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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by first author.
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#LCRNCRNodes / Authors / DateLCSGCS
201119261 2003 NUCLEIC ACIDS RESEARCH 31(13):3712-3715
Hennig S; Groth D; Lehrach H
Automated Gene Ontology annotation for anonymous sequence data
03
202131362 2004 EUROPEAN JOURNAL OF CELL BIOLOGY 83(1):19-26
Hesse M; Zimek A; Weber K; Magin TM
Comprehensive analysis of keratin gene clusters in humans and rodents
00
203134528 2004 PROTEINS-STRUCTURE FUNCTION AND GENETICS 54(3):583-595
Heuser P; Wohlfahrt G; Schomburg D
Efficient methods for filtering and ranking fragments for the prediction of structurally variable regions in proteins
00
204228513 2004 NUCLEIC ACIDS RESEARCH 32():D568-D571
Hill DP; Begley DA; Finger JH; Hayamizu TF; McCright IJ; Smith CM; Beal JS; Corbani LE; Blake JA; Eppig JT; Kadin JA; Richardson JE; Ringwald M
The mouse Gene Expression Database (GXD): updates and enhancements
02
205249233 2003 NATURE 424(6945):157-U2
Hillier LW; Fulton RS; Fulton LA; Graves TA; Pepin KH; Wagner-McPherson C; Layman D; Maas J; Jaeger S; Walker R; Wylie K; Sekhon M; Becker MC; O'Laughlin MD; Schaller ME; Fewell GA; Delehaunty KD; Miner TL; Nash WE; Cordes M; Du H; Sun H; Edwards J; Bradshaw-Cordum H; Ali J; Andrews S; Isak A; VanBrunt A; Nguyen C; Du FY; Lamar B; Courtney L; Kalicki J; Ozersky P; Bielicki L; Scott K; Holmes A; Harkins R; Harris A; Strong CM; Hou SF; Tomlinson C; Dauphin-Kohlberg S; Kozlowicz-Reilly A; Leonard S; Rohlfing T; Rock SM; Tin-Wollam AM; Abbott A; Minx P; Maupin R; Strowmatt C; Latreille P; Miller N; Johnson D; Murray J; Woessner JP; Wendl MC; Yang SP; Schultz BR; Wallis JW; Spieth J; Bieri TA; Nelson JO; Berkowicz N; Wohldmann PE; Cook LL; Hickenbotham MT; Eldred J; Williams D; Bedell JA; Mardis ER; Clifton SW; Chissoe SL; Marra MA; Raymond C; Haugen E; Gillett W; Zhou Y; James R; Phelps K; Iadanoto S; Bubb K; Simms E; Levy R; Clendenning J; Kaul R; Kent WJ; Furey TS; Baertsch RA; Brent MR; Keibler E; Flicek P; Bork P; Suyama M; Bailey JA; Portnoy ME; Torrents D; Chinwalla AT; Gish WR; Eddy SR; McPherson JD; Olson MV; Eichler EE; Green ED; Waterston RH; Wilson RK
The DNA sequence of human chromosome 7
1015
20613458 2003 CURRENT OPINION IN IMMUNOLOGY 15(3):239-245
Hoffmann R; Melchers F
A genomic view of lymphocyte development - Opinion
02
207157523 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(6):1748-1753
Hong HK; Chakravarti A; Takahashi JS
The gene for soluble N-ethylmaleimide sensitive factor attachment protein alpha is mutated in hydrocephaly with hop gait (hyh) mice
02
208236219 2003 MOLECULAR AND CELLULAR BIOLOGY 23(24):9189-9207
Horie K; Yusa K; Yae K; Odajima J; Fischer SEJ; Keng VW; Hayakawa T; Mizuno S; Kondoh G; Ijiri T; Matsuda Y; Plasterk RHA; Takeda J
Characterization of Sleeping Beauty transposition and its application to genetic screening in mice
23
20913197 2003 GENE 319():85-97
Howard KM; Muga SJ; Zhang LW; Thigpen AE; Appling DR
Characterization of the rat cytoplasmic C-1-tetrahydrofolate synthase gene and analysis of its expression in liver regeneration and fetal development
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2103113348 2004 CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE 26(1):19-30
Hsiang T; Baillie DL
Recent progress, developments, and issues in comparative fungal genomics
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211223152 2003 GENOME RESEARCH 13(9):2164-2170
Huang XQ; Wang JM; Aluru S; Yang SP; Hillier L
PCAP: A whole-genome assembly program
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21228168 2003 HEREDITY 90(2):115-116
Hughes AL
Comparative genomics - Genomes of mice and men
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213230297 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15754-15757
Hughes AL; Packer B; Welch R; Bergen AW; Chanock SJ; Yeager M
Widespread purifying selection at polymorphic sites in human protein-coding loci
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214123440 2004 HUMAN MUTATION 23(2):170-176
Ianzano L; Young EJ; Zhao XC; Chan EM; Rodriguez MT; Torrado MV; Scherer SW; Minassian BA
Loss of function of the cytoplasmic isoform of the protein laforin (EPM2A) causes lafora progressive myoclonus epilepsy
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215147242 2003 NATURE IMMUNOLOGY 4(8):801-807
Iizuka K; Naidenko OV; Plougastel BFM; Fremont DH; Yokoyama WM
Genetically linked C-type lectin-related ligands for the NKRP1 family of natural killer cell receptors
18
216128314 2003 TRENDS IN ENDOCRINOLOGY AND METABOLISM 14(3):100-102
Insel PA
Location, location, location
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2171269 2003 AMERICAN JOURNAL OF PSYCHIATRY 160(4):616-620
Insel TR; Collins FS
Psychiatry in the genomics era
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218129292 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12147-12152
Iourgenko V; Zhang WJ; Mickanin C; Daly I; Jiang C; Hexham JM; Orth AP; Miraglia L; Meltzer J; Garza D; Chirn GW; McWhinnie E; Cohen D; Skelton J; Terry R; Yu Y; Bodian D; Buxton FP; Zhu JA; Song CZ; Labow MA
Identification of a family of cAMP response element-binding protein coactivators by genome-scale functional analysis in mammalian cells
02
219631524 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(7):1916-1921
Istrail S; Sutton GG; Florea L; Halpern AL; Mobarry CM; Lippert R; Walenz B; Shatkay H; Dew I; Miller JR; Flanigan MJ; Edwards NJ; Bolanos R; Fasulo D; Halldorsson BV; Hannenhalli S; Turner R; Yooseph S; Lu F; Nusskern DR; Shue BC; Zheng XQH; Zhong F; Delcher AL; Huson DH; Kravitz SA; Mouchard L; Reinert K; Remington KA; Clark AG; Waterman MS; Eichler EE; Adams MD; Hunkapiller MW; Myers EW; Venter JC
Whole-genome shotgun assembly and comparison of human genome assemblies
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22024256 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):629-635
Jackson M
Duplicate, decouple, disperse: the evolutionary transience of human centromeric regions
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221570399 2004 GENOME RESEARCH 14(4):528-538
Jensen-Seaman MI; Furey TS; Payseur BA; Lu YT; Roskin KM; Chen CF; Thomas MA; Haussler D; Jacob HJ
Comparative recombination rates in the rat, mouse, and human genomes
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2222131250 2003 NATURE REVIEWS GENETICS 4(8):598-612
Jobling MA; Tyler-Smith C
The human Y chromosome: An evolutionary marker comes of age
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22316581 2003 DRUG METABOLISM AND DISPOSITION 31(12):1532-1540
Johnson EF
The 2002 Bernard B. Brodie Award Lecture - Deciphering substrate recognition by drug-metabolizing cytochromes P450
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2241112459 2004 JOURNAL OF PROTEOME RESEARCH 3(2):296-306
Johnson JR; Florens L; Carucci DJ; Yates JR
Proteomics in malaria
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22556309 2003 SCIENCE 302(5647):997-+
Johnston M; Stormo GD
Heirlooms in the attic
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226239448 2004 JOURNAL OF BONE AND MINERAL RESEARCH 19(4):600-606
Judex S; Garman R; Squire M; Donahue LR; Rubin C
Genetically based influences on the site-specific regulation of trabecular and cortical bone morphology
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227422410 2004 GENOME RESEARCH 14(4):672-678
Kalafus KJ; Jackson AR; Milosavljevic A
Pash: Efficient genome-scale sequence anchoring by positional hashing
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228174213 2003 MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING 41(3):271-282
Kallos MS; Sen A; Behie LA
Large-scale expansion of mammalian neural stem cells: a review
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229117429 2004 GENOMICS 83(2):225-230
Karim SA; Johnson KJ; Griffiths IR; Vouyiouklis DA
A physical map of the genomic region on mouse chromosome 3 containing the hindshaker (hsh) mutation
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23015163 2003 CURRENT OPINION IN STRUCTURAL BIOLOGY 13(3):344-352
Karlin S; Mrazek J; Gentles AJ
Genome comparisons and analysis
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23159509 2004 NUCLEIC ACIDS RESEARCH 32():D493-D496
Karolchik D; Hinrichs AS; Furey TS; Roskin KM; Sugnet CW; Haussler D; Kent WJ
The UCSC Table Browser data retrieval tool
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232124181 2003 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 11(5):579-583
Katoh M; Katoh M
Recombination cluster around FGFR2-WDR11-HTPAPL locus on human chromosome 10q26
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233149363 2004 EUROPEAN JOURNAL OF HUMAN GENETICS 12(2):139-149
Kaufmann D; Kenner O; Nurnberg P; Vogel W; Bartelt B
InNF1, CFTR, PER3, CARS and SYT7, alternatively included exons show higher conservation of surrounding intron sequences than constitutive exons
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234114139 2003 GENOME RESEARCH 13(6B):1488-1495
Kawai J; Hayashizaki Y
DNA book
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235262137 2003 GENOME RESEARCH 13(6B):1466-1477
Kawasawa Y; McKenzie LM; Hill DP; Bono H; Yanagisawa M
G protein-coupled receptor genes in the FANTOM2 database
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236584535 2004 SCIENCE 303(5664):1626-1632
Kazazian HH
Mobile elements: Drivers of genome evolution
03
2372733 2003 BMC BIOINFORMATICS 4():-
Keibler E; Brent MR
Eval: A software package for analysis of genome annotations
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238236295 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(23):13402-13406
Keightley PD; Gaffney DJ
Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents
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239426393 2004 GENOME RESEARCH 14(3):442-450
Keightley PD; Johnson T
MCALIGN: Stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution
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240150230 2003 NATURE 423(6937):241-254
Kellis M; Patterson N; Endrizzi M; Birren B; Lander ES
Sequencing and comparison of yeast species to identify genes and regulatory elements
26113
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241321344 2004 BMC EVOLUTIONARY BIOLOGY 4():-
Kendal WS
A scale invariant clustering of genes on human chromosome 7
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242428291 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(20):11484-11489
Kent WJ; Baertsch R; Hinrichs A; Miller W; Haussler D
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
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243133146 2003 GENOME RESEARCH 13(7):1765-1774
Khambata-Ford S; Liu YY; Gleason C; Dickson M; Altman RB; Batzoglou S; Myers RM
Identification of promoter regions in the human genome by using a retroviral plasmid library-based functional reporter gene assay
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244315510 2004 NUCLEIC ACIDS RESEARCH 32():D502-D504
Kikuno R; Nagase T; Nakayama M; Koga H; Okazaki N; Nakajima D; Ohara O
HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE
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245130235 2003 NATURE 425(6953):81-86
Kile BT; Hentges KE; Clark AT; Nakamura H; Salinger AP; Liu B; Box N; Stockton DW; Johnson RL; Behringer RR; Bradley A; Justice MJ
Functional genetic analysis of mouse chromosome 11
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246136455 2004 JOURNAL OF NEUROCHEMISTRY 89(5):1271-1282
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Delayed genomic responses to transient middle cerebral artery occlusion in the rat
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247144469 2004 MOLECULAR AND CELLULAR BIOLOGY 24(13):5923-5936
Kim JW; Zeller KI; Wang Y; Jegga AG; Aronow BJ; O'Donnell KA; Dang CV
Evaluation of MYC E-box phylogenetic footprints in glycolytic genes by chromatin immunoprecipitation assays
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248129308 2003 SCIENCE 301(5641):1898-1903
Kirkness EF; Bafna V; Halpern AL; Levy S; Remington K; Rusch DB; Delcher AL; Pop M; Wang W; Fraser CM; Venter JC
The dog genome: Survey sequencing and comparative analysis
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24926460 2003 CURRENT OPINION IN MOLECULAR THERAPEUTICS 5(3):285-293
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Going global: Protein expression profiling using shotgun mass spectrometry
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250152216 2003 MOLECULAR & CELLULAR PROTEOMICS 2(2):96-106
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PRISM, a generic large scale proteomic investigation strategy for mammals
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251148220 2003 MOLECULAR BIOLOGY AND EVOLUTION 20(8):1281-1289
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Antisense transcripts with FANTOM2 clone set and their implications for gene regulation
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Genetic aspects of susceptibility to air pollution
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254163356 2004 DEVELOPMENTAL BIOLOGY 265(2):462-477
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Conserved elements in Pax6 intron 7 involved in (auto)regulation and alternative transcription
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Molecular control of the oocyte to embryo transition
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Embryogenomics of pre-implantation mammalian development: current status
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257325413 2004 GENOME RESEARCH 14(4):700-707
Kolbe D; Taylor J; Elnitski L; Eswara P; Li J; Miller W; Hardison R; Chiaromonte F
Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat
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2592133382 2004 GENOME BIOLOGY 5(2):-
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260169170 2003 HORMONE RESEARCH 60():103-112
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History and future of growth hormone research
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261225542 2004 TRENDS IN GENETICS 20(1):1-4
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Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorihic liver gene expression
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26313622 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 311(4):884-890
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Genome-wide analysis of DNA methylation status of CpG islands in embryoid bodies, teratomas, and fetuses
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DNA methylation and Rett syndrome
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Krzywinski M; Wallis J; Gosele C; Bosdet I; Chiu R; Graves T; Hummel O; Layman D; Mathewson C; Wye N; Zhu B; Albracht D; Asano J; Barber S; Brown-John M; Chan S; Chand S; Cloutier A; Davito J; Fjell C; Gaige T; Ganten D; Girn N; Guggenheimer K; Himmelbauer H; Kreitler T; Leach S; Lee D; Lehrach H; Mayo M; Mead K; Olson T; Pandoh P; Prabhu AL; Shin H; Tanzer S; Thompson J; Tsai M; Walker J; Yang G; Sekhon M; Hillier L; Zimdahl H; Marziali A; Osoegawa K; Zhao S; Siddiqui A; de Jong PJ; Warren W; Mardis E; McPherson JD; Wilson R; Hubner N; Jones S; Marra M; Schein J
Integrated and sequence-ordered BAC and YAC-based physical maps for the rat genome
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Kumar RA; Chan KL; Wong AHW; Little KQ; Rajcan-Separovic E; Abrahams BS; Simpson EM
Unexpected embryonic stem (ES) cell mutations represent a concern in gene targeting: Lessons from "Fierce" mice
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Kurowski MA; Bhagwat AS; Papaj G; Bujnicki JM
Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB
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271131203 2003 JOURNAL OF VIROLOGY 77(13):7459-7466
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Functional analysis of the endogenous retroviral promoter of the human endothelin B receptor gene
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272262321 2003 TRENDS IN GENETICS 19(11):640-648
Landry JR; Mager DL; Wilhelm BT
Complex controls: the role of alternative promoters in mammalian genomes
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273346406 2004 GENOME RESEARCH 14(4):603-608
Lane RP; Young J; Newman T; Trask BJ
Species specificity in rodent pheromone receptor repertoires
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Lang D; Brown CB; Milewski R; Jiang YQ; Lu MM; Epstein JA
Distinct enhancers regulate neural expression of Pax7
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A cattle-human comparative map built with cattle BAC-ends and human genome sequence
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Lastowska M; Chung YJ; Ching NC; Haber M; Norris MD; Kees UR; Pearson ADJ; Jackson MS
Regions syntenic to human 17q are gained in mouse and rat neuroblastoma
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The mouse salivary androgen-binding protein (ABP) gene cluster on chromosomes 7: characterization and evolutionary relationships
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Four BPI (bactericidal/permeability-increasing protein)-like genes expressed in the mouse nasal, oral, airway and digestive epithelia
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Four reasons to consider a novel class of innate immune molecules in the oral epithelium
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Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster
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Striking differences between the mouse and the human alpha-fetoprotein enhancers
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A co-opted gypsy-type LTR-retrotransposon is conserved in the genomes of humans, sheep, mice, and rats
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The human olfactory receptor gene family
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From subgenome analysis to protein structure
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298132482 2004 MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS 546(1-2):29-38
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Effects of oxidative and alkylating damage on microsatellite instability in nontumorigenic human cells
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29913449 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(1):14-19
Mao JH; Balmain A
Genomic approaches to identification of tumour-susceptibility genes using mouse models
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Marais G
Biased gene conversion: implications for genome and sex evolution
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