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Mon Jul 31 15:49:44 2006

Rat Genome Sequencing Project Consortium
Genome sequence of the Brown Norway rat
yields insights into mammalian evolution
NATURE 428 (6982): 493-521 APR 1 2004
and the citing papers
Nodes: 353, Authors: 2563, Journals: 153, Outer References: 13847, Words: 1363
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by first author.

Page 1 of 4: [  1  2  3  4 ]

#LCRNCRNode / Date / Journal / AuthorLCSGCS
113941 2004 GENOME RESEARCH 14 (12): 2439-2447
Abe K; Noguchi H; Tagawa K; Yuzuriha M; Toyoda A; et al.
Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence-SKIP analysis
25
2138165 2005 GENOME RESEARCH 15 (1): 111-119
Abril JF; Castelo R; Guigo R
Comparison of splice sites in mammals and chicken
01
31155246 2005 NEURON 48 (3): 417-430
Ache BW; Young JM
Olfaction: Diverse species, conserved principles
03
4561137 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (6): 628-633
Adams MD
Conserved sequences and the evolution of gene regulatory signals
00
514884 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (47): 16543-16548
Ain R; Dai GL; Dunmore JH; Godwin AR; Soares MJ
A prolactin family paralog regulates reproductive adaptations to a physiological stressor
16
6439160 2005 GENOME BIOLOGY 6 (7): Art. No. 115
Aloni R; Lancet D
Conservation anchors in the vertebrate genome
00
7229237 2005 NATURE 437 (7062): 1149-1152
Andolfatto P
Adaptive evolution of non-coding DNA in Drosophila
015
81213290 2006 AUTONOMIC NEUROSCIENCE-BASIC & CLINICAL 125 (1-2): 100-115
Andrews PLR; Horn CC
Signals for nausea and emesis: Implications for models of upper gastrointestinal diseases
00
9149154 2005 GENETICAL RESEARCH 86 (2): 127-138
Anisimov SV
A large-scale screening of the normalized mammalian mitochondrial gene expression profiles
00
1014417 2004 CURRENT OPINION IN DRUG DISCOVERY & DEVELOPMENT 7 (5): 658-664
Aparicio SAJR; Powell J
Genetic approaches to unraveling G protein-coupled receptor biology
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
11145208 2005 JOURNAL OF CELLULAR BIOCHEMISTRY 94 (5): 890-898
Arnosti DN; Kulkarni MM
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
01
12155342 2006 ONCOLOGY REPORTS 15 (5): 1241-1248
Asada K; Asada R; Yoshiji H; Fukui H; Floyd RA; et al.
DNA cytosine methylation profile in various cancer-related genes is altered in cultured rat hepatocyte cell lines as compared with primary hepatocytes
00
1316611 2004 BMC GENOMICS 5: Art. No. 62
Balciunas D; Davidson AE; Sivasubbu S; Hermanson SB; Welle Z; et al.
Enhancer trapping in zebrafish using the Sleeping Beauty transposon
014
14140100 2005 BIOCHEMICAL JOURNAL 389: 577-585
Ban N; Sasaki M; Sakai H; Ueda K; Inagaki N
Cloning of ABCA17, a novel rodent sperm-specific ABC (ATP-binding cassette) transporter that regulates intracellular lipid metabolism
02
15177106 2005 BIOESSAYS 27 (8): 839-848
Barbazuk WB; Bedell JA; Rabinowicz PD
Reduced representation sequencing: a success in maize and a promise for other plant genomes
01
16233215 2005 JOURNAL OF VIROLOGY 79 (18): 12035-12044
Barr SD; Leipzig J; Shinn P; Ecker JR; Bushman FD
Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome
00
17277128 2005 BRIEFINGS IN BIOINFORMATICS 6 (1): 6-22
Batzoglou S
The many faces of sequence alignment
25
1812567 2004 NATURE 429 (6991): 558-562
Bazykin GA; Kondrashov FA; Ogurtsov AY; Sunyaev S; Kondrashov AS
Positive selection at sites of multiple amino acid replacements since rat-mouse divergence
05
19111116 2004 COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING 7 (4): 345-359
Bazylak G; Nagels LJ; Geise HJ
Potentiometric quasi-array employing calixarene derivatives for the high-throughput similarity/diversity screening of beta-adrenergic and beta-blocking chiral drugs by HPLC
00
2012260 2004 MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 17 (3-6): 353-358
Behr VC; Weber T; Neuberger T; Vroemen M; Weidner N; et al.
High-resolution MR imaging of the rat spinal cord in vivo in a wide-bore magnet at 17.6 Tesla
03
#LCRNCRNode / Date / Journal / AuthorLCSGCS
2113785 2004 SCIENCE 304 (5675): 1321-1325
Bejerano G; Pheasant M; Makunin I; Stephen S; Kent WJ; et al.
Ultraconserved elements in the human genome
27124
2222291 2005 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 3692: 228-238
Berard S; Bergeron A; Chauve C; Paul C
Perfect sorting by reversals is not always difficult (extended abstract)
00
23118133 2005 COMPARATIVE GENOMICS 3388: 1-14
Berard S; Bergeron A; Chauve C
Conservation of combinatorial structures in evolution scenarios
12
2418163 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (10): 1923-1937
Bertrand W; Brunet FG; Escriva H; Parmentier G; Laudet V; et al.
Evolutionary genomics of nuclear receptors: From twenty-five ancestral genes to derived endocrine systems
011
2511848 2004 IMMUNOBIOLOGY 209 (7): 559-568
Bhole D; Stahl GL
Molecular basis for complement component 6 (C6) deficiency in rats and mice
00
2613957 2004 JOURNAL OF HYPERTENSION 22 (8): 1461-1464
Bianchi G; Tripodi G; Manunta P
Na+, kidney, hypertension and genes: lessons from rats
01
2713347 2004 HYPERTENSION 44 (5): 695-701
Bilusic M; Bataillard A; Tschannen MR; Gao L; Barreto NE; et al.
Mapping the genetic determinants of hypertension, metabolic diseases, and related phenotypes in the lyon hypertensive rat
24
28137114 2005 BIOLOGY OF REPRODUCTION 73 (2): 297-307
Blackshear PJ; Phillips RS; Ghosh S; Ramos SVB; Richfield EK; et al.
Zfp36l3, a rodent X chromosome gene encoding a placenta-specific member of the tristetraprolin family of CCCH tandem zinc finger proteins
02
29175116 2005 BMC BIOINFORMATICS 6: Art. No. 53
Blair JE; Shah P; Hedges SB
Evolutionary sequence analysis of complete eukaryote genomes
04
303121228 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (11): 2275-2284
Blair JE; Hedges SB
Molecular phylogeny and divergence times of deuterostome animals
07
#LCRNCRNode / Date / Journal / AuthorLCSGCS
3125039 2004 GENOME RESEARCH 14 (11): 2235-2244
Blakesley RW; Hansen NF; Mullikin JC; Thomas PJ; McDowell JC; et al.
An intermediate grade of finished genomic sequence suitable for comparative analyses
610
3227740 2004 GENOME RESEARCH 14 (12): 2412-2423
Blanchette M; Green ED; Miller W; Haussler D
Reconstructing large regions of an ancestral mammalian genome in silico
211
33364313 2006 GENOME BIOLOGY 7 (5): Art. No. R43
Blomme T; Vandepoele K; De Bodt S; Simillion C; Maere S; et al.
The gain and loss of genes during 600 million years of vertebrate evolution
00
34232252 2005 NUCLEIC ACIDS RESEARCH 33: D505-D510
Boccia A; Petrillo M; di Bernardo D; Guffanti A; Mignone F; et al.
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes
02
3511734 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 443-477
Borevitz JO; Ecker JR
Plant genomics: The third wave
012
361340142 2005 DRUG METABOLISM REVIEWS 37 (3): 511-564
Boukouvala S; Fakis G
Arylamine N-acetyltransferases: What we learn from genes and genomes
00
37128164 2005 GENOME RESEARCH 15 (1): 98-110
Bourque G; Zdobnov EM; Bork P; Pevzner PA; Tesler G
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
123
381486 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 321 (3): 707-715
Boutros PC; Moffat ID; Franc MA; Tijet N; Tuomisto J; et al.
Dioxin-responsive AHRE-II gene battery: identification by phylogenetic footprinting
012
3918534 2004 GENOME RESEARCH 14 (10B): 2001-2009
Brasch MA; Hartley JL; Vidal M
ORFeome cloning and systems biology: Standardized mass production of the parts from the parts-list
016
40131108 2005 BIOINFORMATICS 21: I57-I65
Brejova B; Brown DG; Li M; Vinar T
ExonHunter: a comprehensive approach to gene finding
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
41470180 2005 GENOME RESEARCH 15 (12): 1777-1786
Brent MR
Genome annotation past, present, and future: How to define an ORF at each locus
11
42139205 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (3): 1953-1961
Cal S; Quesada V; Llamazares M; Diaz-Perales A; Garabaya C; et al.
Human polyserase-2, a novel enzyme with three tandem serine protease domains in a single polypeptide chain
01
43151216 2005 JOURNAL OF VIROLOGY 79 (23): 14698-14707
Cantrell MA; Ederer MM; Erickson IK; Swier VJ; Baker RJ; et al.
MysTR: an endogenous retrovirus family in mammals that is undergoing recent amplifications to unprecedented copy numbers
00
4416230 2004 GENOME RESEARCH 14 (5): 802-811
Castillo-Davis CI; Kondrashov FA; Hartl DL; Kulathinal RJ
The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint
112
45136201 2005 INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE 46 (6): 2140-2146
Chalberg TW; Genise HL; Vollrath D; Calos MP
phi C31 integrase confers genomic integration and long-term transgene expression in rat retina
04
46252218 2005 MAMMALIAN GENOME 16 (6): 442-459
Chantry-Darmon U; Urien C; Hayes H; Bertaud M; Chadi-Taourit S; et al.
Construction of a cytogenetically anchored microsatellite map in rabbit
00
47438196 2005 HYPERTENSION 46 (6): 1300-1308
Charron S; Duong C; Menard A; Roy J; Eliopoulos V; et al.
Epistasis, not numbers, regulates functions of clustered Dahl rat quantitative trait loci applicable to human hypertension
00
48349296 2006 BMC BIOINFORMATICS 7: Art. No. 136
Chen FC; Chen CJ; Ho JY; Chuang TJ
Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat
00
49467333 2006 MOLECULAR BIOLOGY AND EVOLUTION 23 (3): 675-682
Chen FC; Wang SS; Chen CJ; Li WH; Chuang TJ
Alternatively and constitutively spliced exons are subject to different evolutionary forces
02
50150183 2005 GENOMICS 85 (2): 208-220
Cho S; Beintema JJ; Zhang JZ
The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories
16
#LCRNCRNode / Date / Journal / AuthorLCSGCS
5116859 2004 JOURNAL OF NEUROSCIENCE 24 (23): 5410-5419
Cirelli C; Tononi G
Locus ceruleus control of state-dependent gene expression
012
523133284 2005 TRENDS IN GENETICS 21 (12): 673-682
Coghlan A; Eichler EE; Oliver SG; Paterson AH; Stein L
Chromosome evolution in eukaryotes: a multi-kingdom perspective
01
53663169 2005 GENOME RESEARCH 15 (7): 901-913
Cooper GM; Stone EA; Asimenos G; Green ED; Batzoglou S; et al.
Distribution and intensity of constraint in mammalian genomic sequence
28
541441 2004 ACTA PHYSIOLOGICA SCANDINAVICA 181 (4): 585-592
Cowley AW; Liang M; Roman RJ; Greene AS; Jacob HJ
Consomic rat model systems for physiological genomics
010
5512676 2004 NATURE NEUROSCIENCE 7 (11): 1175-1179
Crabbe JC; Morris RGM
Festina lente: Late-night thoughts on high-throughput screening of mouse behavior
06
5615714 2004 CELL COMMUNICATION AND ADHESION 11 (5-6): 155-171
Cruciani V; Heintz KM; Husoy T; Hovig E; Warren DJ; et al.
The detection of hamster connexins: A comparison of expression profiles with wild-type mouse and the cancer-prone Min mouse
01
57120328 2006 JOURNAL OF THE ROYAL SOCIETY INTERFACE 3 (7): 345-349
Crutchfield JP; Gornerup O
Objects that make objects: the population dynamics of structural complexity
00
5815482 2004 PHYSIOLOGICAL GENOMICS 20 (1): 117-130
da Silva R; Lucchinetti E; Pasch T; Schaub MC; Zaugg M
Ischemic but not pharmacological preconditioning elicits a gene expression profile similar to unprotected myocardium
04
5933399 2005 AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE 45 (7-8): 1011-1016
Dalrymple BP
Harnessing the bovine genome sequence for the Australian cattle and sheep industries
00
60130254 2005 PEPTIDES 26 (10): 1835-1841
Daniels D; Suzuki A; Shapiro E; Luo LY; Yee DK; et al.
Rattus norvegicus melanocortin 3 receptor: A corrected sequence
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
61241310 2006 GENES & DEVELOPMENT 20 (10): 1365-1377
Davey MG; Paton IR; Yin Y; Schmidt M; Bangs FK; et al.
The chicken talpid(3) gene encodes a novel protein essential for Hedgehog signaling
00
62159294 2006 BIOMATERIALS 27 (9): 1851-1858
de Boer J; van Blitterswijk C; Lowik C
Bioluminescent imaging: Emerging technology for non-invasive imaging of bone tissue engineering
00
63128250 2005 NUCLEIC ACIDS RESEARCH 33: D485-D491
de la Cruz N; Bromberg S; Pasko D; Shimoyama M; Twigger S; et al.
The Rat Genome Database (RGD): developments towards a phenome database
04
64223159 2005 GENOME BIOLOGY 6 (4): Art. No. 216
DeCerbo J; Carmichael GG
SINEs point to abundant editing in the human genome
00
65637321 2006 HUMAN MOLECULAR GENETICS 15: R51-R56
Dewey CN; Pachter L
Evolution at the nucleotide level: the problem of multiple whole-genome alignment
00
66121349 2006 PULMONARY PHARMACOLOGY & THERAPEUTICS 19 (1): 70-73
Di Nicolantonio R; Kostka V; Kwitek A; Jacob H; Thomas WG; et al.
Fine mapping of Lvm1: a quantitative trait locus controlling heart size independently of blood pressure
00
6718113 2004 CELL 119 (7): 1027-1040
Dorus S; Vallender EJ; Evans PD; Anderson JR; Gilbert SL; et al.
Accelerated evolution of nervous system genes in the origin of Homo sapiens
438
68125202 2005 JOURNAL OF ANIMAL BREEDING AND GENETICS 122: 28-35
Duchesne A; Eggen A
Radiation hybrid mapping of genes and newly identified microsatellites in candidate regions for bovine arthrogryposis-palatoschisis and progressive ataxia based on comparative data from man, mouse and rat
00
69128193 2005 HYPERTENSION 45 (4): 557-564
Dutil J; Eliopoulos V; Tremblay J; Hamet P; Charron S; et al.
Multiple quantitative trait loci for blood pressure interacting epistatically and additively on Dahl rat chromosome 2
24
70277151 2005 GENE 359: 1-17
Edelstein LC; Collins T
The SCAN domain family of zinc finger transcription
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
71130283 2005 TRENDS IN GENETICS 21 (2): 77-81
Eisenberg E; Nemzer S; Kinar Y; Sorek R; Rechavi G; et al.
Is abundant A-to-I RNA editing primate-specific?
210
72113477 2004 NATURE REVIEWS GENETICS 5 (6): 435-445
Ellegren H
Microsatellites: Simple sequences with complex evolution
140
73468282 2005 TRENDS IN ECOLOGY & EVOLUTION 20 (4): 180-186
Ellegren H
The avian genome uncovered
03
7417532 2004 GENOME RESEARCH 14 (8): 1516-1529
Emes RD; Riley MC; Laukaitis CM; Goodstadt L; Karn RC; et al.
Comparative evolutionary genomics of androgen-binding protein genes
14
75316107 2005 BIOFUTUR (254): 24-28
Esnault Y; Jaillon O; Aury JM; Weissenbach J; Crollius HR
Tetraodon, fish in the genomic model
01
7616550 2004 IMMUNOGENETICS 56 (8): 585-596
Ettinger RA; Moustakas AK; Lobaton SD
Open reading frame sequencing and structure-based alignment of polypeptides encoded by RT1-Bb, RT1-Ba, RT1-Db, and RT1-Da alleles
00
77222274 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (51): 18526-18531
Everts-van der Wind A; Larkin DM; Green CA; Elliott JS; Olmstead CA; et al.
A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution
12
7812731 2004 GENOME RESEARCH 14 (5): 976-987
Eyras E; Caccamo M; Curwen V; Clamp M
ESTGenes: Alternative splicing from ESTs in Ensembl
317
79333117 2005 BMC BIOINFORMATICS 6: Art. No. 131
Eyras E; Reymond A; Castelo R; Bye JM; Camara F; et al.
Gene finding in the chicken genome
02
80365334 2006 MOLECULAR BIOLOGY AND EVOLUTION 23 (5): 927-940
Ezawa K; OOta S; Saitou N
Genome-wide search of gene conversions in duplicated genes of mouse and rat
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
81142115 2005 BMC BIOINFORMATICS 6: Art. No. S6
Fang H; Tong W; Perkins R; Shi L; Hong H; et al.
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling
01
82364136 2005 CURRENT GENOMICS 6 (8): 589-595
Fedorova L; Fedorov A
Puzzles of the human genome: Why do we need our introns?
00
8332886 2004 SCIENCE 306 (5296): 636-640
Feingold EA; Good PJ; Guyer MS; Kamholz S; Liefer L; et al.
The ENCODE (ENCyclopedia of DNA elements) Project
1394
84197325 2006 JOURNAL OF INTEGRATIVE PLANT BIOLOGY 48 (1): 5-14
Feng CP; Mundy J
Gene discovery and functional analyses in the model plant Arabidopsis
00
85157275 2005 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 61 (4): 878-887
Ferrer-Costa C; Orozco M; de la Cruz X
Use of bioinformatics tools for the annotation of disease-associated mutations in animal models
00
86150163 2005 GENOME RESEARCH 15 (1): 54-66
Florea L; Di Francesco V; Miller J; Turner R; Yao A; et al.
Gene and alternative splicing annotation with AIR
03
87151199 2005 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 16 (6): 1057-1064
Forte A; Galderisi U; De Feo M; Quarto C; Renzulli A; et al.
Carotid arteriotomy induces different temporal gene expression profiles in normotensive and hypertensive rat strains
00
8813479 2004 NUCLEIC ACIDS RESEARCH 32: W273-W279
Frazer KA; Pachter L; Poliakov A; Rubin EM; Dubchak I
VISTA: computational tools for comparative genomics
022
89148135 2005 CURRENT GENOMICS 6 (7): 545-549
Freudenberg J; Fu YH; Ptacek LJ
Approaching inherited disease on a genomic scale
00
9016286 2006 ANATOMICAL RECORD PART A-DISCOVERIES IN MOLECULAR CELLULAR AND EVOLUTIONARY BIOLOGY 288A (4): 326-330
Friedland DR
Structure and function in the auditory system: From cochlea to cortex
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
91226153 2005 GENE 364: 45-52
Fujii Y; Itoh T; Sakate R; Koyanagi KO; Matsuya A; et al.
A web tool for comparative genomics: G-compass
00
92152272 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (26): 9230-9234
Fukami-Kobayashi K; Shiina T; Anzai T; Sano K; Yamazaki M; et al.
Genomic evolution of MHC class I region in primates
04
93215158 2005 GENOME BIOLOGY 6 (2): Art. No. 207
Furlong RF
Insights into vertebrate evolution from the chicken genome sequence
00
94249172 2005 GENOME RESEARCH 15 (8): 1086-1094
Gaffney DJ; Keightley PD
The scale of mutational variation in the murid genome
02
95275257 2005 PHASE II CONJUGATION ENZYMES AND TRANSPORT SYSTEMS 400: 22-46
Gardner-Stephen DA; Gregory PA; Mackenzie PI
Identification and characterization of functional hepatocyte nuclear factor 1-binding sites in UDP-glucuronosyltransferase genes
00
96133192 2005 HYPERTENSION 45 (3): 451-459
Garrett MR; Meng HJ; Rapp JP; Joe B
Locating a blood pressure quantitative trait locus within 117 kb on the rat genome - Substitution mapping and renal expression analysis
38
97111306 2006 DIABETOLOGIA 49 (3): 431-433
Gauguier D
Diabetes quantitative trait locus research: from physiology to genetics and back
00
98142311 2006 GENETICS 172 (1): 425-436
Gautier M; Barcelona RR; Fritz S; Grohs C; Druet T; et al.
Fine mapping and physical characterization of two linked quantitative trait loci affecting milk fat yield in dairy cattle on BTA26
01
99123104 2005 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1728 (1-2): 34-43
Geisinger A; Alsheimer M; Baier A; Benavente R; Wettstein R
The mammalian gene pecanex 1 is differentially expressed during spermatogenesis
00
100120291 2006 BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION 34 (3): 213-220
Geisinger A; Cossio G; Wettstein R
Molecular cloning and analysis of a DNA repetitive element from the mouse genome
00

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