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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y. Okazaki et al. NATURE 420 (6915): 563-573 DEC 5 2002 and the citing papers. |
Nodes: 159
Authors: 1113,
Journals: 70,
Outer References: 5312
Collection span: 2002 - 2004
View: Overview. Sorted by NCR.
Page 1: 1 2
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
|---|---|---|---|---|---|
| 1 | 1 | 283 | 71 2003 INTERNATIONAL REVIEW OF CYTOLOGY - A SURVEY OF CELL BIOLOGY, VOL 231 231():197-258
Szymaski M; Barciszewski J Regulation by RNA | 0 | 0 |
| 2 | 4 | 196 | 131 2004 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37(1):93-106
Castrillo JO; Oliver SG Yeast as a touchstone in post-genomic research: Strategies for integrative analysis in functional genomics | 0 | 0 |
| 3 | 1 | 184 | 132 2004 JOURNAL OF BIOMEDICAL SCIENCE 11(3):278-294
Zheng ZM Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression | 0 | 0 |
| 4 | 1 | 184 | 136 2004 MOLECULAR AND CELLULAR ENDOCRINOLOGY 218(1-2):7-20
Mindnich R; Moller G; Adamski J The role of 17 beta-hydroxy steroid dehydrogenases | 0 | 0 |
| 5 | 1 | 176 | 3 2003 ADVANCED DRUG DELIVERY REVIEWS 55(8):1081-1112
Stone LS; Vulchanova L The pain of antisense: in vivo application of antisense oligonucleotides for functional genomics in pain and analgesia | 0 | 0 |
| 6 | 1 | 132 | 11 2003 BIOPOLYMERS 70(1):4-18
Hermann T Chemical and functional diversity of small molecule ligands for RNA | 0 | 1 |
| 7 | 1 | 113 | 38 2003 GENOME RESEARCH 13(6B):1324-1334
Kiyosawa H; Yamanaka I; Osato N; Kondo S; Hayashizaki Y Antisense transcripts with FANTOM2 clone set and their implications for gene regulation | 6 | 13 |
| 8 | 1 | 109 | 138 2004 MOLECULAR PHARMACOLOGY 65(2):267-278
Zoraghi R; Corbin JD; Francis SH Properties and functions of GAF domains in cyclic nucleotide phosphodiesterases and other proteins | 0 | 0 |
| 9 | 1 | 104 | 10 2003 BIOESSAYS 25(10):930-939
Mattick JS Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms | 2 | 7 |
| 10 | 1 | 103 | 101 2003 REPRODUCTION 125(4):457-468
Stanton JAL; Macgregor AB; Green DPL Gene expression in the mouse preimplantation embryo | 0 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 11 | 1 | 98 | 142 2004 NATURE REVIEWS GENETICS 5(4):276-287
Wasserman WW; Sandelin A Applied bioinformatics for the identification of regulatory elements | 0 | 1 |
| 12 | 1 | 97 | 86 2003 NATURE REVIEWS IMMUNOLOGY 3(3):243-252
Rogner UC; Avner P Congenic mice: Cutting tools for complex immune disorders | 0 | 6 |
| 13 | 1 | 87 | 48 2003 GENOME RESEARCH 13(6B):1416-1429
Tajul-Arifin K; Teasdale R; Ravasi T; Hume DA; Mattick JS Identification and analysis of chromodomain-containing proteins encoded in the mouse transcriptome | 0 | 0 |
| 14 | 3 | 87 | 127 2004 GENOMICS 83(6):1012-1023
Beisel KW; Shiraki T; Morris KA; Pompeia C; Kachar B; Arakawa T; Bono H; Kawai J; Hayashizaki Y; Carninci P Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library | 0 | 0 |
| 15 | 1 | 86 | 73 2003 JOURNAL OF BIOCHEMISTRY 133(6):699-711
Kaneko-Ishino T; Kohda T; Ishino F The regulation and biological significance of genomic imprinting in mammals | 0 | 2 |
| 16 | 8 | 80 | 143 2004 NATURE REVIEWS GENETICS 5(4):316-323
Mattick JS RNA regulation: a new genetics? | 0 | 1 |
| 17 | 1 | 78 | 28 2003 GENETICS 163(4):1227-1235
Paigen K One hundred years of mouse genetics: An intellectual history. II. The molecular revolution (1981-2002) (Reprinted from The New Yorker, 2003) | 0 | 3 |
| 18 | 4 | 78 | 155 2004 PROTEOMICS 4(6):1712-1726
Southan C Has the yo-yo stopped? - An assessment of human protein-coding gene number | 0 | 0 |
| 19 | 1 | 77 | 4 2003 ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH 27(5):880-888
Schumann G; Spanagel R; Mann K Candidate genes for alcohol dependence: Animal studies | 0 | 2 |
| 20 | 1 | 76 | 69 2003 HUMAN MOLECULAR GENETICS 12(11):1313-1320
Nurtdinov RN; Artamonova II; Mironov AA; Gelfand MS Low conservation of alternative splicing patterns in the human and mouse genomes | 1 | 12 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 21 | 1 | 74 | 92 2003 PHYSIOLOGICAL GENOMICS 16(1):90-98
Schwartz F; Duka A; Triantafyllidi E; Johns C; Duka I; Cui J; Gavras H Serial analysis of gene expression in mouse kidney following angiotensin II administration | 0 | 0 |
| 22 | 2 | 74 | 117 2004 GENE 325():63-78
Retta SF; Avolio M; Francalanci F; Procida S; Balzac F; Degani S; Tarone G; Silengo L Identification of Krit1B: a novel alternative splicing isoform of cerebral cavernous malformation gene-1 | 0 | 0 |
| 23 | 2 | 73 | 121 2004 GENOME BIOLOGY 5(4):-
Shabalina SA; Spiridonov NA The mammalian transcriptome and the function of non-coding DNA sequences | 0 | 0 |
| 24 | 1 | 72 | 27 2003 GENES & DEVELOPMENT 17(8):991-1008
Lim LP; Lau NC; Weinstein EG; Abdelhakim A; Yekta S; Rhoades MW; Burge CB; Bartel DP The microRNAs of Caenorhabditis elegans | 0 | 51 |
| 25 | 1 | 70 | 19 2003 CYTOGENETIC AND GENOME RESEARCH 103(3-4):210-216
Elliott D Pathways of post-transcriptional gene regulation in mammalian germ cell development | 0 | 0 |
| 26 | 1 | 69 | 128 2004 IMMUNITY 20(6):669-679
Vinuesa CG; Goodnow CC Illuminating autoimmune regulators through controlled variation of the mouse genome sequence | 0 | 0 |
| 27 | 2 | 67 | 31 2003 GENOME BIOLOGY 4(12):-
Abbott DE; Pritchard C; Clegg NJ; Ferguson C; Dumpit R; Sikes RA; Nelson PS Expressed sequence tag profiling identifies developmental and anatomic partitioning of gene expression in the mouse prostate | 0 | 0 |
| 28 | 1 | 67 | 65 2003 GENOME RESEARCH 13(12):2621-2636
Xie T; Rowen L; Aguado B; Ahearn ME; Madan A; Qin SZ; Campbell RD; Hood L Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse | 0 | 2 |
| 29 | 1 | 67 | 158 2004 TRENDS IN BIOTECHNOLOGY 22(1):23-30
Ruan YJ; Le Ber P; Ng HH; Liu ET Interrogating the transcriptome | 0 | 1 |
| 30 | 2 | 66 | 129 2004 INTERNAL MEDICINE JOURNAL 34(3):79-90
Kiyosawa H; Kawashima T; Silva D; Petrovsky N; Hasegawa Y; Sakai K; Hayashizaki Y Systematic genome-wide approach to positional candidate cloning for identification of novel human disease genes | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 31 | 1 | 65 | 76 2003 MAMMALIAN GENOME 14(8):565-579
Tuggle CK; Green JA; Fitzsimmons C; Woods R; Prather RS; Malchenko S; Soares MB; Kucaba T; Crouch K; Smith C; Tack D; Robinson N; O'Leary B; Scheetz T; Casavant T; Pomp D; Edeal JB; Zhang YD; Rothschild MF; Garwood K; Beavis W EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human | 1 | 3 |
| 32 | 1 | 64 | 33 2003 GENOME RESEARCH 13(6B):1273-1289
Carninci P; Waki K; Shiraki T; Konno H; Shibata K; Itoh M; Aizawa K; Arakawa T; Ishii Y; Sasaki D; Bono H; Kondo S; Sugahara Y; Saito R; Osato N; Fukuda S; Sato K; Watahiki A; Hirozane-Kishikawa T; Nakamura M; Shibata Y; Yasunishi A; Kikuchi N; Yoshiki A; Kusakabe M; Gustincich S; Beisel K; Pavan W; Aidinis V; Nakagawara A; Held WA; Iwata H; Kono T; Nakauchi H; Lyons P; Wells C; Hume DA; Fagiolini M; Hensch TK; Brinkmeier M; Camper S; Hirota J; Mombaerts P; Muramatsu M; Okazaki Y; Kawai J; Hayashizaki Y Targeting a complex transcriptome: The construction of the mouse full-length cDNA encyclopedia | 6 | 11 |
| 33 | 1 | 62 | 52 2003 GENOME RESEARCH 13(6B):1466-1477
Kawasawa Y; McKenzie LM; Hill DP; Bono H; Yanagisawa M G protein-coupled receptor genes in the FANTOM2 database | 0 | 1 |
| 34 | 2 | 62 | 74 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(50):50691-50701
Futaki S; Hayashi Y; Yamashita M; Yagi K; Bono H; Hayashizaki Y; Okazaki Y; Sekiguchi K Molecular basis of constitutive production of basement membrane components - Gene expression profiles of Engelbreth-Holm-Swarm tumor and F9 embryonal carcinoma cells | 0 | 1 |
| 35 | 2 | 58 | 156 2004 REPRODUCTION FERTILITY AND DEVELOPMENT 16(1-2):79-85
Ko MSH Embryogenomics of pre-implantation mammalian development: current status | 0 | 0 |
| 36 | 1 | 57 | 113 2004 CELL RESEARCH 14(1):1-7
Hennig W The revolution of the biology of the genome | 0 | 0 |
| 37 | 1 | 57 | 135 2004 MOLECULAR AND CELLULAR BIOLOGY 24(12):5620-5634
Nishant KT; Ravishankar H; Rao MRS Characterization of a mouse recombination hot spot locus encoding a novel non-protein-coding RNA | 0 | 0 |
| 38 | 1 | 56 | 17 2003 CURRENT OPINION IN CELL BIOLOGY 15(3):281-289
Andersen AA; Panning B Epigenetic gene regulation by noncoding RNAs | 1 | 10 |
| 39 | 1 | 55 | 36 2003 GENOME RESEARCH 13(6B):1307-1317
Brusic V; Pillai RS; Silva DG; Petrovsky N; Schonbach C Cytokine-related genes identified from the RIKEN full-length mouse cDNA data set | 0 | 0 |
| 40 | 1 | 53 | 13 2003 CELLULAR AND MOLECULAR LIFE SCIENCES 60(5):854-861
Good L Translation repression by antisense sequences | 0 | 2 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 41 | 1 | 53 | 66 2003 GENOME RESEARCH 13(12):2747-2753
Clark MS; Edwards YJK; Peterson D; Clifton SW; Thompson AJ; Sasaki M; Suzuki Y; Kikuchi K; Watabe S; Kawakami K; Sugano S; Elgar G; Johnson SL Fugu ESTs: New resources for transcription analysis and genome annotation | 0 | 0 |
| 42 | 2 | 53 | 133 2004 JOURNAL OF NEUROBIOLOGY 58(2):201-206
Setou M; Hayasaka T; Yao I Axonal transport versus dendritic transport | 0 | 0 |
| 43 | 0 | 52 | 2 2002 NATURE 420(6915):563-573
Okazaki Y; Furuno M; Kasukawa T; Adachi J; Bono H; Kondo S; Nikaido I; Osato N; Saito R; Suzuki H; Yamanaka I; Kiyosawa H; Yagi K; Tomaru Y; Hasegawa Y; Nogami A; Schonbach C; Gojobori T; Baldarelli R; Hill DP; Bult C; Hume DA; Quackenbush J; Schriml LM; Kanapin A; Matsuda H; Batalov S; Beisel KW; Blake JA; Bradt D; Brusic V; Chothia C; Corbani LE; Cousins S; Dalla E; Dragani TA; Fletcher CF; Forrest A; Frazer KS; Gaasterland T; Gariboldi M; Gissi C; Godzik A; Gough J; Grimmond S; Gustincich S; Hirokawa N; Jackson IJ; Jarvis ED; Kanai A; Kawaji H; Kawasawa Y; Kedzierski RM; King BL; Konagaya A; Kurochkin IV; Lee Y; Lenhard B; Lyons PA; Maglott DR; Maltais L; Marchionni L; McKenzie L; Miki H; Nagashima T; Numata K; Okido T; Pavan WJ; Pertea G; Pesole G; Petrovsky N; Pillai R; Pontius JU; Qi D; Ramachandran S; Ravasi T; Reed JC; Reed DJ; Reid J; Ring BZ; Ringwald M; Sandelin A; Schneider C; Semple CAM; Setou M; Shimada K; Sultana R; Takenaka Y; Taylor MS; Teasdale RD; Tomita M; Verardo R; Wagner L; Wahlestedt C; Wang Y; Watanabe Y; Wells C; Wilming LG; Wynshaw-Boris A; Yanagisawa M; Yang I; Yang L; Yuan Z; Zavolan M; Zhu Y; Zimmer A; Carninci P; Hayatsu N; Hirozane-Kishikawa T; Konno H; Nakamura M; Sakazume N; Sato K; Shiraki T; Waki K; Kawai J; Aizawa K; Arakawa T; Fukuda S; Hara A; Hashizume W; Imotani K; Ishii Y; Itoh M; Kagawa I; Miyazaki A; Sakai K; Sasaki D; Shibata K; Shinagawa A; Yasunishi A; Yoshino M; Waterston R; Lander ES; Rogers J; Birney E; Hayashizaki Y Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs | 160 | 158 |
| 44 | 1 | 52 | 78 2003 MOLECULAR & CELLULAR PROTEOMICS 2(2):96-106
Kislinger T; Rahman K; Radulovic D; Cox B; Rossant J; Emili A PRISM, a generic large scale proteomic investigation strategy for mammals | 0 | 11 |
| 45 | 5 | 52 | 120 2004 GENOME BIOLOGY 5(1):-
Osato N; Yamada H; Satoh K; Ooka H; Yamamoto M; Suzuki K; Kawai J; Carninci P; Ohtomo Y; Murakami K; Matsubara K; Kikuchi S; Hayashizaki Y Antisense transcripts with rice full-length cDNAs | 0 | 0 |
| 46 | 1 | 51 | 34 2003 GENOME RESEARCH 13(6B):1290-1300
Zavolan M; Kondo S; Schonbach C; Adachi J; Hume DA; Hayashizaki Y; Gaasterland T Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome | 3 | 9 |
| 47 | 1 | 50 | 139 2004 NATURE 429(6989):268-274
Han JS; Szak ST; Boeke JD Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes | 0 | 2 |
| 48 | 1 | 49 | 112 2004 CELL 116(4):499-509
Cawley S; Bekiranov S; Ng HH; Kapranov P; Sekinger EA; Kampa D; Piccolboni A; Sementchenko V; Cheng J; Williams AJ; Wheeler R; Wong B; Drenkow J; Yamanaka M; Patel S; Brubaker S; Tammana H; Helt G; Struhl K; Gingeras TR Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs | 1 | 7 |
| 49 | 1 | 48 | 96 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(14):8502-8507
Feng XR; Carlton JM; Joy DA; Mu JB; Furuya T; Suh BB; Wang YF; Barnwell JW; Su XZ Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax | 0 | 3 |
| 50 | 1 | 47 | 94 2003 PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES 79(2):34-50
Yoshida T; Yoshimura K Outline of disease gene hunting approaches in the Millennium Genome Project of Japan | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 51 | 1 | 47 | 108 2004 BIOCHEMICAL JOURNAL 379():385-393
Kuhn M; Ng CKD; Su YH; Kilic A; Mitko D; Bien-Ly N; Komuves LG; Yang RB Identification of an orphan guanylate cyclase receptor selectively expressed in mouse testis | 0 | 0 |
| 52 | 1 | 46 | 20 2003 DEVELOPMENT GENES AND EVOLUTION 213(5-6):222-234
Wada S; Tokuoka M; Shoguchi E; Kobayashi K; Di Gregorio A; Spagnuolo A; Branno M; Kohara Y; Rokhsar D; Levine M; Saiga H; Satoh N; Satou Y A genomewide survey of developmentally relevant genes in Ciona intestinalis - II. Genes for homeobox transcription factors | 0 | 5 |
| 53 | 1 | 44 | 72 2003 JOURNAL OF APPLIED PHYSIOLOGY 94(4):1650-1659
Svenson KL; Bogue MA; Peters LL Genetic models in applied physiology - Invited review: Identifying new mouse models of cardiovascular disease: a review of high-throughput screens of mutagenized and inbred strains | 0 | 3 |
| 54 | 3 | 44 | 114 2004 CURRENT OPINION IN CHEMICAL BIOLOGY 8(1):20-25
Rual JF; Hill DE; Vidal M ORFeome projects: gateway between genomics and omics | 0 | 0 |
| 55 | 1 | 43 | 35 2003 GENOME RESEARCH 13(6B):1301-1306
Numata K; Kanai A; Saito R; Kondo S; Adachi J; Wilming LG; Hume DA; Hayashizaki Y; Tomita M Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection | 3 | 7 |
| 56 | 1 | 42 | 98 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12195-12200
Bell SM; Schreiner CM; Waclaw RR; Campbell K; Potter SS; Scott WJ Sp8 is crucial for limb outgrowth and neuropore closure | 0 | 2 |
| 57 | 3 | 42 | 157 2004 TRENDS IN BIOCHEMICAL SCIENCES 29(2):88-94
Lavorgna G; Dahary D; Lehner B; Sorek R; Sanderson CM; Casari G In search of antisense | 0 | 0 |
| 58 | 1 | 41 | 29 2003 GENETICS 165(4):1823-1830
Noor MAF; Michalak P; Donze D Characterization of a male-predominant antisense transcript underexpressed in hybrids of Drosophila pseudoobscura and D-persimilis | 0 | 0 |
| 59 | 1 | 41 | 50 2003 GENOME RESEARCH 13(6B):1443-1454
Forrest ARR; Ravasi T; Taylor D; Huber T; Hume DA; Grimmond S Phosphoregulators: Protein kinases and protein phosphatases of mouse | 0 | 1 |
| 60 | 1 | 41 | 93 2003 PLOS BIOLOGY 1(3):410-419
Sharov AA; Piao YL; Matoba R; Dudekula DB; Qian Y; Vanburen V; Falco G; Martin PR; Stagg CA; Bassey UC; Wang YX; Carter MG; Hamatani T; Aiba K; Akutsu H; Sharova L; Tanaka TS; Kimber WL; Yoshikawa T; Jaradat SA; Pantano S; Nagaraja R; Boheler KR; Taub D; Hodes RJ; Longo DL; Schlessinger D; Keller J; Klotz E; Kelsoe G; Umezawa A; Vescovi AL; Rossant J; Kunath T; Hogan BLM; Curci A; D'Urso M; Kelso J; Hide W; Ko MSH Transcriptome analysis of mouse stem cells and early embryos | 0 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 61 | 2 | 41 | 102 2003 SCIENCE 302(5646):842-846
Yamada K; Lim J; Dale JM; Chen HM; Shinn P; Palm CJ; Southwick AM; Wu HC; Kim C; Nguyen M; Pham P; Cheuk R; Karlin-Newmann G; Liu SX; Lam B; Sakano H; Wu T; Yu GX; Miranda M; Quach HL; Tripp M; Chang CH; Lee JM; Toriumi M; Chan MMH; Tang CC; Onodera CS; Deng JM; Akiyama K; Ansari Y; Arakawa T; Banh J; Banno F; Bowser L; Brooks S; Carninci P; Chao QM; Choy N; Enju A; Goldsmith AD; Gurjal M; Hansen NF; Hayashizaki Y; Johnson-Hopson C; Hsuan VW; Iida K; Karnes M; Khan S; Koesema E; Ishida J; Jiang PX; Jones T; Kawai J; Kamiya A; Meyers C; Nakajima M; Narusaka M; Seki M; Sakurai T; Satou M; Tamse R; Vaysberg M; Wallender EK; Wong C; Yamamura Y; Yuan SL; Shinozaki K; Davis RW; Theologis A; Ecker JR Empirical analysis of transcriptional activity in the Arabidopsis genome | 3 | 17 |
| 62 | 1 | 40 | 14 2003 COMPTES RENDUS BIOLOGIES 326(10-11):931-940
Carter MG; Piao YL; Dudekula DB; Qian Y; VanBuren V; Sharov AA; Tanaka TS; Martin PR; Bassey UC; Stagg CA; Aiba K; Hamatani T; Matoba R; Kargul GJ; Ko MSH The NIA cDNA Project in mouse stem cells and early embryos | 0 | 0 |
| 63 | 1 | 40 | 122 2004 GENOME RESEARCH 14(1):79-89
Zhang T; Haws P; Wu Q Multiple variable first exons: A mechanism for cell-and tissue-specific gene regulation | 0 | 0 |
| 64 | 1 | 39 | 18 2003 CURRENT OPINION IN LIPIDOLOGY 14(2):115-119
Mooser V; Ordovas JM 'Omic' approaches and lipid metabolism: are these new technologies holding their promises? | 0 | 2 |
| 65 | 4 | 39 | 85 2003 NATURE REVIEWS GENETICS 4(9):741-749
Wang J; Li ST; Zhang Y; Zheng HK; Xu Z; Ye J; Yu J; Wong GKS Vertebrate gene predictions and the problem of large genes | 0 | 0 |
| 66 | 1 | 39 | 95 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(3):1140-1145
Guigo R; Dermitzakis ET; Agarwal P; Ponting CP; Parra G; Reymond A; Abril JF; Keibler E; Lyle R; Ucla C; Antonarakis SE; Brent MR Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes | 7 | 17 |
| 67 | 6 | 39 | 159 2004 TRENDS IN BIOTECHNOLOGY 22(4):161-167
Hayashizaki Y; Kanamori M Dynamic transcriptome of mice | 0 | 0 |
| 68 | 1 | 38 | 49 2003 GENOME RESEARCH 13(6B):1430-1442
Ravasi T; Huber T; Zavolan M; Forrest A; Gaasterland T; Grimmond S; Hume DA Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome | 0 | 4 |
| 69 | 1 | 38 | 107 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 317(4):1052-1060
Vierstraete E; Verleyen P; Sas F; Van den Bergh G; De Loof A; Arckens L; Schoofs L The instantly released Drosophila immune proteome is infection-specific | 0 | 0 |
| 70 | 1 | 38 | 119 2004 GENOME BIOLOGY 5(1):-
Hurowitz EH; Brown PO Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 71 | 1 | 37 | 51 2003 GENOME RESEARCH 13(6B):1455-1465
Miki H; Setou M; Hirokawa N Kinesin superfamily proteins (KIFs) in the mouse transcriptome | 1 | 3 |
| 72 | 1 | 37 | 88 2003 NUCLEIC ACIDS RESEARCH 31(13):3554-3559
Halees AS; Leyfer D; Weng ZP PromoSer: a large-scale mammalian promoter and transcription start site identification service | 0 | 0 |
| 73 | 1 | 36 | 7 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 305(4):840-845
Wang LJ; Urbauer RJB; Urbauer JL; Benson DR House fly cytochrome b(5) exhibits kinetically trapped hemin and selectivity in hemin binding | 0 | 1 |
| 74 | 1 | 36 | 43 2003 GENOME RESEARCH 13(6B):1366-1375
Forrest ARR; Taylor D; Grimmond S Exploration of the cell-cycle genes found within the RIKEN FANTOM2 data set | 0 | 0 |
| 75 | 1 | 36 | 91 2003 ONCOGENE 22(39):8031-8041
Ji P; Diederichs S; Wang WB; Boing S; Metzger R; Schneider PM; Tidow N; Brandt B; Buerger H; Bulk E; Thomas M; Berdel WE; Serve H; Muller-Tidow C MALAT-1, a novel noncoding RNA, and thymosin beta 4 predict metastasis and survival in early-stage non-small cell lung cancer | 0 | 0 |
| 76 | 1 | 36 | 115 2004 DEVELOPMENTAL DYNAMICS 229(2):373-379
Hou J; Yashiro K; Okazaki Y; Saijoh Y; Hayashizaki Y; Hamada H Identification of a novel left-right asymmetrically expressed gene in the mouse belonging to the BPI/PLUNC superfamily | 0 | 0 |
| 77 | 2 | 36 | 152 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(16):6062-6067
Su AI; Wiltshire T; Batalov S; Lapp H; Ching KA; Block D; Zhang J; Soden R; Hayakawa M; Kreiman G; Cooke MP; Walker JR; Hogenesch JB A gene atlas of the mouse and human protein-encoding transcriptomes | 0 | 1 |
| 78 | 1 | 35 | 23 2003 GENE 310():17-28
Shimizu H; Taniguchi H; Hippo Y; Hayashizaki Y; Aburatani H; Ishikawa T Characterization of the mouse Abcc12 gene and its transcript encoding an ATP-binding cassette transporter, an orthologue of human ABCC12 | 0 | 1 |
| 79 | 1 | 35 | 58 2003 GENOME RESEARCH 13(6B):1520-1533
Nagashima T; Silva DG; Petrovsky N; Socha LA; Suzuki H; Saito R; Kasukawa T; Kurochkin IV; Konagaya A; Schonbach C Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS | 2 | 2 |
| 80 | 1 | 35 | 99 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12201-12206
Schultz N; Hamra FK; Garbers DL A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets | 0 | 10 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 81 | 2 | 34 | 9 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 310(2):667-674
Tomaru Y; Kondo SJ; Suzuki M; Hayashizaki Y A comprehensive search for HNF-3 alpha-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis | 0 | 2 |
| 82 | 1 | 34 | 59 2003 GENOME RESEARCH 13(6B):1534-1541
Suzuki H; Saito R; Kanamori M; Kai C; Schonbach C; Nagashima T; Hosaka J; Hayashizaki Y The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer | 1 | 1 |
| 83 | 1 | 34 | 90 2003 NUCLEIC ACIDS RESEARCH 31(21):6096-6103
de Bono B; Chothia C Exegesis: a procedure to improve gene predictions and its use to find immunoglobulin superfamily proteins in the human and mouse genomes | 0 | 0 |
| 84 | 2 | 34 | 124 2004 GENOME RESEARCH 14(3):331-342
Kampa D; Cheng J; Kapranov P; Yamanaka M; Brubaker S; Cawley S; Drenkow J; Piccolboni A; Bekiranov S; Helt G; Tammana H; Gingeras TR Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 | 1 | 2 |
| 85 | 1 | 33 | 137 2004 MOLECULAR CELL 14(5):647-656
Callen BP; Shearwin KE; Egan JB Transcriptional interference between convergent promoters caused by elongation over the promoter | 0 | 0 |
| 86 | 1 | 32 | 46 2003 GENOME RESEARCH 13(6B):1402-1409
Nikaido L; Saito C; Mizuno Y; Meguro M; Bono H; Kadomura M; Kono T; Morris GA; Lyons PA; Oshimura M; Hayashizaki Y; Okazaki Y Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling | 0 | 0 |
| 87 | 2 | 32 | 104 2004 ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 425(2):221-232
Lo PK; Wang FF 5 '-Heterogeneity of mouse Dda3 transcripts is attributed to differential initiation of transcription and alternative splicing | 0 | 0 |
| 88 | 2 | 32 | 125 2004 GENOME RESEARCH 14(3):463-471
Porcel BM; Delfour O; Castelli V; De Berardinis V; Friedlander L; Cruaud C; Ureta-Vidal A; Scarpelli C; Wincker P; Schachter V; Saurin W; Gyapay G; Salanoubat M; Weissenbach J Numerous novel annotations of the human genome sequence supported by a 5 '-end-enriched cDNA collection | 0 | 0 |
| 89 | 1 | 32 | 134 2004 MOLECULAR AND CELLULAR BIOLOGY 24(9):3794-3803
Schlamp CL; Thliveris AT; Li Y; Kohl LP; Knop C; Dietz JA; Larsen IV; Imesch P; Pinto LH; Nickells RW Insertion of the beta Geo promoter trap into the Fem1c gene of ROSA3 mice | 0 | 0 |
| 90 | 1 | 30 | 6 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 301(3):633-640
Saito R; Suzuki H; Hayashizaki Y Global insights into protein complexes through integrated analysis of the reliable interactome and knockout lethality | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 91 | 1 | 30 | 39 2003 GENOME RESEARCH 13(6B):1335-1344
Kanapin A; Batalov S; Davis MJ; Gough J; Grimmond S; Kawaji H; Magrane M; Matsuda H; Schonbach C; Teasdale RD; Yuan Z Mouse proteome analysis | 1 | 5 |
| 92 | 1 | 30 | 80 2003 NATURE 425(6953):81-86
Kile BT; Hentges KE; Clark AT; Nakamura H; Salinger AP; Liu B; Box N; Stockton DW; Johnson RL; Behringer RR; Bradley A; Justice MJ Functional genetic analysis of mouse chromosome 11 | 0 | 14 |
| 93 | 1 | 30 | 83 2003 NATURE GENETICS 34(1):35-41
Reboul J; Vaglio P; Rual JF; Lamesch P; Martinez M; Armstrong CM; Li SM; Jacotot L; Bertin N; Janky R; Moore T; Hudson JR; Hartley JL; Brasch MA; Vandenhaute J; Boulton S; Endress GA; Jenna S; Chevet E; Papasotiropoulos V; Tolias PP; Ptacek J; Snyder M; Huang R; Chance MR; Lee HM; Doucette-Stamm L; Hill DE; Vidal M C-elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression | 3 | 35 |
| 94 | 1 | 30 | 105 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 314(4):1086-1092
Nakane T; Satoh T; Inada Y; Nakayama J; Itoh F; Chiba S Molecular cloning and expression of HRLRRP, a novel heart-restricted leucine-rich repeat protein | 0 | 0 |
| 95 | 1 | 29 | 24 2003 GENE 318():137-147
Gardiner K; Fortna A; Bechtel L; Davisson MT Mouse models of Down syndrome: how useful can they be? Comparison of the gene content of human chromosome 21 with orthologous mouse genomic regions | 0 | 1 |
| 96 | 1 | 29 | 45 2003 GENOME RESEARCH 13(6B):1395-1401
Gustincich S; Batalov S; Beisel KW; Bono H; Carninci P; Fletcher CF; Grimmond S; Hirokawa N; Jarvis ED; Jegla T; Kawasawa Y; LeMieux J; Miki H; Raviola E; Teasdale RD; Tominaga N; Yagi K; Zimmer A; Hayashizaki Y; Okazaki Y Analysis of the mouse transcriptome for genes involved in the function of the nervous system | 0 | 3 |
| 97 | 1 | 29 | 67 2003 HERALD OF THE RUSSIAN ACADEMY OF SCIENCES 73(3):262-269
Sverdlov ED DNA in a cell: From a molecular icon to the problem of "what is life?" | 0 | 0 |
| 98 | 1 | 29 | 97 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12147-12152
Iourgenko V; Zhang WJ; Mickanin C; Daly I; Jiang C; Hexham JM; Orth AP; Miraglia L; Meltzer J; Garza D; Chirn GW; McWhinnie E; Cohen D; Skelton J; Terry R; Yu Y; Bodian D; Buxton FP; Zhu JA; Song CZ; Labow MA Identification of a family of cAMP response element-binding protein coactivators by genome-scale functional analysis in mammalian cells | 0 | 2 |
| 99 | 1 | 29 | 140 2004 NATURE GENETICS 36(1):40-45
Ota T; Suzuki Y; Nishikawa T; Otsuki T; Sugiyama T; Irie R; Wakamatsu A; Hayashi K; Sato H; Nagai K; Kimura K; Makita H; Sekine M; Obayashi M; Nishi T; Shibahara T; Tanaka T; Ishii S; Yamamoto J; Saito K; Kawai Y; Isono Y; Nakamura Y; Nagahari K; Murakami K; Yasuda T; Iwayanagi T; Wagatsuma M; Shiratori A; Sudo H; Hosoiri T; Kaku Y; Kodaira H; Kondo H; Sugawara M; Takahashi M; Kanda K; Yokoi T; Furuya T; Kikkawa E; Omura Y; Abe K; Kamihara K; Katsuta N; Sato K; Tanikawa M; Yamazaki M; Ninomiya K; Ishibashi T; Yamashita H; Murakawa K; Fujimori K; Tanai H; Kimata M; Watanabe M; Hiraoka S; Chiba Y; Ishida S; Ono Y; Takiguchi S; Watanabe S; Yosida M; Hotuta T; Kusano J; Kanehori K; Takahashi-Fujii A; Hara H; Tanase T; Nomura Y; Togiya S; Komai F; Hara R; Takeuchi K; Arita M; Imose N; Musashino K; Yuuki H; Oshima A; Sasaki N; Aotsuka S; Yoshikawa Y; Matsunawa H; Ichihara T; Shiohata N; Sano S; Moriya S; Momiyama H; Satoh N; Takami S; Terashima Y; Suzuki O; Nakagawa S; Senoh A; Mizoguchi H; Goto Y; Shimizu F; Wakebe H; Hishigaki H; Watanabe T; Sugiyama A; Takemoto M; Kawakami B; Yamazaki M; Watanabe K; Kumagai A; Itakura S; Fukuzumi Y; Fujimori Y; Komiyama M; Tashiro H; Tanigami A; Fujiwara T; Ono T; Yamada K; Fujii Y; Ozaki K; Hirao M; Ohmori Y; Kawabata A; Hikiji T; Kobatake N; Inagaki H; Ikema Y; Okamoto S; Okitani R; Kawakami T; Noguchi S; Itoh T; Shigeta K; Senba T; Matsumura K; Nakajima Y; Mizuno T; Morinaga M; Sasaki M; Togashi T; Oyama M; Hata H; Watanabe M; Komatsu T; Mizushima-Sugano J; Satoh T; Shirai Y; Takahashi Y; Nakagawa K; Okumura K; Nagase T; Nomura N; Kikuchi H; Masuho Y; Yamashita R; Nakai K; Yada T; Nakamura Y; Ohara O; Isogai T; Sugano S Complete sequencing and characterization of 21,243 full-length human cDNAs | 1 | 2 |
| 100 | 1 | 29 | 154 2004 PROTEIN SCIENCE 13(2):545-548
Kasai T; Inoue M; Koshiba S; Yabuki T; Aoki M; Nunokawa E; Seki E; Matsuda T; Matsuda N; Tomo Y; Shirouzu M; Terada T; Obayashi N; Hamana H; Shinya N; Tatsuguchi A; Yasuda S; Yoshida M; Hirota H; Matsuo Y; Tani K; Suzuki H; Arakawa T; Carninci P; Kawai J; Hayashizaki Y; Kigawa T; Yokoyama S Solution structure of a BolA-like protein from Mus musculus | 0 | 0 |
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