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Mon Jul 31 15:49:43 2006

Rat Genome Sequencing Project Consortium
Genome sequence of the Brown Norway rat
yields insights into mammalian evolution
NATURE 428 (6982): 493-521 APR 1 2004
and the citing papers
Nodes: 353, Authors: 2563, Journals: 153, Outer References: 13847, Words: 1363
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by GCS.

Page 3 of 4: [  1  2  3  4 ]

#LCRNCRNode / Date / Journal / AuthorLCSGCS
201242152 2005 GENE 363: 51-60
Makarova JA; Kramerov DA
Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay
01
202147155 2005 GENETICS 169 (4): 2179-2188
Wu Q
Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes
01
203144156 2005 GENETICS 170 (4): 1887-1896
Smits BMG; Peters TA; Mul JD; Croes HJ; Fransen JAM; et al.
Identification of a rat model for usher syndrome type 1B by N-ethyl-N-nitrosourea mutagenesis-driven forward genetics
11
204184157 2005 GENETICS 171 (3): 1161-1171
Smith JJ; Kump DK; Walker JA; Parichy DM; Voss SR
A comprehensive expressed sequence tag linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in ambystoma
01
205138165 2005 GENOME RESEARCH 15 (1): 111-119
Abril JF; Castelo R; Guigo R
Comparison of splice sites in mammals and chicken
01
206144167 2005 GENOME RESEARCH 15 (1): 166-173
Kellner WA; Sullivan RT; Carlson BH; Thomas JW
Uprobe: A genome-wide universal probe resource for comparative physical mapping in vertebrates
01
207135168 2005 GENOME RESEARCH 15 (2): 292-301
Milosavljevic A; Harris RA; Sodergren EJ; Jackson AR; Kalafus KJ; et al.
Pooled genomic indexing of rhesus macaque
01
208251178 2005 GENOME RESEARCH 15 (11): 1519-1534
Smith AV; Thomas DJ; Munro HM; Abecasis GR
Sequence features in regions of weak and strong linkage disequilibrium
01
209470180 2005 GENOME RESEARCH 15 (12): 1777-1786
Brent MR
Genome annotation past, present, and future: How to define an ORF at each locus
11
210259188 2005 GENOMICS 86 (6): 638-647
Puente XS; Gutierrez-Fernandez A; Ordonez GR; Hillier LDW; Lopez-Otin C
Comparative genomic analysis of human and chimpanzee proteases
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
211221189 2005 GENOMICS 86 (6): 759-766
Raymond CK; Subramanian S; Paddock M; Qiu RL; Deodato C; et al.
Targeted, haplotype-resolved resequencing of long segments of the human genome
01
212129195 2005 HYPERTENSION 45 (5): 947-953
Iwai N; Yasui N; Naraba H; Tago N; Yamawaki H; et al.
Klk1 as one of the genes contributing to hypertension in Dahl salt-sensitive rat
01
213139205 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (3): 1953-1961
Cal S; Quesada V; Llamazares M; Diaz-Perales A; Garabaya C; et al.
Human polyserase-2, a novel enzyme with three tandem serine protease domains in a single polypeptide chain
01
214145208 2005 JOURNAL OF CELLULAR BIOCHEMISTRY 94 (5): 890-898
Arnosti DN; Kulkarni MM
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
01
215150217 2005 KIDNEY INTERNATIONAL 68 (6): 2462-2472
Van Dijk SJ; Specht PAC; Lutz MM; Lazar J; Jacob HJ; et al.
Interaction between Rf-1 and Rf-4 quantitative trait loci increases susceptibility to renal damage in double congenic rats
11
216234222 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (2): 360-366
Misceo D; Cardone MF; Carbone L; D'Addabbo P; de Jong PJ; et al.
Evolutionary history of chromosome 20
01
217143225 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (7): 1546-1554
Gogolevskaya IK; Koval AP; Kramerov DA
Evolutionary history of 4.5SH RNA
11
2184111243 2005 NATURE REVIEWS GENETICS 6 (9): 699-708
Gregory TR
Synergy between sequence and size in large-scale genomics
01
219117251 2005 NUCLEIC ACIDS RESEARCH 33: D492-D494
Petersen G; Johnson P; Andersson L; Klinga-Levan K; Gomez-Fabre PM; et al.
RatMap - rat genome tools and data
01
220173255 2005 PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY 450 (1): 13-25
Soutourina O; Cheval L; Doucet A
Global analysis of gene expression in mammalian kidney
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
221152259 2005 PHYSIOLOGICAL GENOMICS 23 (1): 62-71
Lee SJ; Ways JA; Barbato JC; Essig D; Pettee K; et al.
Gene expression profiling of the left ventricles in a rat model of intrinsic aerobic running capacity
01
222268263 2005 PLOS GENETICS 1 (5): 507-513
Parker HG; Ostrander EA
Canine genomics and genetics: Running with the pack
01
223121271 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (22): 7900-7905
McAuliffe JD; Jordan MI; Pachter L
Subtree power analysis and species selection for comparative genomics
11
2243133284 2005 TRENDS IN GENETICS 21 (12): 673-682
Coghlan A; Eichler EE; Oliver SG; Paterson AH; Stein L
Chromosome evolution in eukaryotes: a multi-kingdom perspective
01
22516286 2006 ANATOMICAL RECORD PART A-DISCOVERIES IN MOLECULAR CELLULAR AND EVOLUTIONARY BIOLOGY 288A (4): 326-330
Friedland DR
Structure and function in the auditory system: From cochlea to cortex
01
226142311 2006 GENETICS 172 (1): 425-436
Gautier M; Barcelona RR; Fritz S; Grohs C; Druet T; et al.
Fine mapping and physical characterization of two linked quantitative trait loci affecting milk fat yield in dairy cattle on BTA26
01
227330314 2006 GENOME RESEARCH 16 (2): 173-181
Wilson GM; Flibotte S; Missirlis PI; Marra MA; Jones S; et al.
Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla
01
228399324 2006 JOURNAL OF BIOMEDICAL INFORMATICS 39 (1): 51-61
Kosiol C; Bofkin L; Whelan S
Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome
01
2291185 2004 ARBOR-CIENCIA PENSAMIENTO Y CULTURA 177 (698): 285-310
Martinez JMR
Genome sequencing
00
230111116 2004 COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING 7 (4): 345-359
Bazylak G; Nagels LJ; Geise HJ
Potentiometric quasi-array employing calixarene derivatives for the high-throughput similarity/diversity screening of beta-adrenergic and beta-blocking chiral drugs by HPLC
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
23114417 2004 CURRENT OPINION IN DRUG DISCOVERY & DEVELOPMENT 7 (5): 658-664
Aparicio SAJR; Powell J
Genetic approaches to unraveling G protein-coupled receptor biology
00
2321418 2004 EJSO 30 (8): 905-906
Rew DA
The sequencing of the rat genone
00
23315735 2004 GENOME RESEARCH 14 (10B): 2010-2014
Hill DE; Brasch MA; del Campo AA; Doucette-Stamm L; Garrels JI; et al.
Academia-industry collaboration: An integral element for building "omic" resources
00
23411848 2004 IMMUNOBIOLOGY 209 (7): 559-568
Bhole D; Stahl GL
Molecular basis for complement component 6 (C6) deficiency in rats and mice
00
23516550 2004 IMMUNOGENETICS 56 (8): 585-596
Ettinger RA; Moustakas AK; Lobaton SD
Open reading frame sequencing and structure-based alignment of polypeptides encoded by RT1-Bb, RT1-Ba, RT1-Db, and RT1-Da alleles
00
2361951 2004 IMMUNOGENETICS 56 (9): 679-681
Hamann J
The EGF-TM7 family of the rat
00
23716652 2004 IMMUNOLOGY OF DIABETES III 1037: 41-58
Kutlu B; Naamane N; Berthou L; Eizirik DL
New approaches for in silico identification of cytokine-modified beta cell gene networks
00
23811858 2004 JOURNAL OF MOLECULAR EVOLUTION 59 (5): 703-708
Nekrutenko A
Identification of novel exons from rat-mouse comparisons
00
23913064 2004 MOLECULAR BRAIN RESEARCH 129 (1-2): 20-32
Tanaka T; Horikawa Y; Kawamoto T; Kabe-Sakurai N; Takeda J; et al.
Expression profile of mRNAs from rat hippocampus and its application to microarray
00
2401474 2004 NATURE BIOTECHNOLOGY 22 (5): 529-531
Kola I
Putting the rat on the map
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
24122291 2005 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 3692: 228-238
Berard S; Bergeron A; Chauve C; Paul C
Perfect sorting by reversals is not always difficult (extended abstract)
00
242514594 2005 ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS 77 (4): 627-650
Salzano FM
Evolutionary change - patterns and processes
00
24314995 2005 ANALYTICAL BIOCHEMISTRY 346 (2): 268-280
Mimaki S; Mori-Furukawa Y; Katsuno H; Kishimoto T
A transcriptional regulatory element screening system reveals a novel E2F1/pRb transcription regulation pathway
00
24412398 2005 APMIS 113 (9): 613-620
Niittymaki J; Mattila P; Renkonen R
Cloning and expression of rat fucosyltransferase VII at sites of inflammation
00
24533399 2005 AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE 45 (7-8): 1011-1016
Dalrymple BP
Harnessing the bovine genome sequence for the Australian cattle and sheep industries
00
246131103 2005 BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 1715 (2): 132-144
Yamazaki J; Okamura K; Ishibashi K; Kitamura K
Characterization of CLCA protein expressed in ductal cells of rat salivary glands
00
247123104 2005 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1728 (1-2): 34-43
Geisinger A; Alsheimer M; Baier A; Benavente R; Wettstein R
The mammalian gene pecanex 1 is differentially expressed during spermatogenesis
00
248131108 2005 BIOINFORMATICS 21: I57-I65
Brejova B; Brown DG; Li M; Vinar T
ExonHunter: a comprehensive approach to gene finding
00
249126109 2005 BIOINFORMATICS 21: I351-I358
Price AL; Jones NC; Pevzner PA
De novo identification of repeat families in large genomes
00
250130112 2005 BIOINFORMATICS 21 (17): 3461-3468
Pan XK; Stein L; Brendel V
SynBrowse: a synteny browser for comparative sequence analysis
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
251549123 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 40
Laukaitis CM; Dlouhy SR; Emes RD; Ponting CP; Karn RC
Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus
00
252133124 2005 BMC GENOMICS 6: Art. No. 11
Nalbant D; Youn H; Nalbant SI; Sharma S; Cobos E; et al.
FAM20: an evolutionarily conserved family of secreted proteins expressed in hematopoietic cells
00
253238127 2005 BMC GENOMICS 6: Art. No. 170
Smits BMG; Guryev V; Zeegers D; Wedekind D; Hedrich HJ; et al.
Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates
00
254148135 2005 CURRENT GENOMICS 6 (7): 545-549
Freudenberg J; Fu YH; Ptacek LJ
Approaching inherited disease on a genomic scale
00
255364136 2005 CURRENT GENOMICS 6 (8): 589-595
Fedorova L; Fedorov A
Puzzles of the human genome: Why do we need our introns?
00
256561137 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (6): 628-633
Adams MD
Conserved sequences and the evolution of gene regulatory signals
00
257122139 2005 DEVELOPMENTAL BRAIN RESEARCH 155 (2): 99-106
Kuwamura M; Muraguchi T; Matsui T; Ueno M; Takenaka S; et al.
Mutation at the Lmx1a locus provokes aberrant brain development in the rat
00
258121140 2005 DNA SEQUENCE 16 (2): 151-155
Osada S; Imagawa M; Nishihara T
Organization of gene structure and expression of nuclear factor 1 family in rat
00
2591340142 2005 DRUG METABOLISM REVIEWS 37 (3): 511-564
Boukouvala S; Fakis G
Arylamine N-acetyltransferases: What we learn from genes and genomes
00
260183145 2005 EXPERT REVIEW OF PROTEOMICS 2 (1): 27-39
Kislinger T; Emili A
Multidimensional protein identification technology: current status and future prospects
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
261154147 2005 FEBS JOURNAL 272 (19): 4884-4898
Mujica AO; Brauksiepe B; Saaler-Reinhardt S; Reuss S; Schmidt ER
Differential expression pattern of the novel serine/threonine kinase, STK33, in mice and men
00
262277151 2005 GENE 359: 1-17
Edelstein LC; Collins T
The SCAN domain family of zinc finger transcription
00
263226153 2005 GENE 364: 45-52
Fujii Y; Itoh T; Sakate R; Koyanagi KO; Matsuya A; et al.
A web tool for comparative genomics: G-compass
00
264149154 2005 GENETICAL RESEARCH 86 (2): 127-138
Anisimov SV
A large-scale screening of the normalized mammalian mitochondrial gene expression profiles
00
265215158 2005 GENOME BIOLOGY 6 (2): Art. No. 207
Furlong RF
Insights into vertebrate evolution from the chicken genome sequence
00
266223159 2005 GENOME BIOLOGY 6 (4): Art. No. 216
DeCerbo J; Carmichael GG
SINEs point to abundant editing in the human genome
00
267439160 2005 GENOME BIOLOGY 6 (7): Art. No. 115
Aloni R; Lancet D
Conservation anchors in the vertebrate genome
00
2686135179 2005 GENOME RESEARCH 15 (12): 1717-1728
Lazar J; Moreno C; Jacob HJ; Kwitek AE
Impact of genomics on research in the rat
00
269260181 2005 GENOME RESEARCH 15 (12): 1787-1797
Webber C; Ponting CP
Hotspots of mutation and breakage in dog and human chromosomes
00
270280182 2005 GENOME RESEARCH 15 (12): 1809-1819
Pollinger JP; Bustamante CD; Fledel-Alon A; Schmutz S; Gray MM; et al.
Selective sweep mapping of genes with large phenotypic effects
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
271128184 2005 GENOMICS 85 (3): 322-329
Koelsch BU; Rajewsky MF; Kindler-Rohrborn A
A 6-Mb contig-based comparative gene and linkage map of the rat schwannoma tumor suppressor region at 10q32.3
00
272444186 2005 GENOMICS 86 (3): 295-305
Portnoy ME; McDermott KJ; Antonellis A; Margulies EH; Prasad AB; et al.
Detection of potential GDF6 regulatory elements by multispecies sequence comparisons and identification of a skeletal joint enhancer
00
273123190 2005 GLYCOBIOLOGY 15 (6): 615-624
Hamilton SR; Li HJ; Wischnewski H; Prasad A; Kerley-Hamilton JS; et al.
Intact alpha-1,2-endomannosidase is a typical type II membrane protein
00
274438196 2005 HYPERTENSION 46 (6): 1300-1308
Charron S; Duong C; Menard A; Roy J; Eliopoulos V; et al.
Epistasis, not numbers, regulates functions of clustered Dahl rat quantitative trait loci applicable to human hypertension
00
275136197 2005 IMMUNOGENETICS 57 (10): 739-749
Rothenburg S; Haag F; Koch-Nolte F; Carter C; Graham M; et al.
Characterization of multiple alleles of the T-cell differentiation marker ART2 (RT6) in inbred and wild rats
00
276151199 2005 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 16 (6): 1057-1064
Forte A; Galderisi U; De Feo M; Quarto C; Renzulli A; et al.
Carotid arteriotomy induces different temporal gene expression profiles in normotensive and hypertensive rat strains
00
277125202 2005 JOURNAL OF ANIMAL BREEDING AND GENETICS 122: 28-35
Duchesne A; Eggen A
Radiation hybrid mapping of genes and newly identified microsatellites in candidate regions for bovine arthrogryposis-palatoschisis and progressive ataxia based on comparative data from man, mouse and rat
00
278111210 2005 JOURNAL OF HEALTH SCIENCE 51 (2): 253-256
Ohta K; Osada S; Nishikawa J; Nishihara T
Cloning and characterization of a cDNA encoding the histone acetyltransferase monocytic leukemia zinc finger protein (MOZ) in the rat
00
279125212 2005 JOURNAL OF MOLECULAR ENDOCRINOLOGY 35 (1): 1-12
Wang H; Horikawa Y; Jin L; Narita T; Yamada S; et al.
Gene expression profile in rat pancreatic islet and RINm5F cells
00
280233215 2005 JOURNAL OF VIROLOGY 79 (18): 12035-12044
Barr SD; Leipzig J; Shinn P; Ecker JR; Bushman FD
Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
281151216 2005 JOURNAL OF VIROLOGY 79 (23): 14698-14707
Cantrell MA; Ederer MM; Erickson IK; Swier VJ; Baker RJ; et al.
MysTR: an endogenous retrovirus family in mammals that is undergoing recent amplifications to unprecedented copy numbers
00
282252218 2005 MAMMALIAN GENOME 16 (6): 442-459
Chantry-Darmon U; Urien C; Hayes H; Bertaud M; Chadi-Taourit S; et al.
Construction of a cytogenetically anchored microsatellite map in rabbit
00
283235219 2005 MAMMALIAN GENOME 16 (12): 934-941
Wen GP; Ramser J; Taudien S; Gausmann U; Blechschmidt K; et al.
Validation of mRNA/EST-based gene predictions in human Xp11.4 revealed differences to the organization of the orthologous mouse locus
00
284180220 2005 MECHANISMS OF AGEING AND DEVELOPMENT 126 (6-7): 767-782
Maya-Mendoza A; Hernandez-Munoz R; Gariglio P; Aranda-Anzaldo A
Natural ageing in the rat liver correlates with progressive stabilisation of DNA-nuclear matrix interactions and withdrawal of genes from the nuclear substructure
00
285124245 2005 NEUROBIOLOGY OF LEARNING AND MEMORY 84 (1): 69-73
Hermes GL; Jacobs LF; McClintock MK
The sectored foraging field: A novel design to quantify spatial strategies, learning, memory, and emotion
00
286130254 2005 PEPTIDES 26 (10): 1835-1841
Daniels D; Suzuki A; Shapiro E; Luo LY; Yee DK; et al.
Rattus norvegicus melanocortin 3 receptor: A corrected sequence
00
287275257 2005 PHASE II CONJUGATION ENZYMES AND TRANSPORT SYSTEMS 400: 22-46
Gardner-Stephen DA; Gregory PA; Mackenzie PI
Identification and characterization of functional hepatocyte nuclear factor 1-binding sites in UDP-glucuronosyltransferase genes
00
288338261 2005 PLANT PHYSIOLOGY 138 (3): 1301-1309
Schoof H; Spannagl M; Yang L; Ernst R; Gundlach H; et al.
Munich Information Center for Protein Sequences plant genome resources. A framework for integrative and comparative analyses
00
289418264 2005 PLOS GENETICS 1 (6): 672-675
Pardi F; Goldman N
Species choice for comparative genomics: Being greedy works
00
290318270 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (19): 6639-6640
Rodriguez I
Remarkable diversity of mammalian pheromone receptor repertoires
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
291157275 2005 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 61 (4): 878-887
Ferrer-Costa C; Orozco M; de la Cruz X
Use of bioinformatics tools for the annotation of disease-associated mutations in animal models
00
292144280 2005 TOHOKU JOURNAL OF EXPERIMENTAL MEDICINE 206 (2): 163-171
Iwamoto M; Mizuiri S; Arita M; Hemmi H
Nuclear factor-kappa B activation in diabetic rat kidney: Evidence for involvement of P-selectin in diabetic nephropathy
00
2932157281 2005 TRANSGENIC RESEARCH 14 (5): 531-546
Tesson L; Cozzi J; Menoret S; Remy S; Usal C; et al.
Transgenic modifications of the rat genome
00
294228285 2006 ACTA PHYSIOLOGICA 186 (4): 301-308
Glaab T; Hecker H; Stephan M; Baelder R; Braun A; et al.
Comparison of non-invasive measures of cholinergic and allergic airway responsiveness in rats
00
2952116287 2006 ANATOMICAL RECORD PART A-DISCOVERIES IN MOLECULAR CELLULAR AND EVOLUTIONARY BIOLOGY 288A (4): 409-423
Nothwang HG; Koehl A; Friauf E
Comparative gene expression analysis reveals a characteristic molecular profile of the superior olivary complex
00
296115289 2006 APPLICATIONS OF EVOLUTIONARY COMPUTING, PROCEEDINGS 3907: 196-207
Stojanovic N
An algorithm for the automated verification of DNA supercontig assemblies
00
2971213290 2006 AUTONOMIC NEUROSCIENCE-BASIC & CLINICAL 125 (1-2): 100-115
Andrews PLR; Horn CC
Signals for nausea and emesis: Implications for models of upper gastrointestinal diseases
00
298120291 2006 BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION 34 (3): 213-220
Geisinger A; Cossio G; Wettstein R
Molecular cloning and analysis of a DNA repetitive element from the mouse genome
00
299284292 2006 BIOESSAYS 28 (5): 495-503
Popova NK
From genes to aggressive behavior: the role of serotonergic system
00
300636293 2006 BIOESSAYS 28 (6): 569-573
Lee S; Kasif S
The complete genome sequence of a dog: a perspective
00

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