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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Y. Okazaki et al.
NATURE
420 (6915): 563-573 DEC 5 2002
and the citing papers.

Nodes: 159
Authors: 1113, Journals: 70, Outer References: 5312
Collection span: 2002 - 2004
View: Overview. Sorted by LCR.
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#LCRNCRNodes / Authors / DateLCSGCS
101128371 2003 INTERNATIONAL REVIEW OF CYTOLOGY - A SURVEY OF CELL BIOLOGY, VOL 231 231():197-258
Szymaski M; Barciszewski J
Regulation by RNA
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10214472 2003 JOURNAL OF APPLIED PHYSIOLOGY 94(4):1650-1659
Svenson KL; Bogue MA; Peters LL
Genetic models in applied physiology - Invited review: Identifying new mouse models of cardiovascular disease: a review of high-throughput screens of mutagenized and inbred strains
03
10318673 2003 JOURNAL OF BIOCHEMISTRY 133(6):699-711
Kaneko-Ishino T; Kohda T; Ishino F
The regulation and biological significance of genomic imprinting in mammals
02
10412775 2003 JOURNAL OF MOLECULAR EVOLUTION 56(6):711-717
Kuhns ST; Joyce GF
Perfectly complementary nucleic acid enzymes
00
10516576 2003 MAMMALIAN GENOME 14(8):565-579
Tuggle CK; Green JA; Fitzsimmons C; Woods R; Prather RS; Malchenko S; Soares MB; Kucaba T; Crouch K; Smith C; Tack D; Robinson N; O'Leary B; Scheetz T; Casavant T; Pomp D; Edeal JB; Zhang YD; Rothschild MF; Garwood K; Beavis W
EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human
13
10612877 2003 MEDICAL JOURNAL OF AUSTRALIA 179(4):212-216
Mattick JS
The human genome and the future of medicine
00
10715278 2003 MOLECULAR & CELLULAR PROTEOMICS 2(2):96-106
Kislinger T; Rahman K; Radulovic D; Cox B; Rossant J; Emili A
PRISM, a generic large scale proteomic investigation strategy for mammals
011
10812779 2003 NATURE 423(6941):762-769
Yamauchi T; Kamon J; Ito Y; Tsuchida A; Yokomizo T; Kita S; Sugiyama T; Miyagishi M; Hara K; Tsunoda M; Murakami K; Ohteki T; Uchida S; Takekawa S; Waki H; Tsuno NH; Shibata Y; Terauchi Y; Froguel P; Tobe K; Koyasu S; Taira K; Kitamura T; Shimizu T; Nagai R; Kadowaki T
Cloning of adiponectin receptors that mediate antidiabetic metabolic effects
072
10913080 2003 NATURE 425(6953):81-86
Kile BT; Hentges KE; Clark AT; Nakamura H; Salinger AP; Liu B; Box N; Stockton DW; Johnson RL; Behringer RR; Bradley A; Justice MJ
Functional genetic analysis of mouse chromosome 11
014
11011081 2003 NATURE BIOTECHNOLOGY 21(1):31-32
Sands AT
The master mammal
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#LCRNCRNodes / Authors / DateLCSGCS
11111082 2003 NATURE GENETICS 33(1):3-4
O'Brien T; Woychik R
Our small relative
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11213083 2003 NATURE GENETICS 34(1):35-41
Reboul J; Vaglio P; Rual JF; Lamesch P; Martinez M; Armstrong CM; Li SM; Jacotot L; Bertin N; Janky R; Moore T; Hudson JR; Hartley JL; Brasch MA; Vandenhaute J; Boulton S; Endress GA; Jenna S; Chevet E; Papasotiropoulos V; Tolias PP; Ptacek J; Snyder M; Huang R; Chance MR; Lee HM; Doucette-Stamm L; Hill DE; Vidal M
C-elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression
335
1131484 2003 NATURE REVIEWS GENETICS 4(1):4-5
Gunter C
Mouse genome - The mighty mouse
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11419786 2003 NATURE REVIEWS IMMUNOLOGY 3(3):243-252
Rogner UC; Avner P
Congenic mice: Cutting tools for complex immune disorders
06
11511987 2003 NUCLEIC ACIDS RESEARCH 31(13):3533-3536
Lee BTK; Tan TW; Ranganathan S
MGAlignIt: a web service for the alignment of mRNA/EST and genomic sequences
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11613788 2003 NUCLEIC ACIDS RESEARCH 31(13):3554-3559
Halees AS; Leyfer D; Weng ZP
PromoSer: a large-scale mammalian promoter and transcription start site identification service
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11711789 2003 NUCLEIC ACIDS RESEARCH 31(13):3608-3612
Grillo G; Licciulli F; Liuni S; Sbisa E; Pesole G
PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences
01
11813490 2003 NUCLEIC ACIDS RESEARCH 31(21):6096-6103
de Bono B; Chothia C
Exegesis: a procedure to improve gene predictions and its use to find immunoglobulin superfamily proteins in the human and mouse genomes
00
11913691 2003 ONCOGENE 22(39):8031-8041
Ji P; Diederichs S; Wang WB; Boing S; Metzger R; Schneider PM; Tidow N; Brandt B; Buerger H; Bulk E; Thomas M; Berdel WE; Serve H; Muller-Tidow C
MALAT-1, a novel noncoding RNA, and thymosin beta 4 predict metastasis and survival in early-stage non-small cell lung cancer
00
12017492 2003 PHYSIOLOGICAL GENOMICS 16(1):90-98
Schwartz F; Duka A; Triantafyllidi E; Johns C; Duka I; Cui J; Gavras H
Serial analysis of gene expression in mouse kidney following angiotensin II administration
00
#LCRNCRNodes / Authors / DateLCSGCS
12114193 2003 PLOS BIOLOGY 1(3):410-419
Sharov AA; Piao YL; Matoba R; Dudekula DB; Qian Y; Vanburen V; Falco G; Martin PR; Stagg CA; Bassey UC; Wang YX; Carter MG; Hamatani T; Aiba K; Akutsu H; Sharova L; Tanaka TS; Kimber WL; Yoshikawa T; Jaradat SA; Pantano S; Nagaraja R; Boheler KR; Taub D; Hodes RJ; Longo DL; Schlessinger D; Keller J; Klotz E; Kelsoe G; Umezawa A; Vescovi AL; Rossant J; Kunath T; Hogan BLM; Curci A; D'Urso M; Kelso J; Hide W; Ko MSH
Transcriptome analysis of mouse stem cells and early embryos
01
12214794 2003 PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES 79(2):34-50
Yoshida T; Yoshimura K
Outline of disease gene hunting approaches in the Millennium Genome Project of Japan
00
12313995 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(3):1140-1145
Guigo R; Dermitzakis ET; Agarwal P; Ponting CP; Parra G; Reymond A; Abril JF; Keibler E; Lyle R; Ucla C; Antonarakis SE; Brent MR
Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes
717
12414896 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(14):8502-8507
Feng XR; Carlton JM; Joy DA; Mu JB; Furuya T; Suh BB; Wang YF; Barnwell JW; Su XZ
Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax
03
12512997 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12147-12152
Iourgenko V; Zhang WJ; Mickanin C; Daly I; Jiang C; Hexham JM; Orth AP; Miraglia L; Meltzer J; Garza D; Chirn GW; McWhinnie E; Cohen D; Skelton J; Terry R; Yu Y; Bodian D; Buxton FP; Zhu JA; Song CZ; Labow MA
Identification of a family of cAMP response element-binding protein coactivators by genome-scale functional analysis in mammalian cells
02
12614298 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12195-12200
Bell SM; Schreiner CM; Waclaw RR; Campbell K; Potter SS; Scott WJ
Sp8 is crucial for limb outgrowth and neuropore closure
02
12713599 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12201-12206
Schultz N; Hamra FK; Garbers DL
A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets
010
1281103101 2003 REPRODUCTION 125(4):457-468
Stanton JAL; Macgregor AB; Green DPL
Gene expression in the mouse preimplantation embryo
01
129111103 2003 SEIKAGAKU 75(2):149-152
Bono H; Kasukawa T; Furuno M; Hayashizaki Y; Okazaki Y
FANTOM-DB: database of functional annotation of RIKEN mouse cDNA clones
00
130130105 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 314(4):1086-1092
Nakane T; Satoh T; Inada Y; Nakayama J; Itoh F; Chiba S
Molecular cloning and expression of HRLRRP, a novel heart-restricted leucine-rich repeat protein
00
#LCRNCRNodes / Authors / DateLCSGCS
131124106 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 316(2):437-445
Sugino H; Yanase H; Hamada S; Kurokawa K; Asakawa S; Shimizu N; Yagi T
Distinct genomic sequence of the CNR/Pcdh alpha genes in chicken
00
132138107 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 317(4):1052-1060
Vierstraete E; Verleyen P; Sas F; Van den Bergh G; De Loof A; Arckens L; Schoofs L
The instantly released Drosophila immune proteome is infection-specific
00
133147108 2004 BIOCHEMICAL JOURNAL 379():385-393
Kuhn M; Ng CKD; Su YH; Kilic A; Mitko D; Bien-Ly N; Komuves LG; Yang RB
Identification of an orphan guanylate cyclase receptor selectively expressed in mouse testis
00
134125109 2004 BIOINFORMATICS 20(8):1285-1291
Gan HH; Fera D; Zorn J; Shiffeldrim N; Tang M; Laserson U; Kim N; Schlick T
RAG: RNA-As-Graphs database - concepts, analysis, and features
00
135149112 2004 CELL 116(4):499-509
Cawley S; Bekiranov S; Ng HH; Kapranov P; Sekinger EA; Kampa D; Piccolboni A; Sementchenko V; Cheng J; Williams AJ; Wheeler R; Wong B; Drenkow J; Yamanaka M; Patel S; Brubaker S; Tammana H; Helt G; Struhl K; Gingeras TR
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
17
136157113 2004 CELL RESEARCH 14(1):1-7
Hennig W
The revolution of the biology of the genome
00
137136115 2004 DEVELOPMENTAL DYNAMICS 229(2):373-379
Hou J; Yashiro K; Okazaki Y; Saijoh Y; Hayashizaki Y; Hamada H
Identification of a novel left-right asymmetrically expressed gene in the mouse belonging to the BPI/PLUNC superfamily
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138120118 2004 GENE 331():115-123
Zhou GJ; Wang J; Zhang Y; Zhong CM; Ni J; Wang L; Guo JH; Zhang KX; Yu L; Zhao SY
Cloning, expression and subeellular localization of HN1 and HN1L genes, as well as characterization of their orthologs, defining an evolutionarily conserved gene family
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139138119 2004 GENOME BIOLOGY 5(1):-
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Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae
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140140122 2004 GENOME RESEARCH 14(1):79-89
Zhang T; Haws P; Wu Q
Multiple variable first exons: A mechanism for cell-and tissue-specific gene regulation
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141128126 2004 GENOME RESEARCH 14(5):942-950
Curwen V; Eyras E; Andrews TD; Clarke L; Mongin E; Searle SMJ; Clamp M
The Ensembl automatic gene annotation system
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142169128 2004 IMMUNITY 20(6):669-679
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Illuminating autoimmune regulators through controlled variation of the mouse genome sequence
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143121130 2004 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37(1):75-82
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Bioinformatics in the post-genome era
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1441184132 2004 JOURNAL OF BIOMEDICAL SCIENCE 11(3):278-294
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145132134 2004 MOLECULAR AND CELLULAR BIOLOGY 24(9):3794-3803
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Insertion of the beta Geo promoter trap into the Fem1c gene of ROSA3 mice
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146157135 2004 MOLECULAR AND CELLULAR BIOLOGY 24(12):5620-5634
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1471184136 2004 MOLECULAR AND CELLULAR ENDOCRINOLOGY 218(1-2):7-20
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148133137 2004 MOLECULAR CELL 14(5):647-656
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151129140 2004 NATURE GENETICS 36(1):40-45
Ota T; Suzuki Y; Nishikawa T; Otsuki T; Sugiyama T; Irie R; Wakamatsu A; Hayashi K; Sato H; Nagai K; Kimura K; Makita H; Sekine M; Obayashi M; Nishi T; Shibahara T; Tanaka T; Ishii S; Yamamoto J; Saito K; Kawai Y; Isono Y; Nakamura Y; Nagahari K; Murakami K; Yasuda T; Iwayanagi T; Wagatsuma M; Shiratori A; Sudo H; Hosoiri T; Kaku Y; Kodaira H; Kondo H; Sugawara M; Takahashi M; Kanda K; Yokoi T; Furuya T; Kikkawa E; Omura Y; Abe K; Kamihara K; Katsuta N; Sato K; Tanikawa M; Yamazaki M; Ninomiya K; Ishibashi T; Yamashita H; Murakawa K; Fujimori K; Tanai H; Kimata M; Watanabe M; Hiraoka S; Chiba Y; Ishida S; Ono Y; Takiguchi S; Watanabe S; Yosida M; Hotuta T; Kusano J; Kanehori K; Takahashi-Fujii A; Hara H; Tanase T; Nomura Y; Togiya S; Komai F; Hara R; Takeuchi K; Arita M; Imose N; Musashino K; Yuuki H; Oshima A; Sasaki N; Aotsuka S; Yoshikawa Y; Matsunawa H; Ichihara T; Shiohata N; Sano S; Moriya S; Momiyama H; Satoh N; Takami S; Terashima Y; Suzuki O; Nakagawa S; Senoh A; Mizoguchi H; Goto Y; Shimizu F; Wakebe H; Hishigaki H; Watanabe T; Sugiyama A; Takemoto M; Kawakami B; Yamazaki M; Watanabe K; Kumagai A; Itakura S; Fukuzumi Y; Fujimori Y; Komiyama M; Tashiro H; Tanigami A; Fujiwara T; Ono T; Yamada K; Fujii Y; Ozaki K; Hirao M; Ohmori Y; Kawabata A; Hikiji T; Kobatake N; Inagaki H; Ikema Y; Okamoto S; Okitani R; Kawakami T; Noguchi S; Itoh T; Shigeta K; Senba T; Matsumura K; Nakajima Y; Mizuno T; Morinaga M; Sasaki M; Togashi T; Oyama M; Hata H; Watanabe M; Komatsu T; Mizushima-Sugano J; Satoh T; Shirai Y; Takahashi Y; Nakagawa K; Okumura K; Nagase T; Nomura N; Kikuchi H; Masuho Y; Yamashita R; Nakai K; Yada T; Nakamura Y; Ohara O; Isogai T; Sugano S
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The Rice PIPELINE: a unification tool for plant functional genomics
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Okazaki Y; Furuno M; Kasukawa T; Adachi J; Bono H; Kondo S; Nikaido I; Osato N; Saito R; Suzuki H; Yamanaka I; Kiyosawa H; Yagi K; Tomaru Y; Hasegawa Y; Nogami A; Schonbach C; Gojobori T; Baldarelli R; Hill DP; Bult C; Hume DA; Quackenbush J; Schriml LM; Kanapin A; Matsuda H; Batalov S; Beisel KW; Blake JA; Bradt D; Brusic V; Chothia C; Corbani LE; Cousins S; Dalla E; Dragani TA; Fletcher CF; Forrest A; Frazer KS; Gaasterland T; Gariboldi M; Gissi C; Godzik A; Gough J; Grimmond S; Gustincich S; Hirokawa N; Jackson IJ; Jarvis ED; Kanai A; Kawaji H; Kawasawa Y; Kedzierski RM; King BL; Konagaya A; Kurochkin IV; Lee Y; Lenhard B; Lyons PA; Maglott DR; Maltais L; Marchionni L; McKenzie L; Miki H; Nagashima T; Numata K; Okido T; Pavan WJ; Pertea G; Pesole G; Petrovsky N; Pillai R; Pontius JU; Qi D; Ramachandran S; Ravasi T; Reed JC; Reed DJ; Reid J; Ring BZ; Ringwald M; Sandelin A; Schneider C; Semple CAM; Setou M; Shimada K; Sultana R; Takenaka Y; Taylor MS; Teasdale RD; Tomita M; Verardo R; Wagner L; Wahlestedt C; Wang Y; Watanabe Y; Wells C; Wilming LG; Wynshaw-Boris A; Yanagisawa M; Yang I; Yang L; Yuan Z; Zavolan M; Zhu Y; Zimmer A; Carninci P; Hayatsu N; Hirozane-Kishikawa T; Konno H; Nakamura M; Sakazume N; Sato K; Shiraki T; Waki K; Kawai J; Aizawa K; Arakawa T; Fukuda S; Hara A; Hashizume W; Imotani K; Ishii Y; Itoh M; Kagawa I; Miyazaki A; Sakai K; Sasaki D; Shibata K; Shinagawa A; Yasunishi A; Yoshino M; Waterston R; Lander ES; Rogers J; Birney E; Hayashizaki Y
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
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