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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y. Okazaki et al. NATURE 420 (6915): 563-573 DEC 5 2002 and the citing papers. |
Nodes: 159
Authors: 1113,
Journals: 70,
Outer References: 5312
Collection span: 2002 - 2004
View: Overview. Sorted by LCR.
Page 1: 1 2
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
|---|---|---|---|---|---|
| 1 | 8 | 80 | 143 2004 NATURE REVIEWS GENETICS 5(4):316-323
Mattick JS RNA regulation: a new genetics? | 0 | 1 |
| 2 | 6 | 39 | 159 2004 TRENDS IN BIOTECHNOLOGY 22(4):161-167
Hayashizaki Y; Kanamori M Dynamic transcriptome of mice | 0 | 0 |
| 3 | 5 | 52 | 120 2004 GENOME BIOLOGY 5(1):-
Osato N; Yamada H; Satoh K; Ooka H; Yamamoto M; Suzuki K; Kawai J; Carninci P; Ohtomo Y; Murakami K; Matsubara K; Kikuchi S; Hayashizaki Y Antisense transcripts with rice full-length cDNAs | 0 | 0 |
| 4 | 4 | 39 | 85 2003 NATURE REVIEWS GENETICS 4(9):741-749
Wang J; Li ST; Zhang Y; Zheng HK; Xu Z; Ye J; Yu J; Wong GKS Vertebrate gene predictions and the problem of large genes | 0 | 0 |
| 5 | 4 | 21 | 111 2004 BMC GENOMICS 5():-
Silva DG; Schonbach C; Brusic V; Socha LA; Nagashima T; Petrovsky N Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system | 0 | 0 |
| 6 | 4 | 24 | 116 2004 FEBS LETTERS 559(1-3):22-26
Kodzius R; Matsumura Y; Kasukawa T; Shimokawa K; Fukuda S; Shiraki T; Nakamura M; Arakawa T; Sasaki D; Kawai J; Harbers M; Carninci P; Hayashizaki Y Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags | 0 | 0 |
| 7 | 4 | 196 | 131 2004 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37(1):93-106
Castrillo JO; Oliver SG Yeast as a touchstone in post-genomic research: Strategies for integrative analysis in functional genomics | 0 | 0 |
| 8 | 4 | 25 | 141 2004 NATURE REVIEWS GENETICS 5(3):223-228
Hayashizaki Y; Kawai J Innovation - A new approach to the distribution and storage of genetic resources | 0 | 0 |
| 9 | 4 | 16 | 149 2004 NUCLEIC ACIDS RESEARCH 32():D548-D551
Nikaido I; Saito C; Wakamoto A; Tomaru Y; Arakawa T; Hayashizaki Y; Okazaki Y EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes | 0 | 0 |
| 10 | 4 | 78 | 155 2004 PROTEOMICS 4(6):1712-1726
Southan C Has the yo-yo stopped? - An assessment of human protein-coding gene number | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 11 | 3 | 20 | 100 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15776-15781
Shiraki T; Kondo S; Katayama S; Waki K; Kasukawa T; Kawaji H; Kodzius R; Watahiki A; Nakamura M; Arakawa T; Fukuda S; Sasaki D; Podhajska A; Harbers M; Kawai J; Carninci P; Hayashizaki Y Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage | 1 | 2 |
| 12 | 3 | 44 | 114 2004 CURRENT OPINION IN CHEMICAL BIOLOGY 8(1):20-25
Rual JF; Hill DE; Vidal M ORFeome projects: gateway between genomics and omics | 0 | 0 |
| 13 | 3 | 25 | 123 2004 GENOME RESEARCH 14(2):280-286
Veeramachaneni V; Makalowski W; Galdzicki M; Sood R; Makalowska I Mammalian overlapping genes: The comparative perspective | 0 | 0 |
| 14 | 3 | 87 | 127 2004 GENOMICS 83(6):1012-1023
Beisel KW; Shiraki T; Morris KA; Pompeia C; Kachar B; Arakawa T; Bono H; Kawai J; Hayashizaki Y; Carninci P Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library | 0 | 0 |
| 15 | 3 | 24 | 147 2004 NUCLEIC ACIDS RESEARCH 32():D471-D475
Nagashima T; Matsuda H; Silva DG; Petrovsky N; Konagaya A; Schonbach C FREP: a database of functional repeats in mouse cDNAs | 0 | 0 |
| 16 | 3 | 9 | 148 2004 NUCLEIC ACIDS RESEARCH 32():D476-D481
Bult CJ; Blake JA; Richardson JE; Kadin JA; Eppig JT The Mouse Genome Database (MGD): integrating biology with the genome | 0 | 2 |
| 17 | 3 | 42 | 157 2004 TRENDS IN BIOCHEMICAL SCIENCES 29(2):88-94
Lavorgna G; Dahary D; Lehner B; Sorek R; Sanderson CM; Casari G In search of antisense | 0 | 0 |
| 18 | 2 | 34 | 9 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 310(2):667-674
Tomaru Y; Kondo SJ; Suzuki M; Hayashizaki Y A comprehensive search for HNF-3 alpha-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis | 0 | 2 |
| 19 | 2 | 16 | 12 2003 BIOTECHNIQUES 35(3):510-+
Hirozane-Kishikawa T; Shiraki T; Waki K; Nakamura M; Arakawa T; Kawai J; Fagiolini M; Hensch TK; Hayashizaki Y; Carninci P Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts | 0 | 0 |
| 20 | 2 | 19 | 30 2003 GENOME BIOLOGY 4(4):-
Rossant J; Scherer SW The mouse genome sequence - the end of the tail, or just the beginning? | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 21 | 2 | 67 | 31 2003 GENOME BIOLOGY 4(12):-
Abbott DE; Pritchard C; Clegg NJ; Ferguson C; Dumpit R; Sikes RA; Nelson PS Expressed sequence tag profiling identifies developmental and anatomic partitioning of gene expression in the mouse prostate | 0 | 0 |
| 22 | 2 | 62 | 74 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(50):50691-50701
Futaki S; Hayashi Y; Yamashita M; Yagi K; Bono H; Hayashizaki Y; Okazaki Y; Sekiguchi K Molecular basis of constitutive production of basement membrane components - Gene expression profiles of Engelbreth-Holm-Swarm tumor and F9 embryonal carcinoma cells | 0 | 1 |
| 23 | 2 | 41 | 102 2003 SCIENCE 302(5646):842-846
Yamada K; Lim J; Dale JM; Chen HM; Shinn P; Palm CJ; Southwick AM; Wu HC; Kim C; Nguyen M; Pham P; Cheuk R; Karlin-Newmann G; Liu SX; Lam B; Sakano H; Wu T; Yu GX; Miranda M; Quach HL; Tripp M; Chang CH; Lee JM; Toriumi M; Chan MMH; Tang CC; Onodera CS; Deng JM; Akiyama K; Ansari Y; Arakawa T; Banh J; Banno F; Bowser L; Brooks S; Carninci P; Chao QM; Choy N; Enju A; Goldsmith AD; Gurjal M; Hansen NF; Hayashizaki Y; Johnson-Hopson C; Hsuan VW; Iida K; Karnes M; Khan S; Koesema E; Ishida J; Jiang PX; Jones T; Kawai J; Kamiya A; Meyers C; Nakajima M; Narusaka M; Seki M; Sakurai T; Satou M; Tamse R; Vaysberg M; Wallender EK; Wong C; Yamamura Y; Yuan SL; Shinozaki K; Davis RW; Theologis A; Ecker JR Empirical analysis of transcriptional activity in the Arabidopsis genome | 3 | 17 |
| 24 | 2 | 32 | 104 2004 ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 425(2):221-232
Lo PK; Wang FF 5 '-Heterogeneity of mouse Dda3 transcripts is attributed to differential initiation of transcription and alternative splicing | 0 | 0 |
| 25 | 2 | 24 | 110 2004 BIOTECHNIQUES 36(4):690-+
Wu JQ; Garcia AM; Hulyk S; Sneed A; Kowis C; Yuan Y; Steffen D; McPherson JD; Gunaratne PH; Gibbs RA Large-scale RT-PCR recovery of full-length cDNA clones | 0 | 0 |
| 26 | 2 | 74 | 117 2004 GENE 325():63-78
Retta SF; Avolio M; Francalanci F; Procida S; Balzac F; Degani S; Tarone G; Silengo L Identification of Krit1B: a novel alternative splicing isoform of cerebral cavernous malformation gene-1 | 0 | 0 |
| 27 | 2 | 73 | 121 2004 GENOME BIOLOGY 5(4):-
Shabalina SA; Spiridonov NA The mammalian transcriptome and the function of non-coding DNA sequences | 0 | 0 |
| 28 | 2 | 34 | 124 2004 GENOME RESEARCH 14(3):331-342
Kampa D; Cheng J; Kapranov P; Yamanaka M; Brubaker S; Cawley S; Drenkow J; Piccolboni A; Bekiranov S; Helt G; Tammana H; Gingeras TR Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 | 1 | 2 |
| 29 | 2 | 32 | 125 2004 GENOME RESEARCH 14(3):463-471
Porcel BM; Delfour O; Castelli V; De Berardinis V; Friedlander L; Cruaud C; Ureta-Vidal A; Scarpelli C; Wincker P; Schachter V; Saurin W; Gyapay G; Salanoubat M; Weissenbach J Numerous novel annotations of the human genome sequence supported by a 5 '-end-enriched cDNA collection | 0 | 0 |
| 30 | 2 | 66 | 129 2004 INTERNAL MEDICINE JOURNAL 34(3):79-90
Kiyosawa H; Kawashima T; Silva D; Petrovsky N; Hasegawa Y; Sakai K; Hayashizaki Y Systematic genome-wide approach to positional candidate cloning for identification of novel human disease genes | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 31 | 2 | 53 | 133 2004 JOURNAL OF NEUROBIOLOGY 58(2):201-206
Setou M; Hayasaka T; Yao I Axonal transport versus dendritic transport | 0 | 0 |
| 32 | 2 | 28 | 151 2004 NUCLEIC ACIDS RESEARCH 32():D568-D571
Hill DP; Begley DA; Finger JH; Hayamizu TF; McCright IJ; Smith CM; Beal JS; Corbani LE; Blake JA; Eppig JT; Kadin JA; Richardson JE; Ringwald M The mouse Gene Expression Database (GXD): updates and enhancements | 0 | 2 |
| 33 | 2 | 36 | 152 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(16):6062-6067
Su AI; Wiltshire T; Batalov S; Lapp H; Ching KA; Block D; Zhang J; Soden R; Hayakawa M; Kreiman G; Cooke MP; Walker JR; Hogenesch JB A gene atlas of the mouse and human protein-encoding transcriptomes | 0 | 1 |
| 34 | 2 | 18 | 153 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(22):8366-8371
Abramowitz J; Grenet D; Birnbaumer M; Torres HN; Birnbaumer L XL alpha s, the extra-long form of the alpha-subunit of the Gs G protein, is significantly longer than suspected, and so is its companion Alex | 0 | 0 |
| 35 | 2 | 58 | 156 2004 REPRODUCTION FERTILITY AND DEVELOPMENT 16(1-2):79-85
Ko MSH Embryogenomics of pre-implantation mammalian development: current status | 0 | 0 |
| 36 | 1 | 24 | 1 2002 CYTOGENETIC AND GENOME RESEARCH 99(1-4):151-156
Kiyosawa H; Abe K Speculations on the role of natural antisense transcripts in mammalian X chromosome evolution | 2 | 1 |
| 37 | 1 | 176 | 3 2003 ADVANCED DRUG DELIVERY REVIEWS 55(8):1081-1112
Stone LS; Vulchanova L The pain of antisense: in vivo application of antisense oligonucleotides for functional genomics in pain and analgesia | 0 | 0 |
| 38 | 1 | 77 | 4 2003 ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH 27(5):880-888
Schumann G; Spanagel R; Mann K Candidate genes for alcohol dependence: Animal studies | 0 | 2 |
| 39 | 1 | 24 | 5 2003 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 2812():462-475
Shibuya T; Kurochkin I Match chaining algorithms for cDNA mapping | 0 | 0 |
| 40 | 1 | 30 | 6 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 301(3):633-640
Saito R; Suzuki H; Hayashizaki Y Global insights into protein complexes through integrated analysis of the reliable interactome and knockout lethality | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 41 | 1 | 36 | 7 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 305(4):840-845
Wang LJ; Urbauer RJB; Urbauer JL; Benson DR House fly cytochrome b(5) exhibits kinetically trapped hemin and selectivity in hemin binding | 0 | 1 |
| 42 | 1 | 25 | 8 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 308(4):872-877
Oda R; Yaoi T; Okajima S; Kobashi H; Kubo T; Fushiki S A novel marker for terminal Schwann cells, homocysteine-responsive ER-resident protein, as isolated by a single cell PCR-differential display | 0 | 0 |
| 43 | 1 | 104 | 10 2003 BIOESSAYS 25(10):930-939
Mattick JS Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms | 2 | 7 |
| 44 | 1 | 132 | 11 2003 BIOPOLYMERS 70(1):4-18
Hermann T Chemical and functional diversity of small molecule ligands for RNA | 0 | 1 |
| 45 | 1 | 53 | 13 2003 CELLULAR AND MOLECULAR LIFE SCIENCES 60(5):854-861
Good L Translation repression by antisense sequences | 0 | 2 |
| 46 | 1 | 40 | 14 2003 COMPTES RENDUS BIOLOGIES 326(10-11):931-940
Carter MG; Piao YL; Dudekula DB; Qian Y; VanBuren V; Sharov AA; Tanaka TS; Martin PR; Bassey UC; Stagg CA; Aiba K; Hamatani T; Matoba R; Kargul GJ; Ko MSH The NIA cDNA Project in mouse stem cells and early embryos | 0 | 0 |
| 47 | 1 | 8 | 15 2003 COMPTES RENDUS BIOLOGIES 326(10-11):967-970
Dalla E; Verardo R; Lazarevic D; Marchionni L; Reid JF; Bahar N; Klaric E; Marcuzzi G; Marzio R; Belgrano A; Licastro D; Schneider C LNCIB human full-length cDNAs collection: towards a better comprehension of the human transcriptome | 0 | 0 |
| 48 | 1 | 11 | 16 2003 COMPTES RENDUS BIOLOGIES 326(10-11):971-977
Gunaratne PH; Wu JQ; Garcia AM; Hulyk S; Worley KC; Margolin JF; Gibbs RA Concatenation cDNA sequencing for transcriptome analysis | 0 | 0 |
| 49 | 1 | 56 | 17 2003 CURRENT OPINION IN CELL BIOLOGY 15(3):281-289
Andersen AA; Panning B Epigenetic gene regulation by noncoding RNAs | 1 | 10 |
| 50 | 1 | 39 | 18 2003 CURRENT OPINION IN LIPIDOLOGY 14(2):115-119
Mooser V; Ordovas JM 'Omic' approaches and lipid metabolism: are these new technologies holding their promises? | 0 | 2 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 51 | 1 | 70 | 19 2003 CYTOGENETIC AND GENOME RESEARCH 103(3-4):210-216
Elliott D Pathways of post-transcriptional gene regulation in mammalian germ cell development | 0 | 0 |
| 52 | 1 | 46 | 20 2003 DEVELOPMENT GENES AND EVOLUTION 213(5-6):222-234
Wada S; Tokuoka M; Shoguchi E; Kobayashi K; Di Gregorio A; Spagnuolo A; Branno M; Kohara Y; Rokhsar D; Levine M; Saiga H; Satoh N; Satou Y A genomewide survey of developmentally relevant genes in Ciona intestinalis - II. Genes for homeobox transcription factors | 0 | 5 |
| 53 | 1 | 23 | 21 2003 DNA RESEARCH 10(1):49-57
Jikuya H; Takano J; Kikuno R; Hirosawa M; Nagase T; Nomura N; Ohara O Characterization of long cDNA clones from human adult spleen. II. The complete sequences of 81 cDNA clones | 0 | 1 |
| 54 | 1 | 28 | 22 2003 FEBS LETTERS 554(1-2):17-22
Fujimori S; Washio T; Higo K; Ohtomo Y; Murakami K; Matsubara K; Kawai J; Carninci P; Hayashizaki Y; Kikuchi S; Tomita M A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription | 0 | 0 |
| 55 | 1 | 35 | 23 2003 GENE 310():17-28
Shimizu H; Taniguchi H; Hippo Y; Hayashizaki Y; Aburatani H; Ishikawa T Characterization of the mouse Abcc12 gene and its transcript encoding an ATP-binding cassette transporter, an orthologue of human ABCC12 | 0 | 1 |
| 56 | 1 | 29 | 24 2003 GENE 318():137-147
Gardiner K; Fortna A; Bechtel L; Davisson MT Mouse models of Down syndrome: how useful can they be? Comparison of the gene content of human chromosome 21 with orthologous mouse genomic regions | 0 | 1 |
| 57 | 1 | 28 | 25 2003 GENE 321():103-112
Baranova A; Hammarsund M; Ivanova D; Skoblov M; Sangfelt O; Corcoran M; Borodina T; Makeeva N; Pestova A; Tyazhelova T; Nazarenko S; Gorreta F; Alsheddi T; Schlauch K; Nikitin E; Kapanadze B; Shagin D; Poltaraus A; Vorobiev AI; Zabarovsky E; Lukianov S; Chandhoke V; Ibbotson R; Oscier D; Einhorn S; Grander D; Yankovsky N Distinct organization of the candidate tumor suppressor gene RFP2 in human and mouse: multiple mRNA isoforms in both species-and human-specific antisense transcript RFP2OS | 0 | 0 |
| 58 | 1 | 19 | 26 2003 GENE EXPRESSION PATTERNS 3(6):735-741
Holmes G; Crooijmans R; Groenen M; Niswander L ALC ((a)under-bardjacent to (L)under-barMX1 in (c)under-barhick) is a novel dorsal limb mesenchyme marker | 0 | 0 |
| 59 | 1 | 72 | 27 2003 GENES & DEVELOPMENT 17(8):991-1008
Lim LP; Lau NC; Weinstein EG; Abdelhakim A; Yekta S; Rhoades MW; Burge CB; Bartel DP The microRNAs of Caenorhabditis elegans | 0 | 51 |
| 60 | 1 | 78 | 28 2003 GENETICS 163(4):1227-1235
Paigen K One hundred years of mouse genetics: An intellectual history. II. The molecular revolution (1981-2002) (Reprinted from The New Yorker, 2003) | 0 | 3 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 61 | 1 | 41 | 29 2003 GENETICS 165(4):1823-1830
Noor MAF; Michalak P; Donze D Characterization of a male-predominant antisense transcript underexpressed in hybrids of Drosophila pseudoobscura and D-persimilis | 0 | 0 |
| 62 | 1 | 4 | 32 2003 GENOME RESEARCH 13(6B):1267-1272
Okazaki Y; Hume DA A guide to the mammalian genome - Commentary | 1 | 1 |
| 63 | 1 | 64 | 33 2003 GENOME RESEARCH 13(6B):1273-1289
Carninci P; Waki K; Shiraki T; Konno H; Shibata K; Itoh M; Aizawa K; Arakawa T; Ishii Y; Sasaki D; Bono H; Kondo S; Sugahara Y; Saito R; Osato N; Fukuda S; Sato K; Watahiki A; Hirozane-Kishikawa T; Nakamura M; Shibata Y; Yasunishi A; Kikuchi N; Yoshiki A; Kusakabe M; Gustincich S; Beisel K; Pavan W; Aidinis V; Nakagawara A; Held WA; Iwata H; Kono T; Nakauchi H; Lyons P; Wells C; Hume DA; Fagiolini M; Hensch TK; Brinkmeier M; Camper S; Hirota J; Mombaerts P; Muramatsu M; Okazaki Y; Kawai J; Hayashizaki Y Targeting a complex transcriptome: The construction of the mouse full-length cDNA encyclopedia | 6 | 11 |
| 64 | 1 | 51 | 34 2003 GENOME RESEARCH 13(6B):1290-1300
Zavolan M; Kondo S; Schonbach C; Adachi J; Hume DA; Hayashizaki Y; Gaasterland T Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome | 3 | 9 |
| 65 | 1 | 43 | 35 2003 GENOME RESEARCH 13(6B):1301-1306
Numata K; Kanai A; Saito R; Kondo S; Adachi J; Wilming LG; Hume DA; Hayashizaki Y; Tomita M Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection | 3 | 7 |
| 66 | 1 | 55 | 36 2003 GENOME RESEARCH 13(6B):1307-1317
Brusic V; Pillai RS; Silva DG; Petrovsky N; Schonbach C Cytokine-related genes identified from the RIKEN full-length mouse cDNA data set | 0 | 0 |
| 67 | 1 | 16 | 37 2003 GENOME RESEARCH 13(6B):1318-1323
Bono H; Yagi K; Kasukawa T; Nikaido I; Tominaga N; Miki R; Mizuno Y; Tomaru Y; Goto H; Nitanda H; Shimizu D; Makino H; Morita T; Fujiyama J; Sakai T; Shimoji T; Hume DA; Hayashizaki Y; Okazaki Y Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays | 4 | 5 |
| 68 | 1 | 113 | 38 2003 GENOME RESEARCH 13(6B):1324-1334
Kiyosawa H; Yamanaka I; Osato N; Kondo S; Hayashizaki Y Antisense transcripts with FANTOM2 clone set and their implications for gene regulation | 6 | 13 |
| 69 | 1 | 30 | 39 2003 GENOME RESEARCH 13(6B):1335-1344
Kanapin A; Batalov S; Davis MJ; Gough J; Grimmond S; Kawaji H; Magrane M; Matsuda H; Schonbach C; Teasdale RD; Yuan Z Mouse proteome analysis | 1 | 5 |
| 70 | 1 | 16 | 40 2003 GENOME RESEARCH 13(6B):1345-1349
Bono H; Nikaido I; Kasukawa T; Hayashizaki Y; Okazaki Y Comprehensive analysis of the mouse metabolome based on the transcriptome | 1 | 3 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 71 | 1 | 24 | 41 2003 GENOME RESEARCH 13(6B):1350-1359
Grimmond SM; Miranda KC; Yuan Z; Davis MJ; Hume DA; Yagi K; Tominaga N; Bono H; Hayashizaki Y; Okazaki Y; Teasdale RD The mouse secretome: Functional classification of the proteins secreted into the extracellular environment | 0 | 1 |
| 72 | 1 | 16 | 42 2003 GENOME RESEARCH 13(6B):1360-1365
Wells CA; Ravasi T; Sultana R; Yagi K; Carninci P; Bono H; Faulkner G; Okazaki Y; Quackenbush J; Hume DA; Lyons PA Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage | 1 | 2 |
| 73 | 1 | 36 | 43 2003 GENOME RESEARCH 13(6B):1366-1375
Forrest ARR; Taylor D; Grimmond S Exploration of the cell-cycle genes found within the RIKEN FANTOM2 data set | 0 | 0 |
| 74 | 1 | 13 | 44 2003 GENOME RESEARCH 13(6B):1389-1394
Semple CAM The comparative proteomics of ubiquitination in mouse | 0 | 1 |
| 75 | 1 | 29 | 45 2003 GENOME RESEARCH 13(6B):1395-1401
Gustincich S; Batalov S; Beisel KW; Bono H; Carninci P; Fletcher CF; Grimmond S; Hirokawa N; Jarvis ED; Jegla T; Kawasawa Y; LeMieux J; Miki H; Raviola E; Teasdale RD; Tominaga N; Yagi K; Zimmer A; Hayashizaki Y; Okazaki Y Analysis of the mouse transcriptome for genes involved in the function of the nervous system | 0 | 3 |
| 76 | 1 | 32 | 46 2003 GENOME RESEARCH 13(6B):1402-1409
Nikaido L; Saito C; Mizuno Y; Meguro M; Bono H; Kadomura M; Kono T; Morris GA; Lyons PA; Oshimura M; Hayashizaki Y; Okazaki Y Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling | 0 | 0 |
| 77 | 1 | 24 | 47 2003 GENOME RESEARCH 13(6B):1410-1415
Holmes R; Williamson C; Peters J; Denny P; Wells C A comprehensive transcript map of the mouse Gnas imprinted complex | 1 | 3 |
| 78 | 1 | 87 | 48 2003 GENOME RESEARCH 13(6B):1416-1429
Tajul-Arifin K; Teasdale R; Ravasi T; Hume DA; Mattick JS Identification and analysis of chromodomain-containing proteins encoded in the mouse transcriptome | 0 | 0 |
| 79 | 1 | 38 | 49 2003 GENOME RESEARCH 13(6B):1430-1442
Ravasi T; Huber T; Zavolan M; Forrest A; Gaasterland T; Grimmond S; Hume DA Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome | 0 | 4 |
| 80 | 1 | 41 | 50 2003 GENOME RESEARCH 13(6B):1443-1454
Forrest ARR; Ravasi T; Taylor D; Huber T; Hume DA; Grimmond S Phosphoregulators: Protein kinases and protein phosphatases of mouse | 0 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 81 | 1 | 37 | 51 2003 GENOME RESEARCH 13(6B):1455-1465
Miki H; Setou M; Hirokawa N Kinesin superfamily proteins (KIFs) in the mouse transcriptome | 1 | 3 |
| 82 | 1 | 62 | 52 2003 GENOME RESEARCH 13(6B):1466-1477
Kawasawa Y; McKenzie LM; Hill DP; Bono H; Yanagisawa M G protein-coupled receptor genes in the FANTOM2 database | 0 | 1 |
| 83 | 1 | 10 | 53 2003 GENOME RESEARCH 13(6B):1478-1487
Furuno M; Kasukawa T; Saito R; Adachi J; Suzuki H; Baldarelli R; Hayashizaki Y; Okazaki Y CDS annotation in full-length cDNA sequence | 1 | 3 |
| 84 | 1 | 14 | 54 2003 GENOME RESEARCH 13(6B):1488-1495
Kawai J; Hayashizaki Y DNA book | 2 | 3 |
| 85 | 1 | 14 | 55 2003 GENOME RESEARCH 13(6B):1496-1500
Schriml LM; Hill DP; Blake JA; Bono H; Wynshaw-Boris A; Pavan WJ; Ring BZ; Beisel K; Setou M; Okazaki Y Human disease genes and their cloned mouse orthologs: Exploration of the FANTOM2 cDNA sequence data set | 2 | 3 |
| 86 | 1 | 15 | 56 2003 GENOME RESEARCH 13(6B):1501-1504
Lenhard B; Wahlestedt C; Wasserman WW GeneLynx Mouse: Integrated portal to the mouse genome | 0 | 0 |
| 87 | 1 | 18 | 57 2003 GENOME RESEARCH 13(6B):1505-1519
Baldarelli RM; Hill DP; Blake JA; Adachi J; Furuno M; Bradt D; Corbani LE; Cousins S; Frazer KS; Qi D; Yang LL; Ramachandran S; Reed D; Zhu YX; Kasukawa T; Ringwald M; King BL; Maltais LJ; McKenzie LM; Schriml LM; Maglott D; Church DM; Pruitt K; Eppig JT; Richardson JE; Kadin JA; Bult CJ Connecting sequence and biology in the laboratory mouse | 3 | 6 |
| 88 | 1 | 35 | 58 2003 GENOME RESEARCH 13(6B):1520-1533
Nagashima T; Silva DG; Petrovsky N; Socha LA; Suzuki H; Saito R; Kasukawa T; Kurochkin IV; Konagaya A; Schonbach C Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS | 2 | 2 |
| 89 | 1 | 34 | 59 2003 GENOME RESEARCH 13(6B):1534-1541
Suzuki H; Saito R; Kanamori M; Kai C; Schonbach C; Nagashima T; Hosaka J; Hayashizaki Y The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer | 1 | 1 |
| 90 | 1 | 20 | 60 2003 GENOME RESEARCH 13(6B):1542-1551
Kasukawa T; Furuno M; Nikaido I; Bono H; Hume DA; Bult C; Hill DP; Baldarelli R; Gough J; Kanapin A; Matsuda H; Schriml LM; Hayashizaki Y; Okazaki Y; Quackenbush J Development and evaluation of an automated annotation pipeline and cDNA annotation system | 3 | 6 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 91 | 1 | 4 | 61 2003 GENOME RESEARCH 13(6B):1552-1553
Batalov S; Fletcher CF Exon structure analysis, ortholog identification, and SNP candidate screening by mapping mouse RIKEN sequences to multiple genome assemblies | 0 | 0 |
| 92 | 1 | 2 | 62 2003 GENOME RESEARCH 13(6B):1554-1555
Kiyosawa H; Kawashima T; Hasegawa Y; Yamanaka I; Sakai K; Kondo S; Hayashizaki Y Introduction of RIKEN-GenoMapper, mapping viewer system | 1 | 1 |
| 93 | 1 | 2 | 63 2003 GENOME RESEARCH 13(6B):1556-1557
Batalov S; Su AI; Ching KA; Fletcher CF Functional annotation of RIKEN mouse cDNA clones using GNF expression atlas | 0 | 0 |
| 94 | 1 | 26 | 64 2003 GENOME RESEARCH 13(7):1631-1637
Sorek R; Ast G Intronic sequences flanking alternatively spliced exons are conserved between human and mouse | 0 | 7 |
| 95 | 1 | 67 | 65 2003 GENOME RESEARCH 13(12):2621-2636
Xie T; Rowen L; Aguado B; Ahearn ME; Madan A; Qin SZ; Campbell RD; Hood L Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse | 0 | 2 |
| 96 | 1 | 53 | 66 2003 GENOME RESEARCH 13(12):2747-2753
Clark MS; Edwards YJK; Peterson D; Clifton SW; Thompson AJ; Sasaki M; Suzuki Y; Kikuchi K; Watabe S; Kawakami K; Sugano S; Elgar G; Johnson SL Fugu ESTs: New resources for transcription analysis and genome annotation | 0 | 0 |
| 97 | 1 | 29 | 67 2003 HERALD OF THE RUSSIAN ACADEMY OF SCIENCES 73(3):262-269
Sverdlov ED DNA in a cell: From a molecular icon to the problem of "what is life?" | 0 | 0 |
| 98 | 1 | 8 | 68 2003 HEREDITY 90(2):115-116
Hughes AL Comparative genomics - Genomes of mice and men | 0 | 0 |
| 99 | 1 | 76 | 69 2003 HUMAN MOLECULAR GENETICS 12(11):1313-1320
Nurtdinov RN; Artamonova II; Mironov AA; Gelfand MS Low conservation of alternative splicing patterns in the human and mouse genomes | 1 | 12 |
| 100 | 1 | 28 | 70 2003 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 12(3):391-397
Ahn SK A bioinformatics-based approach for the prediction and identification of novel proteins potentially involved in phosphorylation signalling pathways | 0 | 0 |
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