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Mon Jul 31 15:49:42 2006

Rat Genome Sequencing Project Consortium
Genome sequence of the Brown Norway rat
yields insights into mammalian evolution
NATURE 428 (6982): 493-521 APR 1 2004
and the citing papers
Nodes: 353, Authors: 2563, Journals: 153, Outer References: 13847, Words: 1363
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Collection span: 2004 - 2006
View: Overview   Sorted by year, source, volume, issue, page.

Page 1 of 4: [  1  2  3  4 ]

#LCRNCRNode / Date / Journal / AuthorLCSGCS
11441 2004 ACTA PHYSIOLOGICA SCANDINAVICA 181 (4): 585-592
Cowley AW; Liang M; Roman RJ; Greene AS; Jacob HJ
Consomic rat model systems for physiological genomics
010
21472 2004 ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH 28 (11): 1622-1628
Liang TB; Habegger K; Spence JP; Foroud T; Ellison JA; et al.
Glutathione S-transferase 8-8 expression is lower in alcohol-preferring than in alcohol-nonpreferring rats
02
311933 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 15-56
Miller W; Makova KD; Nekrutenko A; Hardison RC
Comparative genomics
1131
411734 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 443-477
Borevitz JO; Ecker JR
Plant genomics: The third wave
012
51185 2004 ARBOR-CIENCIA PENSAMIENTO Y CULTURA 177 (698): 285-310
Martinez JMR
Genome sequencing
00
61486 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 321 (3): 707-715
Boutros PC; Moffat ID; Franc MA; Tijet N; Tuomisto J; et al.
Dioxin-responsive AHRE-II gene battery: identification by phylogenetic footprinting
012
71327 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 324 (2): 562-568
Tripodi G; Florio M; Ferrandi M; Modica R; Zimdahl H; et al.
Effect of Add1 gene transfer on blood pressure in reciprocal congenic strains of Milan rats
12
811158 2004 BIOESSAYS 26 (8): 833-843
Suzuki M; Hayashizaki Y
Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs
314
92319 2004 BIOESSAYS 26 (10): 1039-1042
Hancock JM
A bigger mouse? The rat genome unveiled
11
1014710 2004 BMC EVOLUTIONARY BIOLOGY 4: Art. No. 17
Pereira SL; Baker AJ
Low number of mitochondrial pseudogenes in the chicken (Gallus gallus) nuclear genome: implications for molecular inference of population history and phylogenetics
011
#LCRNCRNode / Date / Journal / AuthorLCSGCS
1116611 2004 BMC GENOMICS 5: Art. No. 62
Balciunas D; Davidson AE; Sivasubbu S; Hermanson SB; Welle Z; et al.
Enhancer trapping in zebrafish using the Sleeping Beauty transposon
014
1215612 2004 CANADIAN JOURNAL OF PHYSIOLOGY AND PHARMACOLOGY 82 (12): 1053-1060
Hunter AL; Cruz RP; Cheyne BM; McManus BM; Granville DJ
Cytochrome p450 enzymes and cardiovascular disease
02
1318113 2004 CELL 119 (7): 1027-1040
Dorus S; Vallender EJ; Evans PD; Anderson JR; Gilbert SL; et al.
Accelerated evolution of nervous system genes in the origin of Homo sapiens
438
1415714 2004 CELL COMMUNICATION AND ADHESION 11 (5-6): 155-171
Cruciani V; Heintz KM; Husoy T; Hovig E; Warren DJ; et al.
The detection of hamster connexins: A comparison of expression profiles with wild-type mouse and the cancer-prone Min mouse
01
15110615 2004 CHEMICO-BIOLOGICAL INTERACTIONS 150 (1): 53-70
Shenton JM; Chen J; Uetrecht JP
Animal models of idiosyncratic drug reactions
18
16111116 2004 COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING 7 (4): 345-359
Bazylak G; Nagels LJ; Geise HJ
Potentiometric quasi-array employing calixarene derivatives for the high-throughput similarity/diversity screening of beta-adrenergic and beta-blocking chiral drugs by HPLC
00
1714417 2004 CURRENT OPINION IN DRUG DISCOVERY & DEVELOPMENT 7 (5): 658-664
Aparicio SAJR; Powell J
Genetic approaches to unraveling G protein-coupled receptor biology
00
181418 2004 EJSO 30 (8): 905-906
Rew DA
The sequencing of the rat genone
00
1915919 2004 EUROPEAN JOURNAL OF NEUROSCIENCE 20 (12): 3244-3258
Koehl A; Schmidt N; Rieger A; Pilgram SM; Letunic I; et al.
Gene expression profiling of the rat superior olivary complex using serial analysis of gene expression
12
2019720 2004 EUROPEAN JOURNAL OF PHARMACOLOGY 500 (1-3): 385-398
Vercauteren FGG; Bergeron JJM; Vandesande F; Arckens L; Quirion R
Proteomic approaches in brain research and neuropharmacology
06
#LCRNCRNode / Date / Journal / AuthorLCSGCS
2118121 2004 EXPERT OPINION ON THERAPEUTIC TARGETS 8 (6): 587-596
Orth AP; Batalov S; Perrone M; Chanda SK
The promise of genomics to identify novel therapeutic targets
06
2214322 2004 FEBS LETTERS 573 (1-3): 214-218
Suzuki H; Okunishi R; Hashizume W; Katayama S; Ninomiya N; et al.
Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR
01
23117123 2004 FOLIA BIOLOGICA 50 (2): 43-57
Seda O
Comparative gene map of hypertriglyceridaemia
03
2413324 2004 GENE 340 (2): 303-312
Grus WE; Zhang JZ
Rapid turnover and species-specificity of vomeronasal pheromone receptor genes in mice and rats
410
2512625 2004 GENE 343 (2): 239-244
Leeb T; Muller M
Comparative human-mouse-rat sequence analysis of the ICAM gene cluster on HSA 19p13.2 and a 185-kb porcine region from SSC 2q
02
2611926 2004 GENETICS 168 (2): 1077-1080
Robertson HM
Genes encoding vitamin-K epoxide reductase are present in Drosophila and trypanosomatid protists
02
271827 2004 GENOME BIOLOGY 5 (5): Art. No. 221
Mullins LJ; Mullins JJ
Insights from the rat genome sequence
04
2814928 2004 GENOME BIOLOGY 5 (7): Art. No. R47
Huang H; Winter EE; Wang HJ; Weinstock KG; Xing HM; et al.
Evolutionary conservation and selection of human disease gene orthologs in the rat and mouse genomes
09
2915629 2004 GENOME BIOLOGY 5 (9): Art. No. R68
Miska EA; Alvarez-Saavedra E; Townsend M; Yoshii A; Sestan N; et al.
Microarray analysis of microRNA expression in the developing mammalian brain
048
3016230 2004 GENOME RESEARCH 14 (5): 802-811
Castillo-Davis CI; Kondrashov FA; Hartl DL; Kulathinal RJ
The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint
112
#LCRNCRNode / Date / Journal / AuthorLCSGCS
3112731 2004 GENOME RESEARCH 14 (5): 976-987
Eyras E; Caccamo M; Curwen V; Clamp M
ESTGenes: Alternative splicing from ESTs in Ensembl
317
3217532 2004 GENOME RESEARCH 14 (8): 1516-1529
Emes RD; Riley MC; Laukaitis CM; Goodstadt L; Karn RC; et al.
Comparative evolutionary genomics of androgen-binding protein genes
14
3312233 2004 GENOME RESEARCH 14 (8): 1610-1616
Ogurtsov AY; Sunyaev S; Kondrashov AS
Indel-based evolutionary distance and mouse-human divergence
16
3418534 2004 GENOME RESEARCH 14 (10B): 2001-2009
Brasch MA; Hartley JL; Vidal M
ORFeome cloning and systems biology: Standardized mass production of the parts from the parts-list
016
3515735 2004 GENOME RESEARCH 14 (10B): 2010-2014
Hill DE; Brasch MA; del Campo AA; Doucette-Stamm L; Garrels JI; et al.
Academia-industry collaboration: An integral element for building "omic" resources
00
3613336 2004 GENOME RESEARCH 14 (10B): 2121-2127
Gerhard DS; Wagner L; Feingold EA; Shenmen CM; Grouse LH; et al.
The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)
527
3713937 2004 GENOME RESEARCH 14 (10B): 2128-2135
Rual JF; Hirozane-Kishikawa T; Hao T; Bertin N; Li SM; et al.
Human ORFeome version 1.1: A platform for reverse proteomics
112
3816238 2004 GENOME RESEARCH 14 (10A): 1851-1860
Zhao SY; Shetty J; Hou LH; Delcher A; Zhu BL; et al.
Human, mouse, and rat genome large-scale rearrangements: Stability versus speciation
49
3925039 2004 GENOME RESEARCH 14 (11): 2235-2244
Blakesley RW; Hansen NF; Mullikin JC; Thomas PJ; McDowell JC; et al.
An intermediate grade of finished genomic sequence suitable for comparative analyses
610
4027740 2004 GENOME RESEARCH 14 (12): 2412-2423
Blanchette M; Green ED; Miller W; Haussler D
Reconstructing large regions of an ancestral mammalian genome in silico
211
#LCRNCRNode / Date / Journal / AuthorLCSGCS
4113941 2004 GENOME RESEARCH 14 (12): 2439-2447
Abe K; Noguchi H; Tagawa K; Yuzuriha M; Toyoda A; et al.
Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence-SKIP analysis
25
4212542 2004 GENOMICS 84 (5): 785-795
Zhang FK; Zhao ZM
The influence of neighboring-nucleotide composition on single nucleotide polymorphisms (SNPs) in the mouse genome and its comparison with human SNPs
03
4313843 2004 GENOMICS 84 (5): 806-813
Smith NGC; Brandstrom M; Ellegren H
Evidence for turnover of functional noncoding DNA in mammalian genome evolution
37
4414444 2004 GENOMICS 84 (5): 814-823
Mortlock DP; Portnoy ME; Chandler RL; Green ED
Comparative sequence analysis of the Gdf6 locus reveals a duplicon-mediated chromosomal rearrangement in rodents and rapidly diverging coding and regulatory sequences
13
4511345 2004 GENOMICS 84 (5): 867-875
Yamashita T; Honda M; Takatori H; Nishino R; Hoshino N; et al.
Genome-wide transcriptome mapping analysis identifies organ-specific gene expression patterns along human chromosomes
06
4613846 2004 GENOMICS 84 (6): 1051-1059
Pall GS; Wallis J; Axton R; Brownstein DG; Gautier P; et al.
A novel transmembrane MSP-containing protein that plays a role in right ventricle development
02
4713347 2004 HYPERTENSION 44 (5): 695-701
Bilusic M; Bataillard A; Tschannen MR; Gao L; Barreto NE; et al.
Mapping the genetic determinants of hypertension, metabolic diseases, and related phenotypes in the lyon hypertensive rat
24
4811848 2004 IMMUNOBIOLOGY 209 (7): 559-568
Bhole D; Stahl GL
Molecular basis for complement component 6 (C6) deficiency in rats and mice
00
4915949 2004 IMMUNOGENETICS 56 (5): 343-354
Hao L; Nei M
Genomic organization and evolutionary analysis of Ly49 genes encoding the rodent natural killer cell receptors: rapid evolution by repeated gene duplication
312
5016550 2004 IMMUNOGENETICS 56 (8): 585-596
Ettinger RA; Moustakas AK; Lobaton SD
Open reading frame sequencing and structure-based alignment of polypeptides encoded by RT1-Bb, RT1-Ba, RT1-Db, and RT1-Da alleles
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
511951 2004 IMMUNOGENETICS 56 (9): 679-681
Hamann J
The EGF-TM7 family of the rat
00
5216652 2004 IMMUNOLOGY OF DIABETES III 1037: 41-58
Kutlu B; Naamane N; Berthou L; Eizirik DL
New approaches for in silico identification of cytokine-modified beta cell gene networks
00
5314753 2004 INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE 45 (11): 3955-3963
Torrado M; Senatorov VV; Trivedi R; Fariss RN; Tomarev SI
Pdlim2, a novel PDZ-LIM domain protein, interacts with alpha-actinins and filamin A
02
5416554 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (25): 26627-26634
Quesada C; Sanchez LM; Alvarez J; Lopez-Otin C
Identification and characterization of human and mouse ovastacin - A novel metalloproteinase similar to hatching enzymes from arthropods, birds, amphibians, and fish
02
5513155 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (53): 56014-56023
Streb JW; Kitchen CM; Gelman IH; Miano JM
Multiple promoters direct expression of three AKAP12 isoforms with distinct subcellular and tissue distribution profiles
04
56113856 2004 JOURNAL OF COMPARATIVE NEUROLOGY 476 (2): 186-201
Schoenfeld TA; Knott TK
Evidence for the disproportionate mapping of olfactory airspace onto the main olfactory bulb of the hamster
15
5713957 2004 JOURNAL OF HYPERTENSION 22 (8): 1461-1464
Bianchi G; Tripodi G; Manunta P
Na+, kidney, hypertension and genes: lessons from rats
01
5811858 2004 JOURNAL OF MOLECULAR EVOLUTION 59 (5): 703-708
Nekrutenko A
Identification of novel exons from rat-mouse comparisons
00
5916859 2004 JOURNAL OF NEUROSCIENCE 24 (23): 5410-5419
Cirelli C; Tononi G
Locus ceruleus control of state-dependent gene expression
012
6012260 2004 MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 17 (3-6): 353-358
Behr VC; Weber T; Neuberger T; Vroemen M; Weidner N; et al.
High-resolution MR imaging of the rat spinal cord in vivo in a wide-bore magnet at 17.6 Tesla
03
#LCRNCRNode / Date / Journal / AuthorLCSGCS
6117061 2004 MAMMALIAN GENOME 15 (11): 887-900
Stover CM; Lynch NJ; Hanson SJ; Windbichler M; Gregory SG; et al.
Organization of the MASP2 locus and its expression profile in mouse and rat
02
6212962 2004 MECHANISMS OF DEVELOPMENT 121 (7-8): 903-913
Khorasani MZ; Hennig S; Imre G; Asakawa S; Palczewski S; et al.
A first generation physical map of the medaka genome in BACs essential for positional cloning and clone-by-clone based genomic sequencing
09
6318163 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (10): 1923-1937
Bertrand W; Brunet FG; Escriva H; Parmentier G; Laudet V; et al.
Evolutionary genomics of nuclear receptors: From twenty-five ancestral genes to derived endocrine systems
011
6413064 2004 MOLECULAR BRAIN RESEARCH 129 (1-2): 20-32
Tanaka T; Horikawa Y; Kawamoto T; Kabe-Sakurai N; Takeda J; et al.
Expression profile of mRNAs from rat hippocampus and its application to microarray
00
6516065 2004 MOLECULAR THERAPY 10 (2): 344-354
Nicol CG; Graham D; Miller WH; White SJ; Smith TAG; et al.
Effect of adenovirus serotype 5 fiber and penton modifications on in vivo tropism in rats
011
66022666 2004 NATURE 428 (6982): 493-521
Gibbs RA; Weinstock GM; Metzker ML; Muzny DM; Sodergren EJ; et al.
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
352352
6712567 2004 NATURE 429 (6991): 558-562
Bazykin GA; Kondrashov FA; Ogurtsov AY; Sunyaev S; Kondrashov AS
Positive selection at sites of multiple amino acid replacements since rat-mouse divergence
05
6812368 2004 NATURE 431 (7011): 927-930
She XW; Jiang ZX; Clark RL; Liu G; Cheng Z; et al.
Shotgun sequence assembly and recent segmental duplications within the human genome
437
6915769 2004 NATURE 431 (7011): 946-957
Jaillon O; Aury JM; Brunet F; Petit JL; Stange-Thomann N; et al.
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
13122
7022870 2004 NATURE 431 (7011): 988-993
Nobrega MA; Zhu YW; Plajzer-Frick I; Afzal V; Rubin EM
Megabase deletions of gene deserts result in viable mice
725
#LCRNCRNode / Date / Journal / AuthorLCSGCS
71316571 2004 NATURE 432 (7018): 695-716
Hillier LW; Miller W; Birney E; Warren W; Hardison RC; et al.
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
40201
7221972 2004 NATURE 432 (7018): 761-764
Wallis JW; Aerts J; Groenen MAM; Crooijmans RPMA; Layman D; et al.
A physical map of the chicken genome
127
7334873 2004 NATURE 432 (7020): 988-994
Martin J; Han C; Gordon LA; Terry A; Prabhakar S; et al.
The sequence and analysis of duplication-rich human chromosome 16
211
741474 2004 NATURE BIOTECHNOLOGY 22 (5): 529-531
Kola I
Putting the rat on the map
00
7511075 2004 NATURE GENETICS 36 (5): 441-442
Wallace CA; Aitman TJ
The rat comes clean
11
7612676 2004 NATURE NEUROSCIENCE 7 (11): 1175-1179
Crabbe JC; Morris RGM
Festina lente: Late-night thoughts on high-throughput screening of mouse behavior
06
77113477 2004 NATURE REVIEWS GENETICS 5 (6): 435-445
Ellegren H
Microsatellites: Simple sequences with complex evolution
140
7815878 2004 NATURE REVIEWS GENETICS 5 (8): 578-U1
Meyers BC; Scalabrin S; Morgante M
Mapping and sequencing complex genomes: Let's get physical!
113
7913479 2004 NUCLEIC ACIDS RESEARCH 32: W273-W279
Frazer KA; Pachter L; Poliakov A; Rubin EM; Dubchak I
VISTA: computational tools for comparative genomics
022
8013580 2004 OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 8 (4): 289-305
Hunt E; Hanlon N; Leader DP; Bryce H; Dominiczak AF
The visual language of synteny
11
#LCRNCRNode / Date / Journal / AuthorLCSGCS
8113981 2004 PHYSIOLOGICAL GENOMICS 19 (1): 1-10
Wallace KJ; Wallis RH; Collins SC; Argoud K; Kaisaki PJ; et al.
Quantitative trait locus dissection in congenic strains of the Goto-Kakizaki rat identifies a region conserved with diabetes loci in human chromosome 1q
07
8215482 2004 PHYSIOLOGICAL GENOMICS 20 (1): 117-130
da Silva R; Lucchinetti E; Pasch T; Schaub MC; Zaugg M
Ischemic but not pharmacological preconditioning elicits a gene expression profile similar to unprotected myocardium
04
8315183 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (39): 13994-14001
Hwang DG; Green P
Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution
622
8414884 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (47): 16543-16548
Ain R; Dai GL; Dunmore JH; Godwin AR; Soares MJ
A prolactin family paralog regulates reproductive adaptations to a physiological stressor
16
8513785 2004 SCIENCE 304 (5675): 1321-1325
Bejerano G; Pheasant M; Makunin I; Stephen S; Kent WJ; et al.
Ultraconserved elements in the human genome
27124
8632886 2004 SCIENCE 306 (5296): 636-640
Feingold EA; Good PJ; Guyer MS; Kamholz S; Liefer L; et al.
The ENCODE (ENCyclopedia of DNA elements) Project
1394
8716487 2004 TOXICOLOGY 202 (1-2): 21-32
Plant N
Interaction networks: coordinating responses to xenobiotic exposure
04
8812788 2004 TRENDS IN GENETICS 20 (11): 563-569
Itoh N; Ornitz DM
Evolution of the Fgf and Fgfr gene families
049
8918689 2004 TRENDS IN GENETICS 20 (12): 631-639
Murphy WJ; Pevzner PA; O'Brien SJ
Mammalian phylogenomics comes of age
424
9011990 2005 ACTA PHARMACOLOGICA SINICA 26 (8): 959-962
Zhan LS; Guan YF; Su DF; Miao CY
Blood pressure variability and baroreflex sensitivity are not different in spontaneously hypertensive rats and stroke-prone spontaneously hypertensive rats
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
9122291 2005 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 3692: 228-238
Berard S; Bergeron A; Chauve C; Paul C
Perfect sorting by reversals is not always difficult (extended abstract)
00
9214792 2005 AMERICAN JOURNAL OF PATHOLOGY 166 (5): 1427-1439
Sebbane F; Gardner D; Long D; Gowen BB; Hinnebusch BJ
Kinetics of disease progression and host response in a rat model of bubonic plague
05
9318493 2005 AMERICAN JOURNAL OF PHARMACOGENOMICS 5 (1): 53-62
Penny MA; McHale D
Pharmacogenomics and the drug discovery pipeline - When should it be implemented?
06
94514594 2005 ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS 77 (4): 627-650
Salzano FM
Evolutionary change - patterns and processes
00
9514995 2005 ANALYTICAL BIOCHEMISTRY 346 (2): 268-280
Mimaki S; Mori-Furukawa Y; Katsuno H; Kishimoto T
A transcriptional regulatory element screening system reveals a novel E2F1/pRb transcription regulation pathway
00
96610296 2005 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 6: 143-164
Stone EA; Cooper GM; Sidow A
Trade-offs in detecting evolutionarily constrained sequence by comparative genomics
03
97511797 2005 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 6: 381-406
Giallourakis C; Henson C; Reich M; Xie XH; Mootha VK
Disease gene discovery through integrative genomics
01
9812398 2005 APMIS 113 (9): 613-620
Niittymaki J; Mattila P; Renkonen R
Cloning and expression of rat fucosyltransferase VII at sites of inflammation
00
9933399 2005 AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE 45 (7-8): 1011-1016
Dalrymple BP
Harnessing the bovine genome sequence for the Australian cattle and sheep industries
00
100140100 2005 BIOCHEMICAL JOURNAL 389: 577-585
Ban N; Sasaki M; Sakai H; Ueda K; Inagaki N
Cloning of ABCA17, a novel rodent sperm-specific ABC (ATP-binding cassette) transporter that regulates intracellular lipid metabolism
02

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