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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Y. Okazaki et al. NATURE 420 (6915): 563-573 DEC 5 2002 and the citing papers. |
Nodes: 159
Authors: 1113,
Journals: 70,
Outer References: 5312
Collection span: 2002 - 2004
View: Overview. Sorted by first author.
Page 2: 1 2
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
|---|---|---|---|---|---|
| 101 | 1 | 78 | 28 2003 GENETICS 163(4):1227-1235
Paigen K One hundred years of mouse genetics: An intellectual history. II. The molecular revolution (1981-2002) (Reprinted from The New Yorker, 2003) | 0 | 3 |
| 102 | 2 | 32 | 125 2004 GENOME RESEARCH 14(3):463-471
Porcel BM; Delfour O; Castelli V; De Berardinis V; Friedlander L; Cruaud C; Ureta-Vidal A; Scarpelli C; Wincker P; Schachter V; Saurin W; Gyapay G; Salanoubat M; Weissenbach J Numerous novel annotations of the human genome sequence supported by a 5 '-end-enriched cDNA collection | 0 | 0 |
| 103 | 1 | 38 | 49 2003 GENOME RESEARCH 13(6B):1430-1442
Ravasi T; Huber T; Zavolan M; Forrest A; Gaasterland T; Grimmond S; Hume DA Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome | 0 | 4 |
| 104 | 1 | 30 | 83 2003 NATURE GENETICS 34(1):35-41
Reboul J; Vaglio P; Rual JF; Lamesch P; Martinez M; Armstrong CM; Li SM; Jacotot L; Bertin N; Janky R; Moore T; Hudson JR; Hartley JL; Brasch MA; Vandenhaute J; Boulton S; Endress GA; Jenna S; Chevet E; Papasotiropoulos V; Tolias PP; Ptacek J; Snyder M; Huang R; Chance MR; Lee HM; Doucette-Stamm L; Hill DE; Vidal M C-elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression | 3 | 35 |
| 105 | 2 | 74 | 117 2004 GENE 325():63-78
Retta SF; Avolio M; Francalanci F; Procida S; Balzac F; Degani S; Tarone G; Silengo L Identification of Krit1B: a novel alternative splicing isoform of cerebral cavernous malformation gene-1 | 0 | 0 |
| 106 | 1 | 97 | 86 2003 NATURE REVIEWS IMMUNOLOGY 3(3):243-252
Rogner UC; Avner P Congenic mice: Cutting tools for complex immune disorders | 0 | 6 |
| 107 | 2 | 19 | 30 2003 GENOME BIOLOGY 4(4):-
Rossant J; Scherer SW The mouse genome sequence - the end of the tail, or just the beginning? | 0 | 0 |
| 108 | 3 | 44 | 114 2004 CURRENT OPINION IN CHEMICAL BIOLOGY 8(1):20-25
Rual JF; Hill DE; Vidal M ORFeome projects: gateway between genomics and omics | 0 | 0 |
| 109 | 1 | 67 | 158 2004 TRENDS IN BIOTECHNOLOGY 22(1):23-30
Ruan YJ; Le Ber P; Ng HH; Liu ET Interrogating the transcriptome | 0 | 1 |
| 110 | 1 | 30 | 6 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 301(3):633-640
Saito R; Suzuki H; Hayashizaki Y Global insights into protein complexes through integrated analysis of the reliable interactome and knockout lethality | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 111 | 1 | 10 | 81 2003 NATURE BIOTECHNOLOGY 21(1):31-32
Sands AT The master mammal | 0 | 0 |
| 112 | 1 | 32 | 134 2004 MOLECULAR AND CELLULAR BIOLOGY 24(9):3794-3803
Schlamp CL; Thliveris AT; Li Y; Kohl LP; Knop C; Dietz JA; Larsen IV; Imesch P; Pinto LH; Nickells RW Insertion of the beta Geo promoter trap into the Fem1c gene of ROSA3 mice | 0 | 0 |
| 113 | 1 | 14 | 55 2003 GENOME RESEARCH 13(6B):1496-1500
Schriml LM; Hill DP; Blake JA; Bono H; Wynshaw-Boris A; Pavan WJ; Ring BZ; Beisel K; Setou M; Okazaki Y Human disease genes and their cloned mouse orthologs: Exploration of the FANTOM2 cDNA sequence data set | 2 | 3 |
| 114 | 1 | 35 | 99 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12201-12206
Schultz N; Hamra FK; Garbers DL A multitude of genes expressed solely in meiotic or postmeiotic spermatogenic cells offers a myriad of contraceptive targets | 0 | 10 |
| 115 | 1 | 77 | 4 2003 ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH 27(5):880-888
Schumann G; Spanagel R; Mann K Candidate genes for alcohol dependence: Animal studies | 0 | 2 |
| 116 | 1 | 74 | 92 2003 PHYSIOLOGICAL GENOMICS 16(1):90-98
Schwartz F; Duka A; Triantafyllidi E; Johns C; Duka I; Cui J; Gavras H Serial analysis of gene expression in mouse kidney following angiotensin II administration | 0 | 0 |
| 117 | 1 | 13 | 44 2003 GENOME RESEARCH 13(6B):1389-1394
Semple CAM The comparative proteomics of ubiquitination in mouse | 0 | 1 |
| 118 | 2 | 53 | 133 2004 JOURNAL OF NEUROBIOLOGY 58(2):201-206
Setou M; Hayasaka T; Yao I Axonal transport versus dendritic transport | 0 | 0 |
| 119 | 2 | 73 | 121 2004 GENOME BIOLOGY 5(4):-
Shabalina SA; Spiridonov NA The mammalian transcriptome and the function of non-coding DNA sequences | 0 | 0 |
| 120 | 1 | 41 | 93 2003 PLOS BIOLOGY 1(3):410-419
Sharov AA; Piao YL; Matoba R; Dudekula DB; Qian Y; Vanburen V; Falco G; Martin PR; Stagg CA; Bassey UC; Wang YX; Carter MG; Hamatani T; Aiba K; Akutsu H; Sharova L; Tanaka TS; Kimber WL; Yoshikawa T; Jaradat SA; Pantano S; Nagaraja R; Boheler KR; Taub D; Hodes RJ; Longo DL; Schlessinger D; Keller J; Klotz E; Kelsoe G; Umezawa A; Vescovi AL; Rossant J; Kunath T; Hogan BLM; Curci A; D'Urso M; Kelso J; Hide W; Ko MSH Transcriptome analysis of mouse stem cells and early embryos | 0 | 1 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 121 | 1 | 24 | 5 2003 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 2812():462-475
Shibuya T; Kurochkin I Match chaining algorithms for cDNA mapping | 0 | 0 |
| 122 | 1 | 35 | 23 2003 GENE 310():17-28
Shimizu H; Taniguchi H; Hippo Y; Hayashizaki Y; Aburatani H; Ishikawa T Characterization of the mouse Abcc12 gene and its transcript encoding an ATP-binding cassette transporter, an orthologue of human ABCC12 | 0 | 1 |
| 123 | 3 | 20 | 100 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15776-15781
Shiraki T; Kondo S; Katayama S; Waki K; Kasukawa T; Kawaji H; Kodzius R; Watahiki A; Nakamura M; Arakawa T; Fukuda S; Sasaki D; Podhajska A; Harbers M; Kawai J; Carninci P; Hayashizaki Y Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage | 1 | 2 |
| 124 | 4 | 21 | 111 2004 BMC GENOMICS 5():-
Silva DG; Schonbach C; Brusic V; Socha LA; Nagashima T; Petrovsky N Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system | 0 | 0 |
| 125 | 1 | 26 | 64 2003 GENOME RESEARCH 13(7):1631-1637
Sorek R; Ast G Intronic sequences flanking alternatively spliced exons are conserved between human and mouse | 0 | 7 |
| 126 | 4 | 78 | 155 2004 PROTEOMICS 4(6):1712-1726
Southan C Has the yo-yo stopped? - An assessment of human protein-coding gene number | 0 | 0 |
| 127 | 1 | 103 | 101 2003 REPRODUCTION 125(4):457-468
Stanton JAL; Macgregor AB; Green DPL Gene expression in the mouse preimplantation embryo | 0 | 1 |
| 128 | 1 | 176 | 3 2003 ADVANCED DRUG DELIVERY REVIEWS 55(8):1081-1112
Stone LS; Vulchanova L The pain of antisense: in vivo application of antisense oligonucleotides for functional genomics in pain and analgesia | 0 | 0 |
| 129 | 2 | 36 | 152 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(16):6062-6067
Su AI; Wiltshire T; Batalov S; Lapp H; Ching KA; Block D; Zhang J; Soden R; Hayakawa M; Kreiman G; Cooke MP; Walker JR; Hogenesch JB A gene atlas of the mouse and human protein-encoding transcriptomes | 0 | 1 |
| 130 | 1 | 24 | 106 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 316(2):437-445
Sugino H; Yanase H; Hamada S; Kurokawa K; Asakawa S; Shimizu N; Yagi T Distinct genomic sequence of the CNR/Pcdh alpha genes in chicken | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 131 | 1 | 34 | 59 2003 GENOME RESEARCH 13(6B):1534-1541
Suzuki H; Saito R; Kanamori M; Kai C; Schonbach C; Nagashima T; Hosaka J; Hayashizaki Y The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer | 1 | 1 |
| 132 | 1 | 10 | 144 2004 NUCLEIC ACIDS RESEARCH 32():D78-D81
Suzuki Y; Yamashita R; Sugano S; Nakai K DBTSS, DataBase of Transcriptional Start Sites: progress report 2004 | 0 | 1 |
| 133 | 1 | 44 | 72 2003 JOURNAL OF APPLIED PHYSIOLOGY 94(4):1650-1659
Svenson KL; Bogue MA; Peters LL Genetic models in applied physiology - Invited review: Identifying new mouse models of cardiovascular disease: a review of high-throughput screens of mutagenized and inbred strains | 0 | 3 |
| 134 | 1 | 29 | 67 2003 HERALD OF THE RUSSIAN ACADEMY OF SCIENCES 73(3):262-269
Sverdlov ED DNA in a cell: From a molecular icon to the problem of "what is life?" | 0 | 0 |
| 135 | 1 | 283 | 71 2003 INTERNATIONAL REVIEW OF CYTOLOGY - A SURVEY OF CELL BIOLOGY, VOL 231 231():197-258
Szymaski M; Barciszewski J Regulation by RNA | 0 | 0 |
| 136 | 1 | 87 | 48 2003 GENOME RESEARCH 13(6B):1416-1429
Tajul-Arifin K; Teasdale R; Ravasi T; Hume DA; Mattick JS Identification and analysis of chromodomain-containing proteins encoded in the mouse transcriptome | 0 | 0 |
| 137 | 2 | 34 | 9 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 310(2):667-674
Tomaru Y; Kondo SJ; Suzuki M; Hayashizaki Y A comprehensive search for HNF-3 alpha-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis | 0 | 2 |
| 138 | 1 | 65 | 76 2003 MAMMALIAN GENOME 14(8):565-579
Tuggle CK; Green JA; Fitzsimmons C; Woods R; Prather RS; Malchenko S; Soares MB; Kucaba T; Crouch K; Smith C; Tack D; Robinson N; O'Leary B; Scheetz T; Casavant T; Pomp D; Edeal JB; Zhang YD; Rothschild MF; Garwood K; Beavis W EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human | 1 | 3 |
| 139 | 3 | 25 | 123 2004 GENOME RESEARCH 14(2):280-286
Veeramachaneni V; Makalowski W; Galdzicki M; Sood R; Makalowska I Mammalian overlapping genes: The comparative perspective | 0 | 0 |
| 140 | 1 | 38 | 107 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 317(4):1052-1060
Vierstraete E; Verleyen P; Sas F; Van den Bergh G; De Loof A; Arckens L; Schoofs L The instantly released Drosophila immune proteome is infection-specific | 0 | 0 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 141 | 1 | 69 | 128 2004 IMMUNITY 20(6):669-679
Vinuesa CG; Goodnow CC Illuminating autoimmune regulators through controlled variation of the mouse genome sequence | 0 | 0 |
| 142 | 1 | 15 | 150 2004 NUCLEIC ACIDS RESEARCH 32():D552-D556
Visel A; Thaller C; Eichele G GenePaint.org: an atlas of gene expression patterns in the mouse embryo | 0 | 0 |
| 143 | 1 | 46 | 20 2003 DEVELOPMENT GENES AND EVOLUTION 213(5-6):222-234
Wada S; Tokuoka M; Shoguchi E; Kobayashi K; Di Gregorio A; Spagnuolo A; Branno M; Kohara Y; Rokhsar D; Levine M; Saiga H; Satoh N; Satou Y A genomewide survey of developmentally relevant genes in Ciona intestinalis - II. Genes for homeobox transcription factors | 0 | 5 |
| 144 | 4 | 39 | 85 2003 NATURE REVIEWS GENETICS 4(9):741-749
Wang J; Li ST; Zhang Y; Zheng HK; Xu Z; Ye J; Yu J; Wong GKS Vertebrate gene predictions and the problem of large genes | 0 | 0 |
| 145 | 1 | 36 | 7 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 305(4):840-845
Wang LJ; Urbauer RJB; Urbauer JL; Benson DR House fly cytochrome b(5) exhibits kinetically trapped hemin and selectivity in hemin binding | 0 | 1 |
| 146 | 1 | 98 | 142 2004 NATURE REVIEWS GENETICS 5(4):276-287
Wasserman WW; Sandelin A Applied bioinformatics for the identification of regulatory elements | 0 | 1 |
| 147 | 1 | 16 | 42 2003 GENOME RESEARCH 13(6B):1360-1365
Wells CA; Ravasi T; Sultana R; Yagi K; Carninci P; Bono H; Faulkner G; Okazaki Y; Quackenbush J; Hume DA; Lyons PA Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage | 1 | 2 |
| 148 | 2 | 24 | 110 2004 BIOTECHNIQUES 36(4):690-+
Wu JQ; Garcia AM; Hulyk S; Sneed A; Kowis C; Yuan Y; Steffen D; McPherson JD; Gunaratne PH; Gibbs RA Large-scale RT-PCR recovery of full-length cDNA clones | 0 | 0 |
| 149 | 1 | 67 | 65 2003 GENOME RESEARCH 13(12):2621-2636
Xie T; Rowen L; Aguado B; Ahearn ME; Madan A; Qin SZ; Campbell RD; Hood L Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse | 0 | 2 |
| 150 | 2 | 41 | 102 2003 SCIENCE 302(5646):842-846
Yamada K; Lim J; Dale JM; Chen HM; Shinn P; Palm CJ; Southwick AM; Wu HC; Kim C; Nguyen M; Pham P; Cheuk R; Karlin-Newmann G; Liu SX; Lam B; Sakano H; Wu T; Yu GX; Miranda M; Quach HL; Tripp M; Chang CH; Lee JM; Toriumi M; Chan MMH; Tang CC; Onodera CS; Deng JM; Akiyama K; Ansari Y; Arakawa T; Banh J; Banno F; Bowser L; Brooks S; Carninci P; Chao QM; Choy N; Enju A; Goldsmith AD; Gurjal M; Hansen NF; Hayashizaki Y; Johnson-Hopson C; Hsuan VW; Iida K; Karnes M; Khan S; Koesema E; Ishida J; Jiang PX; Jones T; Kawai J; Kamiya A; Meyers C; Nakajima M; Narusaka M; Seki M; Sakurai T; Satou M; Tamse R; Vaysberg M; Wallender EK; Wong C; Yamamura Y; Yuan SL; Shinozaki K; Davis RW; Theologis A; Ecker JR Empirical analysis of transcriptional activity in the Arabidopsis genome | 3 | 17 |
| # | LCR | NCR | Nodes / Authors / Date | LCS | GCS |
| 151 | 1 | 27 | 79 2003 NATURE 423(6941):762-769
Yamauchi T; Kamon J; Ito Y; Tsuchida A; Yokomizo T; Kita S; Sugiyama T; Miyagishi M; Hara K; Tsunoda M; Murakami K; Ohteki T; Uchida S; Takekawa S; Waki H; Tsuno NH; Shibata Y; Terauchi Y; Froguel P; Tobe K; Koyasu S; Taira K; Kitamura T; Shimizu T; Nagai R; Kadowaki T Cloning of adiponectin receptors that mediate antidiabetic metabolic effects | 0 | 72 |
| 152 | 1 | 20 | 146 2004 NUCLEIC ACIDS RESEARCH 32():D383-D387
Yazaki J; Kojima K; Suzuki K; Kishimoto N; Kikuchi S The Rice PIPELINE: a unification tool for plant functional genomics | 0 | 1 |
| 153 | 1 | 47 | 94 2003 PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES 79(2):34-50
Yoshida T; Yoshimura K Outline of disease gene hunting approaches in the Millennium Genome Project of Japan | 0 | 0 |
| 154 | 1 | 21 | 130 2004 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37(1):75-82
Yu U; Lee SH; Kim YJ; Kim S Bioinformatics in the post-genome era | 0 | 0 |
| 155 | 1 | 51 | 34 2003 GENOME RESEARCH 13(6B):1290-1300
Zavolan M; Kondo S; Schonbach C; Adachi J; Hume DA; Hayashizaki Y; Gaasterland T Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome | 3 | 9 |
| 156 | 1 | 40 | 122 2004 GENOME RESEARCH 14(1):79-89
Zhang T; Haws P; Wu Q Multiple variable first exons: A mechanism for cell-and tissue-specific gene regulation | 0 | 0 |
| 157 | 1 | 184 | 132 2004 JOURNAL OF BIOMEDICAL SCIENCE 11(3):278-294
Zheng ZM Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression | 0 | 0 |
| 158 | 1 | 20 | 118 2004 GENE 331():115-123
Zhou GJ; Wang J; Zhang Y; Zhong CM; Ni J; Wang L; Guo JH; Zhang KX; Yu L; Zhao SY Cloning, expression and subeellular localization of HN1 and HN1L genes, as well as characterization of their orthologs, defining an evolutionarily conserved gene family | 0 | 0 |
| 159 | 1 | 109 | 138 2004 MOLECULAR PHARMACOLOGY 65(2):267-278
Zoraghi R; Corbin JD; Francis SH Properties and functions of GAF domains in cyclic nucleotide phosphodiesterases and other proteins | 0 | 0 |
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