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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y. Okazaki et al. NATURE 420 (6915): 563-573 DEC 5 2002 and the citing papers. |
Nodes: 159
Authors: 1113,
Journals: 70,
Outer References: 5312
Collection span: 2002 - 2004
View: Overview. Sorted by date.
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| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
|---|---|---|---|---|---|
| 101 | 1 | 41 | 93 2003 DEC [15] PLOS BIOLOGY 1(3):410-419
Sharov AA; Piao YL; Matoba R; Dudekula DB; Qian Y; Vanburen V; Falco G; Martin PR; Stagg CA; Bassey UC; Wang YX; Carter MG; Hamatani T; Aiba K; Akutsu H; Sharova L; Tanaka TS; Kimber WL; Yoshikawa T; Jaradat SA; Pantano S; Nagaraja R; Boheler KR; Taub D; Hodes RJ; Longo DL; Schlessinger D; Keller J; Klotz E; Kelsoe G; Umezawa A; Vescovi AL; Rossant J; Kunath T; Hogan BLM; Curci A; D'Urso M; Kelso J; Hide W; Ko MSH Transcriptome analysis of mouse stem cells and early embryos | 0 | 1 |
| 102 | 1 | 74 | 92 2003 DEC 16 PHYSIOLOGICAL GENOMICS 16(1):90-98
Schwartz F; Duka A; Triantafyllidi E; Johns C; Duka I; Cui J; Gavras H Serial analysis of gene expression in mouse kidney following angiotensin II administration | 0 | 0 |
| 103 | 3 | 20 | 100 2003 DEC 23 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15776-15781
Shiraki T; Kondo S; Katayama S; Waki K; Kasukawa T; Kawaji H; Kodzius R; Watahiki A; Nakamura M; Arakawa T; Fukuda S; Sasaki D; Podhajska A; Harbers M; Kawai J; Carninci P; Hayashizaki Y Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage | 1 | 2 |
| 104 | 1 | 10 | 144 2004 JAN 1 NUCLEIC ACIDS RESEARCH 32():D78-D81
Suzuki Y; Yamashita R; Sugano S; Nakai K DBTSS, DataBase of Transcriptional Start Sites: progress report 2004 | 0 | 1 |
| 105 | 1 | 13 | 145 2004 JAN 1 NUCLEIC ACIDS RESEARCH 32():D258-D261
Harris MA; Clark J; Ireland A; Lomax J; Ashburner M; Foulger R; Eilbeck K; Lewis S; Marshall B; Mungall C; Richter J; Rubin GM; Blake JA; Bult C; Dolan M; Drabkin H; Eppig JT; Hill DP; Ni L; Ringwald M; Balakrishnan R; Cherry JM; Christie KR; Costanzo MC; Dwight SS; Engel S; Fisk DG; Hirschman JE; Hong EL; Nash RS; Sethuraman A; Theesfeld CL; Botstein D; Dolinski K; Feierbach B; Berardini T; Mundodi S; Rhee SY; Apweiler R; Barrell D; Camon E; Dimmer E; Lee V; Chisholm R; Gaudet P; Kibbe W; Kishore R; Schwarz EM; Sternberg P; Gwinn M; Hannick L; Wortman J; Berriman M; Wood V; de la Cruz N; Tonellato P; Jaiswal P; Seigfried T; White R The Gene Ontology (GO) database and informatics resource | 0 | 6 |
| 106 | 1 | 20 | 146 2004 JAN 1 NUCLEIC ACIDS RESEARCH 32():D383-D387
Yazaki J; Kojima K; Suzuki K; Kishimoto N; Kikuchi S The Rice PIPELINE: a unification tool for plant functional genomics | 0 | 1 |
| 107 | 3 | 24 | 147 2004 JAN 1 NUCLEIC ACIDS RESEARCH 32():D471-D475
Nagashima T; Matsuda H; Silva DG; Petrovsky N; Konagaya A; Schonbach C FREP: a database of functional repeats in mouse cDNAs | 0 | 0 |
| 108 | 3 | 9 | 148 2004 JAN 1 NUCLEIC ACIDS RESEARCH 32():D476-D481
Bult CJ; Blake JA; Richardson JE; Kadin JA; Eppig JT The Mouse Genome Database (MGD): integrating biology with the genome | 0 | 2 |
| 109 | 4 | 16 | 149 2004 JAN 1 NUCLEIC ACIDS RESEARCH 32():D548-D551
Nikaido I; Saito C; Wakamoto A; Tomaru Y; Arakawa T; Hayashizaki Y; Okazaki Y EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes | 0 | 0 |
| 110 | 1 | 15 | 150 2004 JAN 1 NUCLEIC ACIDS RESEARCH 32():D552-D556
Visel A; Thaller C; Eichele G GenePaint.org: an atlas of gene expression patterns in the mouse embryo | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 111 | 2 | 28 | 151 2004 JAN 1 NUCLEIC ACIDS RESEARCH 32():D568-D571
Hill DP; Begley DA; Finger JH; Hayamizu TF; McCright IJ; Smith CM; Beal JS; Corbani LE; Blake JA; Eppig JT; Kadin JA; Richardson JE; Ringwald M The mouse Gene Expression Database (GXD): updates and enhancements | 0 | 2 |
| 112 | 1 | 40 | 122 2004 JAN [15] GENOME RESEARCH 14(1):79-89
Zhang T; Haws P; Wu Q Multiple variable first exons: A mechanism for cell-and tissue-specific gene regulation | 0 | 0 |
| 113 | 1 | 29 | 140 2004 JAN [15] NATURE GENETICS 36(1):40-45
Ota T; Suzuki Y; Nishikawa T; Otsuki T; Sugiyama T; Irie R; Wakamatsu A; Hayashi K; Sato H; Nagai K; Kimura K; Makita H; Sekine M; Obayashi M; Nishi T; Shibahara T; Tanaka T; Ishii S; Yamamoto J; Saito K; Kawai Y; Isono Y; Nakamura Y; Nagahari K; Murakami K; Yasuda T; Iwayanagi T; Wagatsuma M; Shiratori A; Sudo H; Hosoiri T; Kaku Y; Kodaira H; Kondo H; Sugawara M; Takahashi M; Kanda K; Yokoi T; Furuya T; Kikkawa E; Omura Y; Abe K; Kamihara K; Katsuta N; Sato K; Tanikawa M; Yamazaki M; Ninomiya K; Ishibashi T; Yamashita H; Murakawa K; Fujimori K; Tanai H; Kimata M; Watanabe M; Hiraoka S; Chiba Y; Ishida S; Ono Y; Takiguchi S; Watanabe S; Yosida M; Hotuta T; Kusano J; Kanehori K; Takahashi-Fujii A; Hara H; Tanase T; Nomura Y; Togiya S; Komai F; Hara R; Takeuchi K; Arita M; Imose N; Musashino K; Yuuki H; Oshima A; Sasaki N; Aotsuka S; Yoshikawa Y; Matsunawa H; Ichihara T; Shiohata N; Sano S; Moriya S; Momiyama H; Satoh N; Takami S; Terashima Y; Suzuki O; Nakagawa S; Senoh A; Mizoguchi H; Goto Y; Shimizu F; Wakebe H; Hishigaki H; Watanabe T; Sugiyama A; Takemoto M; Kawakami B; Yamazaki M; Watanabe K; Kumagai A; Itakura S; Fukuzumi Y; Fujimori Y; Komiyama M; Tashiro H; Tanigami A; Fujiwara T; Ono T; Yamada K; Fujii Y; Ozaki K; Hirao M; Ohmori Y; Kawabata A; Hikiji T; Kobatake N; Inagaki H; Ikema Y; Okamoto S; Okitani R; Kawakami T; Noguchi S; Itoh T; Shigeta K; Senba T; Matsumura K; Nakajima Y; Mizuno T; Morinaga M; Sasaki M; Togashi T; Oyama M; Hata H; Watanabe M; Komatsu T; Mizushima-Sugano J; Satoh T; Shirai Y; Takahashi Y; Nakagawa K; Okumura K; Nagase T; Nomura N; Kikuchi H; Masuho Y; Yamashita R; Nakai K; Yada T; Nakamura Y; Ohara O; Isogai T; Sugano S Complete sequencing and characterization of 21,243 full-length human cDNAs | 1 | 2 |
| 114 | 1 | 67 | 158 2004 JAN [15] TRENDS IN BIOTECHNOLOGY 22(1):23-30
Ruan YJ; Le Ber P; Ng HH; Liu ET Interrogating the transcriptome | 0 | 1 |
| 115 | 2 | 74 | 117 2004 JAN 21 GENE 325():63-78
Retta SF; Avolio M; Francalanci F; Procida S; Balzac F; Degani S; Tarone G; Silengo L Identification of Krit1B: a novel alternative splicing isoform of cerebral cavernous malformation gene-1 | 0 | 0 |
| 116 | 1 | 21 | 130 2004 JAN 31 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37(1):75-82
Yu U; Lee SH; Kim YJ; Kim S Bioinformatics in the post-genome era | 0 | 0 |
| 117 | 4 | 196 | 131 2004 JAN 31 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37(1):93-106
Castrillo JO; Oliver SG Yeast as a touchstone in post-genomic research: Strategies for integrative analysis in functional genomics | 0 | 0 |
| 118 | 1 | 109 | 138 2004 FEB 1 MOLECULAR PHARMACOLOGY 65(2):267-278
Zoraghi R; Corbin JD; Francis SH Properties and functions of GAF domains in cyclic nucleotide phosphodiesterases and other proteins | 0 | 0 |
| 119 | 2 | 53 | 133 2004 FEB 5 JOURNAL OF NEUROBIOLOGY 58(2):201-206
Setou M; Hayasaka T; Yao I Axonal transport versus dendritic transport | 0 | 0 |
| 120 | 4 | 24 | 116 2004 FEB 13 FEBS LETTERS 559(1-3):22-26
Kodzius R; Matsumura Y; Kasukawa T; Shimokawa K; Fukuda S; Shiraki T; Nakamura M; Arakawa T; Sasaki D; Kawai J; Harbers M; Carninci P; Hayashizaki Y Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 121 | 1 | 57 | 113 2004 FEB [15] CELL RESEARCH 14(1):1-7
Hennig W The revolution of the biology of the genome | 0 | 0 |
| 122 | 3 | 44 | 114 2004 FEB [15] CURRENT OPINION IN CHEMICAL BIOLOGY 8(1):20-25
Rual JF; Hill DE; Vidal M ORFeome projects: gateway between genomics and omics | 0 | 0 |
| 123 | 1 | 36 | 115 2004 FEB [15] DEVELOPMENTAL DYNAMICS 229(2):373-379
Hou J; Yashiro K; Okazaki Y; Saijoh Y; Hayashizaki Y; Hamada H Identification of a novel left-right asymmetrically expressed gene in the mouse belonging to the BPI/PLUNC superfamily | 0 | 0 |
| 124 | 3 | 25 | 123 2004 FEB [15] GENOME RESEARCH 14(2):280-286
Veeramachaneni V; Makalowski W; Galdzicki M; Sood R; Makalowska I Mammalian overlapping genes: The comparative perspective | 0 | 0 |
| 125 | 1 | 29 | 154 2004 FEB [15] PROTEIN SCIENCE 13(2):545-548
Kasai T; Inoue M; Koshiba S; Yabuki T; Aoki M; Nunokawa E; Seki E; Matsuda T; Matsuda N; Tomo Y; Shirouzu M; Terada T; Obayashi N; Hamana H; Shinya N; Tatsuguchi A; Yasuda S; Yoshida M; Hirota H; Matsuo Y; Tani K; Suzuki H; Arakawa T; Carninci P; Kawai J; Hayashizaki Y; Kigawa T; Yokoyama S Solution structure of a BolA-like protein from Mus musculus | 0 | 0 |
| 126 | 3 | 42 | 157 2004 FEB [15] TRENDS IN BIOCHEMICAL SCIENCES 29(2):88-94
Lavorgna G; Dahary D; Lehner B; Sorek R; Sanderson CM; Casari G In search of antisense | 0 | 0 |
| 127 | 1 | 30 | 105 2004 FEB 20 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 314(4):1086-1092
Nakane T; Satoh T; Inada Y; Nakayama J; Itoh F; Chiba S Molecular cloning and expression of HRLRRP, a novel heart-restricted leucine-rich repeat protein | 0 | 0 |
| 128 | 1 | 49 | 112 2004 FEB 20 CELL 116(4):499-509
Cawley S; Bekiranov S; Ng HH; Kapranov P; Sekinger EA; Kampa D; Piccolboni A; Sementchenko V; Cheng J; Williams AJ; Wheeler R; Wong B; Drenkow J; Yamanaka M; Patel S; Brubaker S; Tammana H; Helt G; Struhl K; Gingeras TR Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs | 1 | 7 |
| 129 | 2 | 34 | 124 2004 MAR [15] GENOME RESEARCH 14(3):331-342
Kampa D; Cheng J; Kapranov P; Yamanaka M; Brubaker S; Cawley S; Drenkow J; Piccolboni A; Bekiranov S; Helt G; Tammana H; Gingeras TR Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 | 1 | 2 |
| 130 | 2 | 32 | 125 2004 MAR [15] GENOME RESEARCH 14(3):463-471
Porcel BM; Delfour O; Castelli V; De Berardinis V; Friedlander L; Cruaud C; Ureta-Vidal A; Scarpelli C; Wincker P; Schachter V; Saurin W; Gyapay G; Salanoubat M; Weissenbach J Numerous novel annotations of the human genome sequence supported by a 5 '-end-enriched cDNA collection | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 131 | 2 | 66 | 129 2004 MAR [15] INTERNAL MEDICINE JOURNAL 34(3):79-90
Kiyosawa H; Kawashima T; Silva D; Petrovsky N; Hasegawa Y; Sakai K; Hayashizaki Y Systematic genome-wide approach to positional candidate cloning for identification of novel human disease genes | 0 | 0 |
| 132 | 4 | 25 | 141 2004 MAR [15] NATURE REVIEWS GENETICS 5(3):223-228
Hayashizaki Y; Kawai J Innovation - A new approach to the distribution and storage of genetic resources | 0 | 0 |
| 133 | 1 | 24 | 106 2004 APR 2 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 316(2):437-445
Sugino H; Yanase H; Hamada S; Kurokawa K; Asakawa S; Shimizu N; Yagi T Distinct genomic sequence of the CNR/Pcdh alpha genes in chicken | 0 | 0 |
| 134 | 1 | 47 | 108 2004 APR 15 BIOCHEMICAL JOURNAL 379():385-393
Kuhn M; Ng CKD; Su YH; Kilic A; Mitko D; Bien-Ly N; Komuves LG; Yang RB Identification of an orphan guanylate cyclase receptor selectively expressed in mouse testis | 0 | 0 |
| 135 | 2 | 24 | 110 2004 APR [15] BIOTECHNIQUES 36(4):690-+
Wu JQ; Garcia AM; Hulyk S; Sneed A; Kowis C; Yuan Y; Steffen D; McPherson JD; Gunaratne PH; Gibbs RA Large-scale RT-PCR recovery of full-length cDNA clones | 0 | 0 |
| 136 | 1 | 184 | 136 2004 APR 15 MOLECULAR AND CELLULAR ENDOCRINOLOGY 218(1-2):7-20
Mindnich R; Moller G; Adamski J The role of 17 beta-hydroxy steroid dehydrogenases | 0 | 0 |
| 137 | 1 | 98 | 142 2004 APR [15] NATURE REVIEWS GENETICS 5(4):276-287
Wasserman WW; Sandelin A Applied bioinformatics for the identification of regulatory elements | 0 | 1 |
| 138 | 8 | 80 | 143 2004 APR [15] NATURE REVIEWS GENETICS 5(4):316-323
Mattick JS RNA regulation: a new genetics? | 0 | 1 |
| 139 | 6 | 39 | 159 2004 APR [15] TRENDS IN BIOTECHNOLOGY 22(4):161-167
Hayashizaki Y; Kanamori M Dynamic transcriptome of mice | 0 | 0 |
| 140 | 2 | 36 | 152 2004 APR 20 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(16):6062-6067
Su AI; Wiltshire T; Batalov S; Lapp H; Ching KA; Block D; Zhang J; Soden R; Hayakawa M; Kreiman G; Cooke MP; Walker JR; Hogenesch JB A gene atlas of the mouse and human protein-encoding transcriptomes | 0 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 141 | 1 | 20 | 118 2004 APR 28 GENE 331():115-123
Zhou GJ; Wang J; Zhang Y; Zhong CM; Ni J; Wang L; Guo JH; Zhang KX; Yu L; Zhao SY Cloning, expression and subeellular localization of HN1 and HN1L genes, as well as characterization of their orthologs, defining an evolutionarily conserved gene family | 0 | 0 |
| 142 | 4 | 21 | 111 2004 APR 29 BMC GENOMICS 5():-
Silva DG; Schonbach C; Brusic V; Socha LA; Nagashima T; Petrovsky N Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system | 0 | 0 |
| 143 | 1 | 38 | 107 2004 MAY 14 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 317(4):1052-1060
Vierstraete E; Verleyen P; Sas F; Van den Bergh G; De Loof A; Arckens L; Schoofs L The instantly released Drosophila immune proteome is infection-specific | 0 | 0 |
| 144 | 2 | 32 | 104 2004 MAY 15 ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 425(2):221-232
Lo PK; Wang FF 5 '-Heterogeneity of mouse Dda3 transcripts is attributed to differential initiation of transcription and alternative splicing | 0 | 0 |
| 145 | 1 | 28 | 126 2004 MAY [15] GENOME RESEARCH 14(5):942-950
Curwen V; Eyras E; Andrews TD; Clarke L; Mongin E; Searle SMJ; Clamp M The Ensembl automatic gene annotation system | 0 | 0 |
| 146 | 1 | 32 | 134 2004 MAY [15] MOLECULAR AND CELLULAR BIOLOGY 24(9):3794-3803
Schlamp CL; Thliveris AT; Li Y; Kohl LP; Knop C; Dietz JA; Larsen IV; Imesch P; Pinto LH; Nickells RW Insertion of the beta Geo promoter trap into the Fem1c gene of ROSA3 mice | 0 | 0 |
| 147 | 1 | 50 | 139 2004 MAY 20 NATURE 429(6989):268-274
Han JS; Szak ST; Boeke JD Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes | 0 | 2 |
| 148 | 1 | 25 | 109 2004 MAY 22 BIOINFORMATICS 20(8):1285-1291
Gan HH; Fera D; Zorn J; Shiffeldrim N; Tang M; Laserson U; Kim N; Schlick T RAG: RNA-As-Graphs database - concepts, analysis, and features | 0 | 0 |
| 149 | 2 | 18 | 153 2004 JUN 1 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(22):8366-8371
Abramowitz J; Grenet D; Birnbaumer M; Torres HN; Birnbaumer L XL alpha s, the extra-long form of the alpha-subunit of the Gs G protein, is significantly longer than suspected, and so is its companion Alex | 0 | 0 |
| 150 | 1 | 33 | 137 2004 JUN 4 MOLECULAR CELL 14(5):647-656
Callen BP; Shearwin KE; Egan JB Transcriptional interference between convergent promoters caused by elongation over the promoter | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 151 | 3 | 87 | 127 2004 JUN [15] GENOMICS 83(6):1012-1023
Beisel KW; Shiraki T; Morris KA; Pompeia C; Kachar B; Arakawa T; Bono H; Kawai J; Hayashizaki Y; Carninci P Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library | 0 | 0 |
| 152 | 1 | 69 | 128 2004 JUN [15] IMMUNITY 20(6):669-679
Vinuesa CG; Goodnow CC Illuminating autoimmune regulators through controlled variation of the mouse genome sequence | 0 | 0 |
| 153 | 1 | 57 | 135 2004 JUN [15] MOLECULAR AND CELLULAR BIOLOGY 24(12):5620-5634
Nishant KT; Ravishankar H; Rao MRS Characterization of a mouse recombination hot spot locus encoding a novel non-protein-coding RNA | 0 | 0 |
| 154 | 4 | 78 | 155 2004 JUN [15] PROTEOMICS 4(6):1712-1726
Southan C Has the yo-yo stopped? - An assessment of human protein-coding gene number | 0 | 0 |
| 155 | 1 | 38 | 119 2004 [JUN 30] GENOME BIOLOGY 5(1):-
Hurowitz EH; Brown PO Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae | 0 | 0 |
| 156 | 5 | 52 | 120 2004 [JUN 30] GENOME BIOLOGY 5(1):-
Osato N; Yamada H; Satoh K; Ooka H; Yamamoto M; Suzuki K; Kawai J; Carninci P; Ohtomo Y; Murakami K; Matsubara K; Kikuchi S; Hayashizaki Y Antisense transcripts with rice full-length cDNAs | 0 | 0 |
| 157 | 2 | 73 | 121 2004 [JUN 30] GENOME BIOLOGY 5(4):-
Shabalina SA; Spiridonov NA The mammalian transcriptome and the function of non-coding DNA sequences | 0 | 0 |
| 158 | 1 | 184 | 132 2004 [JUN 30] JOURNAL OF BIOMEDICAL SCIENCE 11(3):278-294
Zheng ZM Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression | 0 | 0 |
| 159 | 2 | 58 | 156 2004 [JUN 30] REPRODUCTION FERTILITY AND DEVELOPMENT 16(1-2):79-85
Ko MSH Embryogenomics of pre-implantation mammalian development: current status | 0 | 0 |
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