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Mon Jul 31 15:49:44 2006

Rat Genome Sequencing Project Consortium
Genome sequence of the Brown Norway rat
yields insights into mammalian evolution
NATURE 428 (6982): 493-521 APR 1 2004
and the citing papers
Nodes: 353, Authors: 2563, Journals: 153, Outer References: 13847, Words: 1363
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by LCS.

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#LCRNCRNode / Date / Journal / AuthorLCSGCS
10118534 2004 GENOME RESEARCH 14 (10B): 2001-2009
Brasch MA; Hartley JL; Vidal M
ORFeome cloning and systems biology: Standardized mass production of the parts from the parts-list
016
10215735 2004 GENOME RESEARCH 14 (10B): 2010-2014
Hill DE; Brasch MA; del Campo AA; Doucette-Stamm L; Garrels JI; et al.
Academia-industry collaboration: An integral element for building "omic" resources
00
10312542 2004 GENOMICS 84 (5): 785-795
Zhang FK; Zhao ZM
The influence of neighboring-nucleotide composition on single nucleotide polymorphisms (SNPs) in the mouse genome and its comparison with human SNPs
03
10411345 2004 GENOMICS 84 (5): 867-875
Yamashita T; Honda M; Takatori H; Nishino R; Hoshino N; et al.
Genome-wide transcriptome mapping analysis identifies organ-specific gene expression patterns along human chromosomes
06
10513846 2004 GENOMICS 84 (6): 1051-1059
Pall GS; Wallis J; Axton R; Brownstein DG; Gautier P; et al.
A novel transmembrane MSP-containing protein that plays a role in right ventricle development
02
10611848 2004 IMMUNOBIOLOGY 209 (7): 559-568
Bhole D; Stahl GL
Molecular basis for complement component 6 (C6) deficiency in rats and mice
00
10716550 2004 IMMUNOGENETICS 56 (8): 585-596
Ettinger RA; Moustakas AK; Lobaton SD
Open reading frame sequencing and structure-based alignment of polypeptides encoded by RT1-Bb, RT1-Ba, RT1-Db, and RT1-Da alleles
00
1081951 2004 IMMUNOGENETICS 56 (9): 679-681
Hamann J
The EGF-TM7 family of the rat
00
10916652 2004 IMMUNOLOGY OF DIABETES III 1037: 41-58
Kutlu B; Naamane N; Berthou L; Eizirik DL
New approaches for in silico identification of cytokine-modified beta cell gene networks
00
11014753 2004 INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE 45 (11): 3955-3963
Torrado M; Senatorov VV; Trivedi R; Fariss RN; Tomarev SI
Pdlim2, a novel PDZ-LIM domain protein, interacts with alpha-actinins and filamin A
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
11116554 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (25): 26627-26634
Quesada C; Sanchez LM; Alvarez J; Lopez-Otin C
Identification and characterization of human and mouse ovastacin - A novel metalloproteinase similar to hatching enzymes from arthropods, birds, amphibians, and fish
02
11213155 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (53): 56014-56023
Streb JW; Kitchen CM; Gelman IH; Miano JM
Multiple promoters direct expression of three AKAP12 isoforms with distinct subcellular and tissue distribution profiles
04
11313957 2004 JOURNAL OF HYPERTENSION 22 (8): 1461-1464
Bianchi G; Tripodi G; Manunta P
Na+, kidney, hypertension and genes: lessons from rats
01
11411858 2004 JOURNAL OF MOLECULAR EVOLUTION 59 (5): 703-708
Nekrutenko A
Identification of novel exons from rat-mouse comparisons
00
11516859 2004 JOURNAL OF NEUROSCIENCE 24 (23): 5410-5419
Cirelli C; Tononi G
Locus ceruleus control of state-dependent gene expression
012
11612260 2004 MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 17 (3-6): 353-358
Behr VC; Weber T; Neuberger T; Vroemen M; Weidner N; et al.
High-resolution MR imaging of the rat spinal cord in vivo in a wide-bore magnet at 17.6 Tesla
03
11717061 2004 MAMMALIAN GENOME 15 (11): 887-900
Stover CM; Lynch NJ; Hanson SJ; Windbichler M; Gregory SG; et al.
Organization of the MASP2 locus and its expression profile in mouse and rat
02
11812962 2004 MECHANISMS OF DEVELOPMENT 121 (7-8): 903-913
Khorasani MZ; Hennig S; Imre G; Asakawa S; Palczewski S; et al.
A first generation physical map of the medaka genome in BACs essential for positional cloning and clone-by-clone based genomic sequencing
09
11918163 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (10): 1923-1937
Bertrand W; Brunet FG; Escriva H; Parmentier G; Laudet V; et al.
Evolutionary genomics of nuclear receptors: From twenty-five ancestral genes to derived endocrine systems
011
12013064 2004 MOLECULAR BRAIN RESEARCH 129 (1-2): 20-32
Tanaka T; Horikawa Y; Kawamoto T; Kabe-Sakurai N; Takeda J; et al.
Expression profile of mRNAs from rat hippocampus and its application to microarray
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
12116065 2004 MOLECULAR THERAPY 10 (2): 344-354
Nicol CG; Graham D; Miller WH; White SJ; Smith TAG; et al.
Effect of adenovirus serotype 5 fiber and penton modifications on in vivo tropism in rats
011
12212567 2004 NATURE 429 (6991): 558-562
Bazykin GA; Kondrashov FA; Ogurtsov AY; Sunyaev S; Kondrashov AS
Positive selection at sites of multiple amino acid replacements since rat-mouse divergence
05
1231474 2004 NATURE BIOTECHNOLOGY 22 (5): 529-531
Kola I
Putting the rat on the map
00
12412676 2004 NATURE NEUROSCIENCE 7 (11): 1175-1179
Crabbe JC; Morris RGM
Festina lente: Late-night thoughts on high-throughput screening of mouse behavior
06
12513479 2004 NUCLEIC ACIDS RESEARCH 32: W273-W279
Frazer KA; Pachter L; Poliakov A; Rubin EM; Dubchak I
VISTA: computational tools for comparative genomics
022
12613981 2004 PHYSIOLOGICAL GENOMICS 19 (1): 1-10
Wallace KJ; Wallis RH; Collins SC; Argoud K; Kaisaki PJ; et al.
Quantitative trait locus dissection in congenic strains of the Goto-Kakizaki rat identifies a region conserved with diabetes loci in human chromosome 1q
07
12715482 2004 PHYSIOLOGICAL GENOMICS 20 (1): 117-130
da Silva R; Lucchinetti E; Pasch T; Schaub MC; Zaugg M
Ischemic but not pharmacological preconditioning elicits a gene expression profile similar to unprotected myocardium
04
12816487 2004 TOXICOLOGY 202 (1-2): 21-32
Plant N
Interaction networks: coordinating responses to xenobiotic exposure
04
12912788 2004 TRENDS IN GENETICS 20 (11): 563-569
Itoh N; Ornitz DM
Evolution of the Fgf and Fgfr gene families
049
13011990 2005 ACTA PHARMACOLOGICA SINICA 26 (8): 959-962
Zhan LS; Guan YF; Su DF; Miao CY
Blood pressure variability and baroreflex sensitivity are not different in spontaneously hypertensive rats and stroke-prone spontaneously hypertensive rats
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
13122291 2005 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 3692: 228-238
Berard S; Bergeron A; Chauve C; Paul C
Perfect sorting by reversals is not always difficult (extended abstract)
00
13214792 2005 AMERICAN JOURNAL OF PATHOLOGY 166 (5): 1427-1439
Sebbane F; Gardner D; Long D; Gowen BB; Hinnebusch BJ
Kinetics of disease progression and host response in a rat model of bubonic plague
05
13318493 2005 AMERICAN JOURNAL OF PHARMACOGENOMICS 5 (1): 53-62
Penny MA; McHale D
Pharmacogenomics and the drug discovery pipeline - When should it be implemented?
06
134514594 2005 ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS 77 (4): 627-650
Salzano FM
Evolutionary change - patterns and processes
00
13514995 2005 ANALYTICAL BIOCHEMISTRY 346 (2): 268-280
Mimaki S; Mori-Furukawa Y; Katsuno H; Kishimoto T
A transcriptional regulatory element screening system reveals a novel E2F1/pRb transcription regulation pathway
00
136610296 2005 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 6: 143-164
Stone EA; Cooper GM; Sidow A
Trade-offs in detecting evolutionarily constrained sequence by comparative genomics
03
137511797 2005 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 6: 381-406
Giallourakis C; Henson C; Reich M; Xie XH; Mootha VK
Disease gene discovery through integrative genomics
01
13812398 2005 APMIS 113 (9): 613-620
Niittymaki J; Mattila P; Renkonen R
Cloning and expression of rat fucosyltransferase VII at sites of inflammation
00
13933399 2005 AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE 45 (7-8): 1011-1016
Dalrymple BP
Harnessing the bovine genome sequence for the Australian cattle and sheep industries
00
140140100 2005 BIOCHEMICAL JOURNAL 389: 577-585
Ban N; Sasaki M; Sakai H; Ueda K; Inagaki N
Cloning of ABCA17, a novel rodent sperm-specific ABC (ATP-binding cassette) transporter that regulates intracellular lipid metabolism
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
141154101 2005 BIOCHEMICAL JOURNAL 390: 115-123
Sandy J; Mushtaq A; Holton SJ; Schartau P; Noble MEM; et al.
Investigation of the catalytic triad of arylamine N-acetyltransferases: essential residues required for acetyl transfer to arylamines
01
142119102 2005 BIOCHEMICAL SOCIETY TRANSACTIONS 33: 331-334
Puente XS; Sanchez LM; Gutierrez-Fernandez A; Velasco G; Lopez-Otin C
A genomic view of the complexity of mammalian proteolytic systems
03
143131103 2005 BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 1715 (2): 132-144
Yamazaki J; Okamura K; Ishibashi K; Kitamura K
Characterization of CLCA protein expressed in ductal cells of rat salivary glands
00
144123104 2005 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1728 (1-2): 34-43
Geisinger A; Alsheimer M; Baier A; Benavente R; Wettstein R
The mammalian gene pecanex 1 is differentially expressed during spermatogenesis
00
145185105 2005 BIOESSAYS 27 (8): 775-784
Han JS; Boeke JD
LINEA retrotransposons: modulators of quantity and quality of mammalian gene expression?
04
146177106 2005 BIOESSAYS 27 (8): 839-848
Barbazuk WB; Bedell JA; Rabinowicz PD
Reduced representation sequencing: a success in maize and a promise for other plant genomes
01
147316107 2005 BIOFUTUR (254): 24-28
Esnault Y; Jaillon O; Aury JM; Weissenbach J; Crollius HR
Tetraodon, fish in the genomic model
01
148131108 2005 BIOINFORMATICS 21: I57-I65
Brejova B; Brown DG; Li M; Vinar T
ExonHunter: a comprehensive approach to gene finding
00
149126109 2005 BIOINFORMATICS 21: I351-I358
Price AL; Jones NC; Pevzner PA
De novo identification of repeat families in large genomes
00
150236110 2005 BIOINFORMATICS 21 (6): 703-710
Zheng XH; Lu F; Wang ZY; Hoover J; Mural R
Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs
03
#LCRNCRNode / Date / Journal / AuthorLCSGCS
151122111 2005 BIOINFORMATICS 21 (9): 1789-1796
Stepanova M; Tiazhelova T; Skoblov M; Baranova A
A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas
02
152130112 2005 BIOINFORMATICS 21 (17): 3461-3468
Pan XK; Stein L; Brendel V
SynBrowse: a synteny browser for comparative sequence analysis
00
153129113 2005 BIOLOGY OF REPRODUCTION 72 (2): 284-292
Iwamoto Y; Kaneko T; Ichinose J; Mori T; Shibata Y; et al.
Molecular cloning of rat Spetex2 family genes mapped on chromosome 15p16, encoding a 23-kilodalton protein associated with the plasma membranes of haploid spermatids
01
154137114 2005 BIOLOGY OF REPRODUCTION 73 (2): 297-307
Blackshear PJ; Phillips RS; Ghosh S; Ramos SVB; Richfield EK; et al.
Zfp36l3, a rodent X chromosome gene encoding a placenta-specific member of the tristetraprolin family of CCCH tandem zinc finger proteins
02
155142115 2005 BMC BIOINFORMATICS 6: Art. No. S6
Fang H; Tong W; Perkins R; Shi L; Hong H; et al.
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling
01
156175116 2005 BMC BIOINFORMATICS 6: Art. No. 53
Blair JE; Shah P; Hedges SB
Evolutionary sequence analysis of complete eukaryote genomes
04
157333117 2005 BMC BIOINFORMATICS 6: Art. No. 131
Eyras E; Reymond A; Castelo R; Bye JM; Camara F; et al.
Gene finding in the chicken genome
02
158137118 2005 BMC BIOINFORMATICS 6: Art. No. 175
Rouchka EC; Khalyfa A; Cooper NGF
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
01
159157119 2005 BMC BIOINFORMATICS 6: Art. No. 278
Rosenberg MS
Multiple sequence alignment accuracy and evolutionary distance estimation
01
160249120 2005 BMC BIOLOGY 3: Art. No. 2
Jorgensen FG; Hobolth A; Hornshoj H; Bendixen C; Fredholm M; et al.
Comparative analysis of protein coding sequences from human, mouse and the domesticated pig
04
#LCRNCRNode / Date / Journal / AuthorLCSGCS
161142121 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 32
Semple CAM; Maxwell A; Gautier P; Kilanowski FM; Eastwood H; et al.
The complexity of selection at the major primate beta-defensin locus
03
162147122 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 39
McLellan AS; Zimmermann W; Moore T
Conservation of pregnancy-specific glycoprotein (PSG) N domains following independent expansions of the gene families in rodents and primates
02
163549123 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 40
Laukaitis CM; Dlouhy SR; Emes RD; Ponting CP; Karn RC
Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus
00
164133124 2005 BMC GENOMICS 6: Art. No. 11
Nalbant D; Youn H; Nalbant SI; Sharma S; Cobos E; et al.
FAM20: an evolutionarily conserved family of secreted proteins expressed in hematopoietic cells
00
165322125 2005 BMC GENOMICS 6: Art. No. 70
Wernersson R; Schierup MH; Jorgensen FG; Gorodkin J; Panitz F; et al.
Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing
010
166357126 2005 BMC GENOMICS 6: Art. No. 139
Otto H; Reche PA; Bazan F; Dittmar K; Haag F; et al.
In silico characterization of the family of PARP-like poly(ADP-ribosyl) transferases (pARTs)
02
167238127 2005 BMC GENOMICS 6: Art. No. 170
Smits BMG; Guryev V; Zeegers D; Wedekind D; Hedrich HJ; et al.
Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates
00
168279130 2005 CHEMICAL RESEARCH IN TOXICOLOGY 18 (3): 403-414
Hayes KR; Bradfield RA
Advances in toxicogenomics
07
169125131 2005 CHROMOSOME RESEARCH 13 (7): 707-715
Jiang ZH; Michal JJ; Melville JS; Baltzer HL
Multi-alignment of orthologous genome regions in five species provides new insights into the evolutionary make-up of mammalian genomes
01
170126132 2005 CIRCULATION RESEARCH 97 (3): 210-218
Kaneda R; Ueno S; Yamashita Y; Choi YL; Koinuma K; et al.
Genome-wide screening for target regions of histone deacetylases in cardiomyocytes
03
#LCRNCRNode / Date / Journal / AuthorLCSGCS
171196134 2005 COMPUTATIONAL BIOLOGY AND CHEMISTRY 29 (1): 1-12
Makalowska I; Lin CF; Makalowski W
Overlapping genes in vertebrate genomes
05
172148135 2005 CURRENT GENOMICS 6 (7): 545-549
Freudenberg J; Fu YH; Ptacek LJ
Approaching inherited disease on a genomic scale
00
173364136 2005 CURRENT GENOMICS 6 (8): 589-595
Fedorova L; Fedorov A
Puzzles of the human genome: Why do we need our introns?
00
174561137 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (6): 628-633
Adams MD
Conserved sequences and the evolution of gene regulatory signals
00
175246138 2005 CURRENT OPINION IN LIPIDOLOGY 16 (2): 179-191
Herrera VLM; Ruiz-Opazo N
Genetic studies in rat models: insights into cardiovascular disease
01
176122139 2005 DEVELOPMENTAL BRAIN RESEARCH 155 (2): 99-106
Kuwamura M; Muraguchi T; Matsui T; Ueno M; Takenaka S; et al.
Mutation at the Lmx1a locus provokes aberrant brain development in the rat
00
177121140 2005 DNA SEQUENCE 16 (2): 151-155
Osada S; Imagawa M; Nishihara T
Organization of gene structure and expression of nuclear factor 1 family in rat
00
1781109141 2005 DRUG METABOLISM REVIEWS 37 (2): 279-310
Wishart DS
Bioinformatics in drug development and assessment
01
1791340142 2005 DRUG METABOLISM REVIEWS 37 (3): 511-564
Boukouvala S; Fakis G
Arylamine N-acetyltransferases: What we learn from genes and genomes
00
180243144 2005 EUROPEAN JOURNAL OF IMMUNOLOGY 35 (1): 261-272
Nylenna O; Naper C; Vaage JT; Woon PY; Gauguier D; et al.
The genes and gene organization of the Ly49 region of the rat natural killer cell gene complex
05
#LCRNCRNode / Date / Journal / AuthorLCSGCS
181183145 2005 EXPERT REVIEW OF PROTEOMICS 2 (1): 27-39
Kislinger T; Emili A
Multidimensional protein identification technology: current status and future prospects
00
1821145146 2005 FASEB JOURNAL 19 (12): 1602-1616
Mutch DM; Wahli W; Williamson G
Nutrigenomics and nutrigenetics: the emerging faces of nutrition
04
183154147 2005 FEBS JOURNAL 272 (19): 4884-4898
Mujica AO; Brauksiepe B; Saaler-Reinhardt S; Reuss S; Schmidt ER
Differential expression pattern of the novel serine/threonine kinase, STK33, in mice and men
00
184133148 2005 GENE 345 (1): 113-118
Hancock JM; Simon M
Simple sequence repeats in proteins and their significance for network evolution
01
185115149 2005 GENE 346: 23-28
Niimura Y; Nei M
Evolutionary changes of the number of olfactory receptor genes in the human and mouse lineages
05
186130150 2005 GENE 346: 51-61
Santini S; Bernardi G
Organization and base composition of tilapia Hox genes: implications for the evolution of Hox clusters in fish
03
187277151 2005 GENE 359: 1-17
Edelstein LC; Collins T
The SCAN domain family of zinc finger transcription
00
188242152 2005 GENE 363: 51-60
Makarova JA; Kramerov DA
Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay
01
189226153 2005 GENE 364: 45-52
Fujii Y; Itoh T; Sakate R; Koyanagi KO; Matsuya A; et al.
A web tool for comparative genomics: G-compass
00
190149154 2005 GENETICAL RESEARCH 86 (2): 127-138
Anisimov SV
A large-scale screening of the normalized mammalian mitochondrial gene expression profiles
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
191147155 2005 GENETICS 169 (4): 2179-2188
Wu Q
Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes
01
192184157 2005 GENETICS 171 (3): 1161-1171
Smith JJ; Kump DK; Walker JA; Parichy DM; Voss SR
A comprehensive expressed sequence tag linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in ambystoma
01
193215158 2005 GENOME BIOLOGY 6 (2): Art. No. 207
Furlong RF
Insights into vertebrate evolution from the chicken genome sequence
00
194223159 2005 GENOME BIOLOGY 6 (4): Art. No. 216
DeCerbo J; Carmichael GG
SINEs point to abundant editing in the human genome
00
195439160 2005 GENOME BIOLOGY 6 (7): Art. No. 115
Aloni R; Lancet D
Conservation anchors in the vertebrate genome
00
196259161 2005 GENOME BIOLOGY 6 (8): Art. No. r67
Haddrill PR; Charlesworth B; Halligan DL; Andolfatto P
Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content
09
197142162 2005 GENOME BIOLOGY 6 (10): Art. No. R83
Quignon P; Giraud M; Rimbault M; Lavigne P; Tacher S; et al.
The dog and rat olfactory receptor repertoires
02
198150163 2005 GENOME RESEARCH 15 (1): 54-66
Florea L; Di Francesco V; Miller J; Turner R; Yao A; et al.
Gene and alternative splicing annotation with AIR
03
199138165 2005 GENOME RESEARCH 15 (1): 111-119
Abril JF; Castelo R; Guigo R
Comparison of splice sites in mammals and chicken
01
200144167 2005 GENOME RESEARCH 15 (1): 166-173
Kellner WA; Sullivan RT; Carlson BH; Thomas JW
Uprobe: A genome-wide universal probe resource for comparative physical mapping in vertebrates
01

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