinese hamster ovary cells
01
3782143249 2003 NATURE REVIEWS GENETICS 4(7):544-558
Puente XS; Sanchez LM; Overall CM; Lopez-Otin C
Human and mouse proteases: A comparative genomic approach
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379150332 2004 AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY 286(3):F590-F596
Qi ZH; Whitt I; Mehta A; Jin JP; Zhao M; Harris RC; Fogo AB; Breyer MD
Serial determination of glomerular filtration rate in conscious mice using FITC-inulin clearance
00
380115970 2003 DEVELOPMENT OF AUDITORY AND VESTIBULAR SYSTEMS 3: MOLECULAR DEVELOPMENT OF THE INNER EAR 57():45-+
Quint E; Steel KP
Use of mouse genetics for studying inner ear development
00
#LCRNCRNodes / Authors / DateLCSGCS
381245427 2004 GENOMICS 83(1):76-84
Rahman L; Bliskovski V; Kaye FJ; Zajac-Kaye M
Evolutionary conservation of a 2-kb intronic sequence flanking a tissue-specific alternative exon in the PTBP2 gene
11
38219312 2003 TRANSGENIC RESEARCH 12(6):739-741
Rani PU; Khillan JS
A simple and convenient method for preparing chimeric animals from embryonic stem (ES) cells
00
383151205 2003 MAMMALIAN GENOME 14(5):302-313
Reed DR; Li X; McDaniel AH; Lu K; Li SR; Tordoff MG; Price RA; Bachmanov AA
Loci on Chromosomes 2, 4, 9, and 16 for body weight, body length, and adiposity identified in a genome scan of an F-2 intercross between the 129P3/J and C57BU6ByJ mouse strains
03
38416840 2003 CHRONOBIOLOGY INTERNATIONAL 20(3):417-440
Refinetti R
Effects of prolonged exposure to darkness on circadian photic responsiveness in the mouse
00
385156277 2003 PIGMENT CELL RESEARCH 16(6):685-692
Regales L; Giraldo P; Garcia-DIaz A; Lavado A; Montoliu L
Identification and functional validation of a 5 ' upstream regulatory sequence in the human tyrosinase gene homologous to the locus control region of the mouse tyrosinase gene
00
3861786 2003 EUROPEAN JOURNAL OF SURGICAL ONCOLOGY 29(7):624-627
Rew DA
Of digital mice and men
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387154101 2003 GENES & DEVELOPMENT 17(17):2094-2107
Reynolds PA; Smolen GA; Palmer RE; Sgroi D; Yajnik V; Gerald WL; Haber DA
Identification of a DNA-binding site and transcriptional target for the EWS-WT1(+KTS) oncoprotein
00
38816289 2003 FASEB JOURNAL 17(13):1849-1870
Rhen T; Grissom S; Afshari C; Cidlowski JA
Dexamethasone blocks the rapid biological effects of 17 beta-estradiol in the rat uterus without antagonizing its global genomic actions
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3891951 2002 JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA 7(3):327-345
Rijnkels M
Multispecies comparison of the casein gene loci and evolution of casein gene family
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390157163 2003 GENOMICS 82(4):417-432
Rijnkels M; Elnitski L; Miller W; Rosen JM
Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins
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39114388 2003 FASEB JOURNAL 17(12):-
Rogers MS; Rohan RM; Birsner AE; D'Amato RJ
Genetic loci that control vascular endothelial growth factor-induced angiogenesis
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392197253 2003 NATURE REVIEWS IMMUNOLOGY 3(3):243-252
Rogner UC; Avner P
Congenic mice: Cutting tools for complex immune disorders
16
39314521 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 309(4):709-717
Roskoski R
STI-571: an anticancer protein-tyrosine kinase inhibitor
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394319108 2003 GENOME BIOLOGY 4(4):-
Rossant J; Scherer SW
The mouse genome sequence - the end of the tail, or just the beginning?
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395367540 2004 TRENDS IN BIOTECHNOLOGY 22(1):23-30
Ruan YJ; Le Ber P; Ng HH; Liu ET
Interrogating the transcriptome
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3961255 2003 ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 59():1521-1524
Rupert PB; Xiao H; Ferre-D'Amare AR
U1A RNA-binding domain at 1.8 angstrom resolution
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39713520 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 302(1):23-28
Saada N; Dai B; Echetebu C; Sarna SK; Palade P
Smooth muscle uses another promoter to express primarily a form of human Ca(V)1.2 L-type calcium channel different from the principal heart form
02
39813019 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 301(3):633-640
Saito R; Suzuki H; Hayashizaki Y
Global insights into protein complexes through integrated analysis of the reliable interactome and knockout lethality
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399115365 2004 EXPERIMENTAL ANIMALS 53(2):151-154
Sakai T; Miura I; Yamada-Ishibashi S; Wakita Y; Kohara Y; Yamazaki Y; Inoue T; Kominami R; Moriwaki K; Shiroishi T; Yonekawa H; Kikkawa Y
Update of mouse microsatellite database of Japan (MMDBJ)
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400146188 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(33):30450-30457
Sakao E; Ishihara A; Horikawa K; Akiyama M; Arai M; Kato M; Seki N; Fukunaga K; Shimizu-Yabe A; Iwase K; Ohtsuka S; Sato T; Kohno Y; Shibata S; Takiguchi M
Two-peaked synchronization in day/night expression rhythms of the fibrinogen gene cluster in the mouse liver
00

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