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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y. Okazaki et al. NATURE 420 (6915): 563-573 DEC 5 2002 and the citing papers. |
Nodes: 159
Authors: 1113,
Journals: 70,
Outer References: 5312
Collection span: 2002 - 2004
View: Overview. Sorted by GCS.
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| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
|---|---|---|---|---|---|
| 1 | 0 | 52 | 2 2002 NATURE 420(6915):563-573
Okazaki Y; Furuno M; Kasukawa T; Adachi J; Bono H; Kondo S; Nikaido I; Osato N; Saito R; Suzuki H; Yamanaka I; Kiyosawa H; Yagi K; Tomaru Y; Hasegawa Y; Nogami A; Schonbach C; Gojobori T; Baldarelli R; Hill DP; Bult C; Hume DA; Quackenbush J; Schriml LM; Kanapin A; Matsuda H; Batalov S; Beisel KW; Blake JA; Bradt D; Brusic V; Chothia C; Corbani LE; Cousins S; Dalla E; Dragani TA; Fletcher CF; Forrest A; Frazer KS; Gaasterland T; Gariboldi M; Gissi C; Godzik A; Gough J; Grimmond S; Gustincich S; Hirokawa N; Jackson IJ; Jarvis ED; Kanai A; Kawaji H; Kawasawa Y; Kedzierski RM; King BL; Konagaya A; Kurochkin IV; Lee Y; Lenhard B; Lyons PA; Maglott DR; Maltais L; Marchionni L; McKenzie L; Miki H; Nagashima T; Numata K; Okido T; Pavan WJ; Pertea G; Pesole G; Petrovsky N; Pillai R; Pontius JU; Qi D; Ramachandran S; Ravasi T; Reed JC; Reed DJ; Reid J; Ring BZ; Ringwald M; Sandelin A; Schneider C; Semple CAM; Setou M; Shimada K; Sultana R; Takenaka Y; Taylor MS; Teasdale RD; Tomita M; Verardo R; Wagner L; Wahlestedt C; Wang Y; Watanabe Y; Wells C; Wilming LG; Wynshaw-Boris A; Yanagisawa M; Yang I; Yang L; Yuan Z; Zavolan M; Zhu Y; Zimmer A; Carninci P; Hayatsu N; Hirozane-Kishikawa T; Konno H; Nakamura M; Sakazume N; Sato K; Shiraki T; Waki K; Kawai J; Aizawa K; Arakawa T; Fukuda S; Hara A; Hashizume W; Imotani K; Ishii Y; Itoh M; Kagawa I; Miyazaki A; Sakai K; Sasaki D; Shibata K; Shinagawa A; Yasunishi A; Yoshino M; Waterston R; Lander ES; Rogers J; Birney E; Hayashizaki Y Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs | 160 | 158 |
| 2 | 1 | 27 | 79 2003 NATURE 423(6941):762-769
Yamauchi T; Kamon J; Ito Y; Tsuchida A; Yokomizo T; Kita S; Sugiyama T; Miyagishi M; Hara K; Tsunoda M; Murakami K; Ohteki T; Uchida S; Takekawa S; Waki H; Tsuno NH; Shibata Y; Terauchi Y; Froguel P; Tobe K; Koyasu S; Taira K; Kitamura T; Shimizu T; Nagai R; Kadowaki T Cloning of adiponectin receptors that mediate antidiabetic metabolic effects | 0 | 72 |
| 3 | 1 | 72 | 27 2003 GENES & DEVELOPMENT 17(8):991-1008
Lim LP; Lau NC; Weinstein EG; Abdelhakim A; Yekta S; Rhoades MW; Burge CB; Bartel DP The microRNAs of Caenorhabditis elegans | 0 | 51 |
| 4 | 1 | 30 | 83 2003 NATURE GENETICS 34(1):35-41
Reboul J; Vaglio P; Rual JF; Lamesch P; Martinez M; Armstrong CM; Li SM; Jacotot L; Bertin N; Janky R; Moore T; Hudson JR; Hartley JL; Brasch MA; Vandenhaute J; Boulton S; Endress GA; Jenna S; Chevet E; Papasotiropoulos V; Tolias PP; Ptacek J; Snyder M; Huang R; Chance MR; Lee HM; Doucette-Stamm L; Hill DE; Vidal M C-elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression | 3 | 35 |
| 5 | 1 | 39 | 95 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(3):1140-1145
Guigo R; Dermitzakis ET; Agarwal P; Ponting CP; Parra G; Reymond A; Abril JF; Keibler E; Lyle R; Ucla C; Antonarakis SE; Brent MR Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes | 7 | 17 |
| 6 | 2 | 41 | 102 2003 SCIENCE 302(5646):842-846
Yamada K; Lim J; Dale JM; Chen HM; Shinn P; Palm CJ; Southwick AM; Wu HC; Kim C; Nguyen M; Pham P; Cheuk R; Karlin-Newmann G; Liu SX; Lam B; Sakano H; Wu T; Yu GX; Miranda M; Quach HL; Tripp M; Chang CH; Lee JM; Toriumi M; Chan MMH; Tang CC; Onodera CS; Deng JM; Akiyama K; Ansari Y; Arakawa T; Banh J; Banno F; Bowser L; Brooks S; Carninci P; Chao QM; Choy N; Enju A; Goldsmith AD; Gurjal M; Hansen NF; Hayashizaki Y; Johnson-Hopson C; Hsuan VW; Iida K; Karnes M; Khan S; Koesema E; Ishida J; Jiang PX; Jones T; Kawai J; Kamiya A; Meyers C; Nakajima M; Narusaka M; Seki M; Sakurai T; Satou M; Tamse R; Vaysberg M; Wallender EK; Wong C; Yamamura Y; Yuan SL; Shinozaki K; Davis RW; Theologis A; Ecker JR Empirical analysis of transcriptional activity in the Arabidopsis genome | 3 | 17 |
| 7 | 1 | 30 | 80 2003 NATURE 425(6953):81-86
Kile BT; Hentges KE; Clark AT; Nakamura H; Salinger AP; Liu B; Box N; Stockton DW; Johnson RL; Behringer RR; Bradley A; Justice MJ Functional genetic analysis of mouse chromosome 11 | 0 | 14 |
| 8 | 1 | 113 | 38 2003 GENOME RESEARCH 13(6B):1324-1334
Kiyosawa H; Yamanaka I; Osato N; Kondo S; Hayashizaki Y Antisense transcripts with FANTOM2 clone set and their implications for gene regulation | 6 | 13 |
| 9 | 1 | 76 | 69 2003 HUMAN MOLECULAR GENETICS 12(11):1313-1320
Nurtdinov RN; Artamonova II; Mironov AA; Gelfand MS Low conservation of alternative splicing patterns in the human and mouse genomes | 1 | 12 |
| 10 | 1 | 64 | 33 2003 GENOME RESEARCH 13(6B):1273-1289
Carninci P; Waki K; Shiraki T; Konno H; Shibata K; Itoh M; Aizawa K; Arakawa T; Ishii Y; Sasaki D; Bono H; Kondo S; Sugahara Y; Saito R; Osato N; Fukuda S; Sato K; Watahiki A; Hirozane-Kishikawa T; Nakamura M; Shibata Y; Yasunishi A; Kikuchi N; Yoshiki A; Kusakabe M; Gustincich S; Beisel K; Pavan W; Aidinis V; Nakagawara A; Held WA; Iwata H; Kono T; Nakauchi H; Lyons P; Wells C; Hume DA; Fagiolini M; Hensch TK; Brinkmeier M; Camper S; Hirota J; Mombaerts P; Muramatsu M; Okazaki Y; Kawai J; Hayashizaki Y Targeting a complex transcriptome: The construction of the mouse full-length cDNA encyclopedia | 6 | 11 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 11 | 1 | 52 | 78 2003 MOLECULAR & CELLULAR PROTEOMICS 2(2):96-106
Kislinger T; Rahman K; Radulovic D; Cox B; Rossant J; Emili A PRISM, a generic large scale proteomic investigation strategy for mammals | 0 | 11 |
| 12 | 1 | 56 | 17 2003 CURRENT OPINION IN CELL BIOLOGY 15(3):281-289
Andersen AA; Panning B Epigenetic gene regulation by noncoding RNAs | 1 | 10 |
| 13 | 1 | 35 | 99 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12201-12206
Schultz N; Hamra FK; Garbers DL A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets | 0 | 10 |
| 14 | 1 | 51 | 34 2003 GENOME RESEARCH 13(6B):1290-1300
Zavolan M; Kondo S; Schonbach C; Adachi J; Hume DA; Hayashizaki Y; Gaasterland T Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome | 3 | 9 |
| 15 | 1 | 104 | 10 2003 BIOESSAYS 25(10):930-939
Mattick JS Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms | 2 | 7 |
| 16 | 1 | 43 | 35 2003 GENOME RESEARCH 13(6B):1301-1306
Numata K; Kanai A; Saito R; Kondo S; Adachi J; Wilming LG; Hume DA; Hayashizaki Y; Tomita M Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection | 3 | 7 |
| 17 | 1 | 26 | 64 2003 GENOME RESEARCH 13(7):1631-1637
Sorek R; Ast G Intronic sequences flanking alternatively spliced exons are conserved between human and mouse | 0 | 7 |
| 18 | 1 | 49 | 112 2004 CELL 116(4):499-509
Cawley S; Bekiranov S; Ng HH; Kapranov P; Sekinger EA; Kampa D; Piccolboni A; Sementchenko V; Cheng J; Williams AJ; Wheeler R; Wong B; Drenkow J; Yamanaka M; Patel S; Brubaker S; Tammana H; Helt G; Struhl K; Gingeras TR Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs | 1 | 7 |
| 19 | 1 | 18 | 57 2003 GENOME RESEARCH 13(6B):1505-1519
Baldarelli RM; Hill DP; Blake JA; Adachi J; Furuno M; Bradt D; Corbani LE; Cousins S; Frazer KS; Qi D; Yang LL; Ramachandran S; Reed D; Zhu YX; Kasukawa T; Ringwald M; King BL; Maltais LJ; McKenzie LM; Schriml LM; Maglott D; Church DM; Pruitt K; Eppig JT; Richardson JE; Kadin JA; Bult CJ Connecting sequence and biology in the laboratory mouse | 3 | 6 |
| 20 | 1 | 20 | 60 2003 GENOME RESEARCH 13(6B):1542-1551
Kasukawa T; Furuno M; Nikaido I; Bono H; Hume DA; Bult C; Hill DP; Baldarelli R; Gough J; Kanapin A; Matsuda H; Schriml LM; Hayashizaki Y; Okazaki Y; Quackenbush J Development and evaluation of an automated annotation pipeline and cDNA annotation system | 3 | 6 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 21 | 1 | 97 | 86 2003 NATURE REVIEWS IMMUNOLOGY 3(3):243-252
Rogner UC; Avner P Congenic mice: Cutting tools for complex immune disorders | 0 | 6 |
| 22 | 1 | 13 | 145 2004 NUCLEIC ACIDS RESEARCH 32():D258-D261
Harris MA; Clark J; Ireland A; Lomax J; Ashburner M; Foulger R; Eilbeck K; Lewis S; Marshall B; Mungall C; Richter J; Rubin GM; Blake JA; Bult C; Dolan M; Drabkin H; Eppig JT; Hill DP; Ni L; Ringwald M; Balakrishnan R; Cherry JM; Christie KR; Costanzo MC; Dwight SS; Engel S; Fisk DG; Hirschman JE; Hong EL; Nash RS; Sethuraman A; Theesfeld CL; Botstein D; Dolinski K; Feierbach B; Berardini T; Mundodi S; Rhee SY; Apweiler R; Barrell D; Camon E; Dimmer E; Lee V; Chisholm R; Gaudet P; Kibbe W; Kishore R; Schwarz EM; Sternberg P; Gwinn M; Hannick L; Wortman J; Berriman M; Wood V; de la Cruz N; Tonellato P; Jaiswal P; Seigfried T; White R The Gene Ontology (GO) database and informatics resource | 0 | 6 |
| 23 | 1 | 46 | 20 2003 DEVELOPMENT GENES AND EVOLUTION 213(5-6):222-234
Wada S; Tokuoka M; Shoguchi E; Kobayashi K; Di Gregorio A; Spagnuolo A; Branno M; Kohara Y; Rokhsar D; Levine M; Saiga H; Satoh N; Satou Y A genomewide survey of developmentally relevant genes in Ciona intestinalis - II. Genes for homeobox transcription factors | 0 | 5 |
| 24 | 1 | 16 | 37 2003 GENOME RESEARCH 13(6B):1318-1323
Bono H; Yagi K; Kasukawa T; Nikaido I; Tominaga N; Miki R; Mizuno Y; Tomaru Y; Goto H; Nitanda H; Shimizu D; Makino H; Morita T; Fujiyama J; Sakai T; Shimoji T; Hume DA; Hayashizaki Y; Okazaki Y Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays | 4 | 5 |
| 25 | 1 | 30 | 39 2003 GENOME RESEARCH 13(6B):1335-1344
Kanapin A; Batalov S; Davis MJ; Gough J; Grimmond S; Kawaji H; Magrane M; Matsuda H; Schonbach C; Teasdale RD; Yuan Z Mouse proteome analysis | 1 | 5 |
| 26 | 1 | 38 | 49 2003 GENOME RESEARCH 13(6B):1430-1442
Ravasi T; Huber T; Zavolan M; Forrest A; Gaasterland T; Grimmond S; Hume DA Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome | 0 | 4 |
| 27 | 1 | 78 | 28 2003 GENETICS 163(4):1227-1235
Paigen K One hundred years of mouse genetics: An intellectual history. II. The molecular revolution (1981-2002) (Reprinted from The New Yorker, 2003) | 0 | 3 |
| 28 | 1 | 16 | 40 2003 GENOME RESEARCH 13(6B):1345-1349
Bono H; Nikaido I; Kasukawa T; Hayashizaki Y; Okazaki Y Comprehensive analysis of the mouse metabolome based on the transcriptome | 1 | 3 |
| 29 | 1 | 29 | 45 2003 GENOME RESEARCH 13(6B):1395-1401
Gustincich S; Batalov S; Beisel KW; Bono H; Carninci P; Fletcher CF; Grimmond S; Hirokawa N; Jarvis ED; Jegla T; Kawasawa Y; LeMieux J; Miki H; Raviola E; Teasdale RD; Tominaga N; Yagi K; Zimmer A; Hayashizaki Y; Okazaki Y Analysis of the mouse transcriptome for genes involved in the function of the nervous system | 0 | 3 |
| 30 | 1 | 24 | 47 2003 GENOME RESEARCH 13(6B):1410-1415
Holmes R; Williamson C; Peters J; Denny P; Wells C A comprehensive transcript map of the mouse Gnas imprinted complex | 1 | 3 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 31 | 1 | 37 | 51 2003 GENOME RESEARCH 13(6B):1455-1465
Miki H; Setou M; Hirokawa N Kinesin superfamily proteins (KIFs) in the mouse transcriptome | 1 | 3 |
| 32 | 1 | 10 | 53 2003 GENOME RESEARCH 13(6B):1478-1487
Furuno M; Kasukawa T; Saito R; Adachi J; Suzuki H; Baldarelli R; Hayashizaki Y; Okazaki Y CDS annotation in full-length cDNA sequence | 1 | 3 |
| 33 | 1 | 14 | 54 2003 GENOME RESEARCH 13(6B):1488-1495
Kawai J; Hayashizaki Y DNA book | 2 | 3 |
| 34 | 1 | 14 | 55 2003 GENOME RESEARCH 13(6B):1496-1500
Schriml LM; Hill DP; Blake JA; Bono H; Wynshaw-Boris A; Pavan WJ; Ring BZ; Beisel K; Setou M; Okazaki Y Human disease genes and their cloned mouse orthologs: Exploration of the FANTOM2 cDNA sequence data set | 2 | 3 |
| 35 | 1 | 44 | 72 2003 JOURNAL OF APPLIED PHYSIOLOGY 94(4):1650-1659
Svenson KL; Bogue MA; Peters LL Genetic models in applied physiology - Invited review: Identifying new mouse models of cardiovascular disease: a review of high-throughput screens of mutagenized and inbred strains | 0 | 3 |
| 36 | 1 | 65 | 76 2003 MAMMALIAN GENOME 14(8):565-579
Tuggle CK; Green JA; Fitzsimmons C; Woods R; Prather RS; Malchenko S; Soares MB; Kucaba T; Crouch K; Smith C; Tack D; Robinson N; O'Leary B; Scheetz T; Casavant T; Pomp D; Edeal JB; Zhang YD; Rothschild MF; Garwood K; Beavis W EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human | 1 | 3 |
| 37 | 1 | 48 | 96 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(14):8502-8507
Feng XR; Carlton JM; Joy DA; Mu JB; Furuya T; Suh BB; Wang YF; Barnwell JW; Su XZ Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax | 0 | 3 |
| 38 | 1 | 77 | 4 2003 ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH 27(5):880-888
Schumann G; Spanagel R; Mann K Candidate genes for alcohol dependence: Animal studies | 0 | 2 |
| 39 | 2 | 34 | 9 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 310(2):667-674
Tomaru Y; Kondo SJ; Suzuki M; Hayashizaki Y A comprehensive search for HNF-3 alpha-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis | 0 | 2 |
| 40 | 1 | 53 | 13 2003 CELLULAR AND MOLECULAR LIFE SCIENCES 60(5):854-861
Good L Translation repression by antisense sequences | 0 | 2 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 41 | 1 | 39 | 18 2003 CURRENT OPINION IN LIPIDOLOGY 14(2):115-119
Mooser V; Ordovas JM 'Omic' approaches and lipid metabolism: are these new technologies holding their promises? | 0 | 2 |
| 42 | 1 | 16 | 42 2003 GENOME RESEARCH 13(6B):1360-1365
Wells CA; Ravasi T; Sultana R; Yagi K; Carninci P; Bono H; Faulkner G; Okazaki Y; Quackenbush J; Hume DA; Lyons PA Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage | 1 | 2 |
| 43 | 1 | 35 | 58 2003 GENOME RESEARCH 13(6B):1520-1533
Nagashima T; Silva DG; Petrovsky N; Socha LA; Suzuki H; Saito R; Kasukawa T; Kurochkin IV; Konagaya A; Schonbach C Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS | 2 | 2 |
| 44 | 1 | 67 | 65 2003 GENOME RESEARCH 13(12):2621-2636
Xie T; Rowen L; Aguado B; Ahearn ME; Madan A; Qin SZ; Campbell RD; Hood L Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse | 0 | 2 |
| 45 | 1 | 86 | 73 2003 JOURNAL OF BIOCHEMISTRY 133(6):699-711
Kaneko-Ishino T; Kohda T; Ishino F The regulation and biological significance of genomic imprinting in mammals | 0 | 2 |
| 46 | 1 | 29 | 97 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12147-12152
Iourgenko V; Zhang WJ; Mickanin C; Daly I; Jiang C; Hexham JM; Orth AP; Miraglia L; Meltzer J; Garza D; Chirn GW; McWhinnie E; Cohen D; Skelton J; Terry R; Yu Y; Bodian D; Buxton FP; Zhu JA; Song CZ; Labow MA Identification of a family of cAMP response element-binding protein coactivators by genome-scale functional analysis in mammalian cells | 0 | 2 |
| 47 | 1 | 42 | 98 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12195-12200
Bell SM; Schreiner CM; Waclaw RR; Campbell K; Potter SS; Scott WJ Sp8 is crucial for limb outgrowth and neuropore closure | 0 | 2 |
| 48 | 3 | 20 | 100 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15776-15781
Shiraki T; Kondo S; Katayama S; Waki K; Kasukawa T; Kawaji H; Kodzius R; Watahiki A; Nakamura M; Arakawa T; Fukuda S; Sasaki D; Podhajska A; Harbers M; Kawai J; Carninci P; Hayashizaki Y Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage | 1 | 2 |
| 49 | 2 | 34 | 124 2004 GENOME RESEARCH 14(3):331-342
Kampa D; Cheng J; Kapranov P; Yamanaka M; Brubaker S; Cawley S; Drenkow J; Piccolboni A; Bekiranov S; Helt G; Tammana H; Gingeras TR Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 | 1 | 2 |
| 50 | 1 | 50 | 139 2004 NATURE 429(6989):268-274
Han JS; Szak ST; Boeke JD Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes | 0 | 2 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 51 | 1 | 29 | 140 2004 NATURE GENETICS 36(1):40-45
Ota T; Suzuki Y; Nishikawa T; Otsuki T; Sugiyama T; Irie R; Wakamatsu A; Hayashi K; Sato H; Nagai K; Kimura K; Makita H; Sekine M; Obayashi M; Nishi T; Shibahara T; Tanaka T; Ishii S; Yamamoto J; Saito K; Kawai Y; Isono Y; Nakamura Y; Nagahari K; Murakami K; Yasuda T; Iwayanagi T; Wagatsuma M; Shiratori A; Sudo H; Hosoiri T; Kaku Y; Kodaira H; Kondo H; Sugawara M; Takahashi M; Kanda K; Yokoi T; Furuya T; Kikkawa E; Omura Y; Abe K; Kamihara K; Katsuta N; Sato K; Tanikawa M; Yamazaki M; Ninomiya K; Ishibashi T; Yamashita H; Murakawa K; Fujimori K; Tanai H; Kimata M; Watanabe M; Hiraoka S; Chiba Y; Ishida S; Ono Y; Takiguchi S; Watanabe S; Yosida M; Hotuta T; Kusano J; Kanehori K; Takahashi-Fujii A; Hara H; Tanase T; Nomura Y; Togiya S; Komai F; Hara R; Takeuchi K; Arita M; Imose N; Musashino K; Yuuki H; Oshima A; Sasaki N; Aotsuka S; Yoshikawa Y; Matsunawa H; Ichihara T; Shiohata N; Sano S; Moriya S; Momiyama H; Satoh N; Takami S; Terashima Y; Suzuki O; Nakagawa S; Senoh A; Mizoguchi H; Goto Y; Shimizu F; Wakebe H; Hishigaki H; Watanabe T; Sugiyama A; Takemoto M; Kawakami B; Yamazaki M; Watanabe K; Kumagai A; Itakura S; Fukuzumi Y; Fujimori Y; Komiyama M; Tashiro H; Tanigami A; Fujiwara T; Ono T; Yamada K; Fujii Y; Ozaki K; Hirao M; Ohmori Y; Kawabata A; Hikiji T; Kobatake N; Inagaki H; Ikema Y; Okamoto S; Okitani R; Kawakami T; Noguchi S; Itoh T; Shigeta K; Senba T; Matsumura K; Nakajima Y; Mizuno T; Morinaga M; Sasaki M; Togashi T; Oyama M; Hata H; Watanabe M; Komatsu T; Mizushima-Sugano J; Satoh T; Shirai Y; Takahashi Y; Nakagawa K; Okumura K; Nagase T; Nomura N; Kikuchi H; Masuho Y; Yamashita R; Nakai K; Yada T; Nakamura Y; Ohara O; Isogai T; Sugano S Complete sequencing and characterization of 21,243 full-length human cDNAs | 1 | 2 |
| 52 | 3 | 9 | 148 2004 NUCLEIC ACIDS RESEARCH 32():D476-D481
Bult CJ; Blake JA; Richardson JE; Kadin JA; Eppig JT The Mouse Genome Database (MGD): integrating biology with the genome | 0 | 2 |
| 53 | 2 | 28 | 151 2004 NUCLEIC ACIDS RESEARCH 32():D568-D571
Hill DP; Begley DA; Finger JH; Hayamizu TF; McCright IJ; Smith CM; Beal JS; Corbani LE; Blake JA; Eppig JT; Kadin JA; Richardson JE; Ringwald M The mouse Gene Expression Database (GXD): updates and enhancements | 0 | 2 |
| 54 | 1 | 24 | 1 2002 CYTOGENETIC AND GENOME RESEARCH 99(1-4):151-156
Kiyosawa H; Abe K Speculations on the role of natural antisense transcripts in mammalian X chromosome evolution | 2 | 1 |
| 55 | 1 | 36 | 7 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 305(4):840-845
Wang LJ; Urbauer RJB; Urbauer JL; Benson DR House fly cytochrome b(5) exhibits kinetically trapped hemin and selectivity in hemin binding | 0 | 1 |
| 56 | 1 | 132 | 11 2003 BIOPOLYMERS 70(1):4-18
Hermann T Chemical and functional diversity of small molecule ligands for RNA | 0 | 1 |
| 57 | 1 | 23 | 21 2003 DNA RESEARCH 10(1):49-57
Jikuya H; Takano J; Kikuno R; Hirosawa M; Nagase T; Nomura N; Ohara O Characterization of long cDNA clones from human adult spleen. II. The complete sequences of 81 cDNA clones | 0 | 1 |
| 58 | 1 | 35 | 23 2003 GENE 310():17-28
Shimizu H; Taniguchi H; Hippo Y; Hayashizaki Y; Aburatani H; Ishikawa T Characterization of the mouse Abcc12 gene and its transcript encoding an ATP-binding cassette transporter, an orthologue of human ABCC12 | 0 | 1 |
| 59 | 1 | 29 | 24 2003 GENE 318():137-147
Gardiner K; Fortna A; Bechtel L; Davisson MT Mouse models of Down syndrome: how useful can they be? Comparison of the gene content of human chromosome 21 with orthologous mouse genomic regions | 0 | 1 |
| 60 | 1 | 4 | 32 2003 GENOME RESEARCH 13(6B):1267-1272
Okazaki Y; Hume DA A guide to the mammalian genome - Commentary | 1 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 61 | 1 | 24 | 41 2003 GENOME RESEARCH 13(6B):1350-1359
Grimmond SM; Miranda KC; Yuan Z; Davis MJ; Hume DA; Yagi K; Tominaga N; Bono H; Hayashizaki Y; Okazaki Y; Teasdale RD The mouse secretome: Functional classification of the proteins secreted into the extracellular environment | 0 | 1 |
| 62 | 1 | 13 | 44 2003 GENOME RESEARCH 13(6B):1389-1394
Semple CAM The comparative proteomics of ubiquitination in mouse | 0 | 1 |
| 63 | 1 | 41 | 50 2003 GENOME RESEARCH 13(6B):1443-1454
Forrest ARR; Ravasi T; Taylor D; Huber T; Hume DA; Grimmond S Phosphoregulators: Protein kinases and protein phosphatases of mouse | 0 | 1 |
| 64 | 1 | 62 | 52 2003 GENOME RESEARCH 13(6B):1466-1477
Kawasawa Y; McKenzie LM; Hill DP; Bono H; Yanagisawa M G protein-coupled receptor genes in the FANTOM2 database | 0 | 1 |
| 65 | 1 | 34 | 59 2003 GENOME RESEARCH 13(6B):1534-1541
Suzuki H; Saito R; Kanamori M; Kai C; Schonbach C; Nagashima T; Hosaka J; Hayashizaki Y The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer | 1 | 1 |
| 66 | 1 | 2 | 62 2003 GENOME RESEARCH 13(6B):1554-1555
Kiyosawa H; Kawashima T; Hasegawa Y; Yamanaka I; Sakai K; Kondo S; Hayashizaki Y Introduction of RIKEN-GenoMapper, mapping viewer system | 1 | 1 |
| 67 | 2 | 62 | 74 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(50):50691-50701
Futaki S; Hayashi Y; Yamashita M; Yagi K; Bono H; Hayashizaki Y; Okazaki Y; Sekiguchi K Molecular basis of constitutive production of basement membrane components - Gene expression profiles of Engelbreth-Holm-Swarm tumor and F9 embryonal carcinoma cells | 0 | 1 |
| 68 | 1 | 17 | 89 2003 NUCLEIC ACIDS RESEARCH 31(13):3608-3612
Grillo G; Licciulli F; Liuni S; Sbisa E; Pesole G PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences | 0 | 1 |
| 69 | 1 | 41 | 93 2003 PLOS BIOLOGY 1(3):410-419
Sharov AA; Piao YL; Matoba R; Dudekula DB; Qian Y; Vanburen V; Falco G; Martin PR; Stagg CA; Bassey UC; Wang YX; Carter MG; Hamatani T; Aiba K; Akutsu H; Sharova L; Tanaka TS; Kimber WL; Yoshikawa T; Jaradat SA; Pantano S; Nagaraja R; Boheler KR; Taub D; Hodes RJ; Longo DL; Schlessinger D; Keller J; Klotz E; Kelsoe G; Umezawa A; Vescovi AL; Rossant J; Kunath T; Hogan BLM; Curci A; D'Urso M; Kelso J; Hide W; Ko MSH Transcriptome analysis of mouse stem cells and early embryos | 0 | 1 |
| 70 | 1 | 103 | 101 2003 REPRODUCTION 125(4):457-468
Stanton JAL; Macgregor AB; Green DPL Gene expression in the mouse preimplantation embryo | 0 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 71 | 1 | 98 | 142 2004 NATURE REVIEWS GENETICS 5(4):276-287
Wasserman WW; Sandelin A Applied bioinformatics for the identification of regulatory elements | 0 | 1 |
| 72 | 8 | 80 | 143 2004 NATURE REVIEWS GENETICS 5(4):316-323
Mattick JS RNA regulation: a new genetics? | 0 | 1 |
| 73 | 1 | 10 | 144 2004 NUCLEIC ACIDS RESEARCH 32():D78-D81
Suzuki Y; Yamashita R; Sugano S; Nakai K DBTSS, DataBase of Transcriptional Start Sites: progress report 2004 | 0 | 1 |
| 74 | 1 | 20 | 146 2004 NUCLEIC ACIDS RESEARCH 32():D383-D387
Yazaki J; Kojima K; Suzuki K; Kishimoto N; Kikuchi S The Rice PIPELINE: a unification tool for plant functional genomics | 0 | 1 |
| 75 | 2 | 36 | 152 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(16):6062-6067
Su AI; Wiltshire T; Batalov S; Lapp H; Ching KA; Block D; Zhang J; Soden R; Hayakawa M; Kreiman G; Cooke MP; Walker JR; Hogenesch JB A gene atlas of the mouse and human protein-encoding transcriptomes | 0 | 1 |
| 76 | 1 | 67 | 158 2004 TRENDS IN BIOTECHNOLOGY 22(1):23-30
Ruan YJ; Le Ber P; Ng HH; Liu ET Interrogating the transcriptome | 0 | 1 |
| 77 | 1 | 176 | 3 2003 ADVANCED DRUG DELIVERY REVIEWS 55(8):1081-1112
Stone LS; Vulchanova L The pain of antisense: in vivo application of antisense oligonucleotides for functional genomics in pain and analgesia | 0 | 0 |
| 78 | 1 | 24 | 5 2003 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 2812():462-475
Shibuya T; Kurochkin I Match chaining algorithms for cDNA mapping | 0 | 0 |
| 79 | 1 | 30 | 6 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 301(3):633-640
Saito R; Suzuki H; Hayashizaki Y Global insights into protein complexes through integrated analysis of the reliable interactome and knockout lethality | 0 | 0 |
| 80 | 1 | 25 | 8 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 308(4):872-877
Oda R; Yaoi T; Okajima S; Kobashi H; Kubo T; Fushiki S A novel marker for terminal Schwann cells, homocysteine-responsive ER-resident protein, as isolated by a single cell PCR-differential display | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 81 | 2 | 16 | 12 2003 BIOTECHNIQUES 35(3):510-+
Hirozane-Kishikawa T; Shiraki T; Waki K; Nakamura M; Arakawa T; Kawai J; Fagiolini M; Hensch TK; Hayashizaki Y; Carninci P Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts | 0 | 0 |
| 82 | 1 | 40 | 14 2003 COMPTES RENDUS BIOLOGIES 326(10-11):931-940
Carter MG; Piao YL; Dudekula DB; Qian Y; VanBuren V; Sharov AA; Tanaka TS; Martin PR; Bassey UC; Stagg CA; Aiba K; Hamatani T; Matoba R; Kargul GJ; Ko MSH The NIA cDNA Project in mouse stem cells and early embryos | 0 | 0 |
| 83 | 1 | 8 | 15 2003 COMPTES RENDUS BIOLOGIES 326(10-11):967-970
Dalla E; Verardo R; Lazarevic D; Marchionni L; Reid JF; Bahar N; Klaric E; Marcuzzi G; Marzio R; Belgrano A; Licastro D; Schneider C LNCIB human full-length cDNAs collection: towards a better comprehension of the human transcriptome | 0 | 0 |
| 84 | 1 | 11 | 16 2003 COMPTES RENDUS BIOLOGIES 326(10-11):971-977
Gunaratne PH; Wu JQ; Garcia AM; Hulyk S; Worley KC; Margolin JF; Gibbs RA Concatenation cDNA sequencing for transcriptome analysis | 0 | 0 |
| 85 | 1 | 70 | 19 2003 CYTOGENETIC AND GENOME RESEARCH 103(3-4):210-216
Elliott D Pathways of post-transcriptional gene regulation in mammalian germ cell development | 0 | 0 |
| 86 | 1 | 28 | 22 2003 FEBS LETTERS 554(1-2):17-22
Fujimori S; Washio T; Higo K; Ohtomo Y; Murakami K; Matsubara K; Kawai J; Carninci P; Hayashizaki Y; Kikuchi S; Tomita M A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription | 0 | 0 |
| 87 | 1 | 28 | 25 2003 GENE 321():103-112
Baranova A; Hammarsund M; Ivanova D; Skoblov M; Sangfelt O; Corcoran M; Borodina T; Makeeva N; Pestova A; Tyazhelova T; Nazarenko S; Gorreta F; Alsheddi T; Schlauch K; Nikitin E; Kapanadze B; Shagin D; Poltaraus A; Vorobiev AI; Zabarovsky E; Lukianov S; Chandhoke V; Ibbotson R; Oscier D; Einhorn S; Grander D; Yankovsky N Distinct organization of the candidate tumor suppressor gene RFP2 in human and mouse: multiple mRNA isoforms in both species-and human-specific antisense transcript RFP2OS | 0 | 0 |
| 88 | 1 | 19 | 26 2003 GENE EXPRESSION PATTERNS 3(6):735-741
Holmes G; Crooijmans R; Groenen M; Niswander L ALC ((a)under-bardjacent to (L)under-barMX1 in (c)under-barhick) is a novel dorsal limb mesenchyme marker | 0 | 0 |
| 89 | 1 | 41 | 29 2003 GENETICS 165(4):1823-1830
Noor MAF; Michalak P; Donze D Characterization of a male-predominant antisense transcript underexpressed in hybrids of Drosophila pseudoobscura and D-persimilis | 0 | 0 |
| 90 | 2 | 19 | 30 2003 GENOME BIOLOGY 4(4):-
Rossant J; Scherer SW The mouse genome sequence - the end of the tail, or just the beginning? | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 91 | 2 | 67 | 31 2003 GENOME BIOLOGY 4(12):-
Abbott DE; Pritchard C; Clegg NJ; Ferguson C; Dumpit R; Sikes RA; Nelson PS Expressed sequence tag profiling identifies developmental and anatomic partitioning of gene expression in the mouse prostate | 0 | 0 |
| 92 | 1 | 55 | 36 2003 GENOME RESEARCH 13(6B):1307-1317
Brusic V; Pillai RS; Silva DG; Petrovsky N; Schonbach C Cytokine-related genes identified from the RIKEN full-length mouse cDNA data set | 0 | 0 |
| 93 | 1 | 36 | 43 2003 GENOME RESEARCH 13(6B):1366-1375
Forrest ARR; Taylor D; Grimmond S Exploration of the cell-cycle genes found within the RIKEN FANTOM2 data set | 0 | 0 |
| 94 | 1 | 32 | 46 2003 GENOME RESEARCH 13(6B):1402-1409
Nikaido L; Saito C; Mizuno Y; Meguro M; Bono H; Kadomura M; Kono T; Morris GA; Lyons PA; Oshimura M; Hayashizaki Y; Okazaki Y Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling | 0 | 0 |
| 95 | 1 | 87 | 48 2003 GENOME RESEARCH 13(6B):1416-1429
Tajul-Arifin K; Teasdale R; Ravasi T; Hume DA; Mattick JS Identification and analysis of chromodomain-containing proteins encoded in the mouse transcriptome | 0 | 0 |
| 96 | 1 | 15 | 56 2003 GENOME RESEARCH 13(6B):1501-1504
Lenhard B; Wahlestedt C; Wasserman WW GeneLynx Mouse: Integrated portal to the mouse genome | 0 | 0 |
| 97 | 1 | 4 | 61 2003 GENOME RESEARCH 13(6B):1552-1553
Batalov S; Fletcher CF Exon structure analysis, ortholog identification, and SNP candidate screening by mapping mouse RIKEN sequences to multiple genome assemblies | 0 | 0 |
| 98 | 1 | 2 | 63 2003 GENOME RESEARCH 13(6B):1556-1557
Batalov S; Su AI; Ching KA; Fletcher CF Functional annotation of RIKEN mouse cDNA clones using GNF expression atlas | 0 | 0 |
| 99 | 1 | 53 | 66 2003 GENOME RESEARCH 13(12):2747-2753
Clark MS; Edwards YJK; Peterson D; Clifton SW; Thompson AJ; Sasaki M; Suzuki Y; Kikuchi K; Watabe S; Kawakami K; Sugano S; Elgar G; Johnson SL Fugu ESTs: New resources for transcription analysis and genome annotation | 0 | 0 |
| 100 | 1 | 29 | 67 2003 HERALD OF THE RUSSIAN ACADEMY OF SCIENCES 73(3):262-269
Sverdlov ED DNA in a cell: From a molecular icon to the problem of "what is life?" | 0 | 0 |
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