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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y. Okazaki et al. NATURE 420 (6915): 563-573 DEC 5 2002 and the citing papers. |
Nodes: 159
Authors: 1113,
Journals: 70,
Outer References: 5312
Collection span: 2002 - 2004
View: Overview. Sorted by NCR.
Page 2: 1 2
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
|---|---|---|---|---|---|
| 101 | 1 | 28 | 22 2003 FEBS LETTERS 554(1-2):17-22
Fujimori S; Washio T; Higo K; Ohtomo Y; Murakami K; Matsubara K; Kawai J; Carninci P; Hayashizaki Y; Kikuchi S; Tomita M A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription | 0 | 0 |
| 102 | 1 | 28 | 25 2003 GENE 321():103-112
Baranova A; Hammarsund M; Ivanova D; Skoblov M; Sangfelt O; Corcoran M; Borodina T; Makeeva N; Pestova A; Tyazhelova T; Nazarenko S; Gorreta F; Alsheddi T; Schlauch K; Nikitin E; Kapanadze B; Shagin D; Poltaraus A; Vorobiev AI; Zabarovsky E; Lukianov S; Chandhoke V; Ibbotson R; Oscier D; Einhorn S; Grander D; Yankovsky N Distinct organization of the candidate tumor suppressor gene RFP2 in human and mouse: multiple mRNA isoforms in both species-and human-specific antisense transcript RFP2OS | 0 | 0 |
| 103 | 1 | 28 | 70 2003 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 12(3):391-397
Ahn SK A bioinformatics-based approach for the prediction and identification of novel proteins potentially involved in phosphorylation signalling pathways | 0 | 0 |
| 104 | 1 | 28 | 77 2003 MEDICAL JOURNAL OF AUSTRALIA 179(4):212-216
Mattick JS The human genome and the future of medicine | 0 | 0 |
| 105 | 1 | 28 | 126 2004 GENOME RESEARCH 14(5):942-950
Curwen V; Eyras E; Andrews TD; Clarke L; Mongin E; Searle SMJ; Clamp M The Ensembl automatic gene annotation system | 0 | 0 |
| 106 | 2 | 28 | 151 2004 NUCLEIC ACIDS RESEARCH 32():D568-D571
Hill DP; Begley DA; Finger JH; Hayamizu TF; McCright IJ; Smith CM; Beal JS; Corbani LE; Blake JA; Eppig JT; Kadin JA; Richardson JE; Ringwald M The mouse Gene Expression Database (GXD): updates and enhancements | 0 | 2 |
| 107 | 1 | 27 | 75 2003 JOURNAL OF MOLECULAR EVOLUTION 56(6):711-717
Kuhns ST; Joyce GF Perfectly complementary nucleic acid enzymes | 0 | 0 |
| 108 | 1 | 27 | 79 2003 NATURE 423(6941):762-769
Yamauchi T; Kamon J; Ito Y; Tsuchida A; Yokomizo T; Kita S; Sugiyama T; Miyagishi M; Hara K; Tsunoda M; Murakami K; Ohteki T; Uchida S; Takekawa S; Waki H; Tsuno NH; Shibata Y; Terauchi Y; Froguel P; Tobe K; Koyasu S; Taira K; Kitamura T; Shimizu T; Nagai R; Kadowaki T Cloning of adiponectin receptors that mediate antidiabetic metabolic effects | 0 | 72 |
| 109 | 1 | 26 | 64 2003 GENOME RESEARCH 13(7):1631-1637
Sorek R; Ast G Intronic sequences flanking alternatively spliced exons are conserved between human and mouse | 0 | 7 |
| 110 | 1 | 25 | 8 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 308(4):872-877
Oda R; Yaoi T; Okajima S; Kobashi H; Kubo T; Fushiki S A novel marker for terminal Schwann cells, homocysteine-responsive ER-resident protein, as isolated by a single cell PCR-differential display | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 111 | 1 | 25 | 109 2004 BIOINFORMATICS 20(8):1285-1291
Gan HH; Fera D; Zorn J; Shiffeldrim N; Tang M; Laserson U; Kim N; Schlick T RAG: RNA-As-Graphs database - concepts, analysis, and features | 0 | 0 |
| 112 | 3 | 25 | 123 2004 GENOME RESEARCH 14(2):280-286
Veeramachaneni V; Makalowski W; Galdzicki M; Sood R; Makalowska I Mammalian overlapping genes: The comparative perspective | 0 | 0 |
| 113 | 4 | 25 | 141 2004 NATURE REVIEWS GENETICS 5(3):223-228
Hayashizaki Y; Kawai J Innovation - A new approach to the distribution and storage of genetic resources | 0 | 0 |
| 114 | 1 | 24 | 1 2002 CYTOGENETIC AND GENOME RESEARCH 99(1-4):151-156
Kiyosawa H; Abe K Speculations on the role of natural antisense transcripts in mammalian X chromosome evolution | 2 | 1 |
| 115 | 1 | 24 | 5 2003 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 2812():462-475
Shibuya T; Kurochkin I Match chaining algorithms for cDNA mapping | 0 | 0 |
| 116 | 1 | 24 | 41 2003 GENOME RESEARCH 13(6B):1350-1359
Grimmond SM; Miranda KC; Yuan Z; Davis MJ; Hume DA; Yagi K; Tominaga N; Bono H; Hayashizaki Y; Okazaki Y; Teasdale RD The mouse secretome: Functional classification of the proteins secreted into the extracellular environment | 0 | 1 |
| 117 | 1 | 24 | 47 2003 GENOME RESEARCH 13(6B):1410-1415
Holmes R; Williamson C; Peters J; Denny P; Wells C A comprehensive transcript map of the mouse Gnas imprinted complex | 1 | 3 |
| 118 | 1 | 24 | 106 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 316(2):437-445
Sugino H; Yanase H; Hamada S; Kurokawa K; Asakawa S; Shimizu N; Yagi T Distinct genomic sequence of the CNR/Pcdh alpha genes in chicken | 0 | 0 |
| 119 | 2 | 24 | 110 2004 BIOTECHNIQUES 36(4):690-+
Wu JQ; Garcia AM; Hulyk S; Sneed A; Kowis C; Yuan Y; Steffen D; McPherson JD; Gunaratne PH; Gibbs RA Large-scale RT-PCR recovery of full-length cDNA clones | 0 | 0 |
| 120 | 4 | 24 | 116 2004 FEBS LETTERS 559(1-3):22-26
Kodzius R; Matsumura Y; Kasukawa T; Shimokawa K; Fukuda S; Shiraki T; Nakamura M; Arakawa T; Sasaki D; Kawai J; Harbers M; Carninci P; Hayashizaki Y Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 121 | 3 | 24 | 147 2004 NUCLEIC ACIDS RESEARCH 32():D471-D475
Nagashima T; Matsuda H; Silva DG; Petrovsky N; Konagaya A; Schonbach C FREP: a database of functional repeats in mouse cDNAs | 0 | 0 |
| 122 | 1 | 23 | 21 2003 DNA RESEARCH 10(1):49-57
Jikuya H; Takano J; Kikuno R; Hirosawa M; Nagase T; Nomura N; Ohara O Characterization of long cDNA clones from human adult spleen. II. The complete sequences of 81 cDNA clones | 0 | 1 |
| 123 | 4 | 21 | 111 2004 BMC GENOMICS 5():-
Silva DG; Schonbach C; Brusic V; Socha LA; Nagashima T; Petrovsky N Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system | 0 | 0 |
| 124 | 1 | 21 | 130 2004 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37(1):75-82
Yu U; Lee SH; Kim YJ; Kim S Bioinformatics in the post-genome era | 0 | 0 |
| 125 | 1 | 20 | 60 2003 GENOME RESEARCH 13(6B):1542-1551
Kasukawa T; Furuno M; Nikaido I; Bono H; Hume DA; Bult C; Hill DP; Baldarelli R; Gough J; Kanapin A; Matsuda H; Schriml LM; Hayashizaki Y; Okazaki Y; Quackenbush J Development and evaluation of an automated annotation pipeline and cDNA annotation system | 3 | 6 |
| 126 | 3 | 20 | 100 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15776-15781
Shiraki T; Kondo S; Katayama S; Waki K; Kasukawa T; Kawaji H; Kodzius R; Watahiki A; Nakamura M; Arakawa T; Fukuda S; Sasaki D; Podhajska A; Harbers M; Kawai J; Carninci P; Hayashizaki Y Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage | 1 | 2 |
| 127 | 1 | 20 | 118 2004 GENE 331():115-123
Zhou GJ; Wang J; Zhang Y; Zhong CM; Ni J; Wang L; Guo JH; Zhang KX; Yu L; Zhao SY Cloning, expression and subeellular localization of HN1 and HN1L genes, as well as characterization of their orthologs, defining an evolutionarily conserved gene family | 0 | 0 |
| 128 | 1 | 20 | 146 2004 NUCLEIC ACIDS RESEARCH 32():D383-D387
Yazaki J; Kojima K; Suzuki K; Kishimoto N; Kikuchi S The Rice PIPELINE: a unification tool for plant functional genomics | 0 | 1 |
| 129 | 1 | 19 | 26 2003 GENE EXPRESSION PATTERNS 3(6):735-741
Holmes G; Crooijmans R; Groenen M; Niswander L ALC ((a)under-bardjacent to (L)under-barMX1 in (c)under-barhick) is a novel dorsal limb mesenchyme marker | 0 | 0 |
| 130 | 2 | 19 | 30 2003 GENOME BIOLOGY 4(4):-
Rossant J; Scherer SW The mouse genome sequence - the end of the tail, or just the beginning? | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 131 | 1 | 19 | 87 2003 NUCLEIC ACIDS RESEARCH 31(13):3533-3536
Lee BTK; Tan TW; Ranganathan S MGAlignIt: a web service for the alignment of mRNA/EST and genomic sequences | 0 | 0 |
| 132 | 1 | 18 | 57 2003 GENOME RESEARCH 13(6B):1505-1519
Baldarelli RM; Hill DP; Blake JA; Adachi J; Furuno M; Bradt D; Corbani LE; Cousins S; Frazer KS; Qi D; Yang LL; Ramachandran S; Reed D; Zhu YX; Kasukawa T; Ringwald M; King BL; Maltais LJ; McKenzie LM; Schriml LM; Maglott D; Church DM; Pruitt K; Eppig JT; Richardson JE; Kadin JA; Bult CJ Connecting sequence and biology in the laboratory mouse | 3 | 6 |
| 133 | 2 | 18 | 153 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(22):8366-8371
Abramowitz J; Grenet D; Birnbaumer M; Torres HN; Birnbaumer L XL alpha s, the extra-long form of the alpha-subunit of the Gs G protein, is significantly longer than suspected, and so is its companion Alex | 0 | 0 |
| 134 | 1 | 17 | 89 2003 NUCLEIC ACIDS RESEARCH 31(13):3608-3612
Grillo G; Licciulli F; Liuni S; Sbisa E; Pesole G PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences | 0 | 1 |
| 135 | 2 | 16 | 12 2003 BIOTECHNIQUES 35(3):510-+
Hirozane-Kishikawa T; Shiraki T; Waki K; Nakamura M; Arakawa T; Kawai J; Fagiolini M; Hensch TK; Hayashizaki Y; Carninci P Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts | 0 | 0 |
| 136 | 1 | 16 | 37 2003 GENOME RESEARCH 13(6B):1318-1323
Bono H; Yagi K; Kasukawa T; Nikaido I; Tominaga N; Miki R; Mizuno Y; Tomaru Y; Goto H; Nitanda H; Shimizu D; Makino H; Morita T; Fujiyama J; Sakai T; Shimoji T; Hume DA; Hayashizaki Y; Okazaki Y Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays | 4 | 5 |
| 137 | 1 | 16 | 40 2003 GENOME RESEARCH 13(6B):1345-1349
Bono H; Nikaido I; Kasukawa T; Hayashizaki Y; Okazaki Y Comprehensive analysis of the mouse metabolome based on the transcriptome | 1 | 3 |
| 138 | 1 | 16 | 42 2003 GENOME RESEARCH 13(6B):1360-1365
Wells CA; Ravasi T; Sultana R; Yagi K; Carninci P; Bono H; Faulkner G; Okazaki Y; Quackenbush J; Hume DA; Lyons PA Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage | 1 | 2 |
| 139 | 4 | 16 | 149 2004 NUCLEIC ACIDS RESEARCH 32():D548-D551
Nikaido I; Saito C; Wakamoto A; Tomaru Y; Arakawa T; Hayashizaki Y; Okazaki Y EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes | 0 | 0 |
| 140 | 1 | 15 | 56 2003 GENOME RESEARCH 13(6B):1501-1504
Lenhard B; Wahlestedt C; Wasserman WW GeneLynx Mouse: Integrated portal to the mouse genome | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 141 | 1 | 15 | 150 2004 NUCLEIC ACIDS RESEARCH 32():D552-D556
Visel A; Thaller C; Eichele G GenePaint.org: an atlas of gene expression patterns in the mouse embryo | 0 | 0 |
| 142 | 1 | 14 | 54 2003 GENOME RESEARCH 13(6B):1488-1495
Kawai J; Hayashizaki Y DNA book | 2 | 3 |
| 143 | 1 | 14 | 55 2003 GENOME RESEARCH 13(6B):1496-1500
Schriml LM; Hill DP; Blake JA; Bono H; Wynshaw-Boris A; Pavan WJ; Ring BZ; Beisel K; Setou M; Okazaki Y Human disease genes and their cloned mouse orthologs: Exploration of the FANTOM2 cDNA sequence data set | 2 | 3 |
| 144 | 1 | 13 | 44 2003 GENOME RESEARCH 13(6B):1389-1394
Semple CAM The comparative proteomics of ubiquitination in mouse | 0 | 1 |
| 145 | 1 | 13 | 145 2004 NUCLEIC ACIDS RESEARCH 32():D258-D261
Harris MA; Clark J; Ireland A; Lomax J; Ashburner M; Foulger R; Eilbeck K; Lewis S; Marshall B; Mungall C; Richter J; Rubin GM; Blake JA; Bult C; Dolan M; Drabkin H; Eppig JT; Hill DP; Ni L; Ringwald M; Balakrishnan R; Cherry JM; Christie KR; Costanzo MC; Dwight SS; Engel S; Fisk DG; Hirschman JE; Hong EL; Nash RS; Sethuraman A; Theesfeld CL; Botstein D; Dolinski K; Feierbach B; Berardini T; Mundodi S; Rhee SY; Apweiler R; Barrell D; Camon E; Dimmer E; Lee V; Chisholm R; Gaudet P; Kibbe W; Kishore R; Schwarz EM; Sternberg P; Gwinn M; Hannick L; Wortman J; Berriman M; Wood V; de la Cruz N; Tonellato P; Jaiswal P; Seigfried T; White R The Gene Ontology (GO) database and informatics resource | 0 | 6 |
| 146 | 1 | 11 | 16 2003 COMPTES RENDUS BIOLOGIES 326(10-11):971-977
Gunaratne PH; Wu JQ; Garcia AM; Hulyk S; Worley KC; Margolin JF; Gibbs RA Concatenation cDNA sequencing for transcriptome analysis | 0 | 0 |
| 147 | 1 | 11 | 103 2003 SEIKAGAKU 75(2):149-152
Bono H; Kasukawa T; Furuno M; Hayashizaki Y; Okazaki Y FANTOM-DB: database of functional annotation of RIKEN mouse cDNA clones | 0 | 0 |
| 148 | 1 | 10 | 53 2003 GENOME RESEARCH 13(6B):1478-1487
Furuno M; Kasukawa T; Saito R; Adachi J; Suzuki H; Baldarelli R; Hayashizaki Y; Okazaki Y CDS annotation in full-length cDNA sequence | 1 | 3 |
| 149 | 1 | 10 | 81 2003 NATURE BIOTECHNOLOGY 21(1):31-32
Sands AT The master mammal | 0 | 0 |
| 150 | 1 | 10 | 82 2003 NATURE GENETICS 33(1):3-4
O'Brien T; Woychik R Our small relative | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 151 | 1 | 10 | 144 2004 NUCLEIC ACIDS RESEARCH 32():D78-D81
Suzuki Y; Yamashita R; Sugano S; Nakai K DBTSS, DataBase of Transcriptional Start Sites: progress report 2004 | 0 | 1 |
| 152 | 3 | 9 | 148 2004 NUCLEIC ACIDS RESEARCH 32():D476-D481
Bult CJ; Blake JA; Richardson JE; Kadin JA; Eppig JT The Mouse Genome Database (MGD): integrating biology with the genome | 0 | 2 |
| 153 | 1 | 8 | 15 2003 COMPTES RENDUS BIOLOGIES 326(10-11):967-970
Dalla E; Verardo R; Lazarevic D; Marchionni L; Reid JF; Bahar N; Klaric E; Marcuzzi G; Marzio R; Belgrano A; Licastro D; Schneider C LNCIB human full-length cDNAs collection: towards a better comprehension of the human transcriptome | 0 | 0 |
| 154 | 1 | 8 | 68 2003 HEREDITY 90(2):115-116
Hughes AL Comparative genomics - Genomes of mice and men | 0 | 0 |
| 155 | 1 | 4 | 32 2003 GENOME RESEARCH 13(6B):1267-1272
Okazaki Y; Hume DA A guide to the mammalian genome - Commentary | 1 | 1 |
| 156 | 1 | 4 | 61 2003 GENOME RESEARCH 13(6B):1552-1553
Batalov S; Fletcher CF Exon structure analysis, ortholog identification, and SNP candidate screening by mapping mouse RIKEN sequences to multiple genome assemblies | 0 | 0 |
| 157 | 1 | 4 | 84 2003 NATURE REVIEWS GENETICS 4(1):4-5
Gunter C Mouse genome - The mighty mouse | 0 | 0 |
| 158 | 1 | 2 | 62 2003 GENOME RESEARCH 13(6B):1554-1555
Kiyosawa H; Kawashima T; Hasegawa Y; Yamanaka I; Sakai K; Kondo S; Hayashizaki Y Introduction of RIKEN-GenoMapper, mapping viewer system | 1 | 1 |
| 159 | 1 | 2 | 63 2003 GENOME RESEARCH 13(6B):1556-1557
Batalov S; Su AI; Ching KA; Fletcher CF Functional annotation of RIKEN mouse cDNA clones using GNF expression atlas | 0 | 0 |
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