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Mon Jul 31 15:49:43 2006

Rat Genome Sequencing Project Consortium
Genome sequence of the Brown Norway rat
yields insights into mammalian evolution
NATURE 428 (6982): 493-521 APR 1 2004
and the citing papers
Nodes: 353, Authors: 2563, Journals: 153, Outer References: 13847, Words: 1363
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by LCR.

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#LCRNCRNode / Date / Journal / AuthorLCSGCS
20115769 2004 NATURE 431 (7011): 946-957
Jaillon O; Aury JM; Brunet F; Petit JL; Stange-Thomann N; et al.
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
13122
2021474 2004 NATURE BIOTECHNOLOGY 22 (5): 529-531
Kola I
Putting the rat on the map
00
20311075 2004 NATURE GENETICS 36 (5): 441-442
Wallace CA; Aitman TJ
The rat comes clean
11
20412676 2004 NATURE NEUROSCIENCE 7 (11): 1175-1179
Crabbe JC; Morris RGM
Festina lente: Late-night thoughts on high-throughput screening of mouse behavior
06
205113477 2004 NATURE REVIEWS GENETICS 5 (6): 435-445
Ellegren H
Microsatellites: Simple sequences with complex evolution
140
20615878 2004 NATURE REVIEWS GENETICS 5 (8): 578-U1
Meyers BC; Scalabrin S; Morgante M
Mapping and sequencing complex genomes: Let's get physical!
113
20713479 2004 NUCLEIC ACIDS RESEARCH 32: W273-W279
Frazer KA; Pachter L; Poliakov A; Rubin EM; Dubchak I
VISTA: computational tools for comparative genomics
022
20813580 2004 OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 8 (4): 289-305
Hunt E; Hanlon N; Leader DP; Bryce H; Dominiczak AF
The visual language of synteny
11
20913981 2004 PHYSIOLOGICAL GENOMICS 19 (1): 1-10
Wallace KJ; Wallis RH; Collins SC; Argoud K; Kaisaki PJ; et al.
Quantitative trait locus dissection in congenic strains of the Goto-Kakizaki rat identifies a region conserved with diabetes loci in human chromosome 1q
07
21015482 2004 PHYSIOLOGICAL GENOMICS 20 (1): 117-130
da Silva R; Lucchinetti E; Pasch T; Schaub MC; Zaugg M
Ischemic but not pharmacological preconditioning elicits a gene expression profile similar to unprotected myocardium
04
#LCRNCRNode / Date / Journal / AuthorLCSGCS
21115183 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (39): 13994-14001
Hwang DG; Green P
Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution
622
21214884 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (47): 16543-16548
Ain R; Dai GL; Dunmore JH; Godwin AR; Soares MJ
A prolactin family paralog regulates reproductive adaptations to a physiological stressor
16
21313785 2004 SCIENCE 304 (5675): 1321-1325
Bejerano G; Pheasant M; Makunin I; Stephen S; Kent WJ; et al.
Ultraconserved elements in the human genome
27124
21416487 2004 TOXICOLOGY 202 (1-2): 21-32
Plant N
Interaction networks: coordinating responses to xenobiotic exposure
04
21512788 2004 TRENDS IN GENETICS 20 (11): 563-569
Itoh N; Ornitz DM
Evolution of the Fgf and Fgfr gene families
049
21618689 2004 TRENDS IN GENETICS 20 (12): 631-639
Murphy WJ; Pevzner PA; O'Brien SJ
Mammalian phylogenomics comes of age
424
21711990 2005 ACTA PHARMACOLOGICA SINICA 26 (8): 959-962
Zhan LS; Guan YF; Su DF; Miao CY
Blood pressure variability and baroreflex sensitivity are not different in spontaneously hypertensive rats and stroke-prone spontaneously hypertensive rats
02
21814792 2005 AMERICAN JOURNAL OF PATHOLOGY 166 (5): 1427-1439
Sebbane F; Gardner D; Long D; Gowen BB; Hinnebusch BJ
Kinetics of disease progression and host response in a rat model of bubonic plague
05
21918493 2005 AMERICAN JOURNAL OF PHARMACOGENOMICS 5 (1): 53-62
Penny MA; McHale D
Pharmacogenomics and the drug discovery pipeline - When should it be implemented?
06
22014995 2005 ANALYTICAL BIOCHEMISTRY 346 (2): 268-280
Mimaki S; Mori-Furukawa Y; Katsuno H; Kishimoto T
A transcriptional regulatory element screening system reveals a novel E2F1/pRb transcription regulation pathway
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
22112398 2005 APMIS 113 (9): 613-620
Niittymaki J; Mattila P; Renkonen R
Cloning and expression of rat fucosyltransferase VII at sites of inflammation
00
222140100 2005 BIOCHEMICAL JOURNAL 389: 577-585
Ban N; Sasaki M; Sakai H; Ueda K; Inagaki N
Cloning of ABCA17, a novel rodent sperm-specific ABC (ATP-binding cassette) transporter that regulates intracellular lipid metabolism
02
223154101 2005 BIOCHEMICAL JOURNAL 390: 115-123
Sandy J; Mushtaq A; Holton SJ; Schartau P; Noble MEM; et al.
Investigation of the catalytic triad of arylamine N-acetyltransferases: essential residues required for acetyl transfer to arylamines
01
224119102 2005 BIOCHEMICAL SOCIETY TRANSACTIONS 33: 331-334
Puente XS; Sanchez LM; Gutierrez-Fernandez A; Velasco G; Lopez-Otin C
A genomic view of the complexity of mammalian proteolytic systems
03
225131103 2005 BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 1715 (2): 132-144
Yamazaki J; Okamura K; Ishibashi K; Kitamura K
Characterization of CLCA protein expressed in ductal cells of rat salivary glands
00
226123104 2005 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1728 (1-2): 34-43
Geisinger A; Alsheimer M; Baier A; Benavente R; Wettstein R
The mammalian gene pecanex 1 is differentially expressed during spermatogenesis
00
227185105 2005 BIOESSAYS 27 (8): 775-784
Han JS; Boeke JD
LINEA retrotransposons: modulators of quantity and quality of mammalian gene expression?
04
228177106 2005 BIOESSAYS 27 (8): 839-848
Barbazuk WB; Bedell JA; Rabinowicz PD
Reduced representation sequencing: a success in maize and a promise for other plant genomes
01
229131108 2005 BIOINFORMATICS 21: I57-I65
Brejova B; Brown DG; Li M; Vinar T
ExonHunter: a comprehensive approach to gene finding
00
230126109 2005 BIOINFORMATICS 21: I351-I358
Price AL; Jones NC; Pevzner PA
De novo identification of repeat families in large genomes
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
231122111 2005 BIOINFORMATICS 21 (9): 1789-1796
Stepanova M; Tiazhelova T; Skoblov M; Baranova A
A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas
02
232130112 2005 BIOINFORMATICS 21 (17): 3461-3468
Pan XK; Stein L; Brendel V
SynBrowse: a synteny browser for comparative sequence analysis
00
233129113 2005 BIOLOGY OF REPRODUCTION 72 (2): 284-292
Iwamoto Y; Kaneko T; Ichinose J; Mori T; Shibata Y; et al.
Molecular cloning of rat Spetex2 family genes mapped on chromosome 15p16, encoding a 23-kilodalton protein associated with the plasma membranes of haploid spermatids
01
234137114 2005 BIOLOGY OF REPRODUCTION 73 (2): 297-307
Blackshear PJ; Phillips RS; Ghosh S; Ramos SVB; Richfield EK; et al.
Zfp36l3, a rodent X chromosome gene encoding a placenta-specific member of the tristetraprolin family of CCCH tandem zinc finger proteins
02
235142115 2005 BMC BIOINFORMATICS 6: Art. No. S6
Fang H; Tong W; Perkins R; Shi L; Hong H; et al.
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling
01
236175116 2005 BMC BIOINFORMATICS 6: Art. No. 53
Blair JE; Shah P; Hedges SB
Evolutionary sequence analysis of complete eukaryote genomes
04
237137118 2005 BMC BIOINFORMATICS 6: Art. No. 175
Rouchka EC; Khalyfa A; Cooper NGF
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
01
238157119 2005 BMC BIOINFORMATICS 6: Art. No. 278
Rosenberg MS
Multiple sequence alignment accuracy and evolutionary distance estimation
01
239142121 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 32
Semple CAM; Maxwell A; Gautier P; Kilanowski FM; Eastwood H; et al.
The complexity of selection at the major primate beta-defensin locus
03
240147122 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 39
McLellan AS; Zimmermann W; Moore T
Conservation of pregnancy-specific glycoprotein (PSG) N domains following independent expansions of the gene families in rodents and primates
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
241133124 2005 BMC GENOMICS 6: Art. No. 11
Nalbant D; Youn H; Nalbant SI; Sharma S; Cobos E; et al.
FAM20: an evolutionarily conserved family of secreted proteins expressed in hematopoietic cells
00
242125131 2005 CHROMOSOME RESEARCH 13 (7): 707-715
Jiang ZH; Michal JJ; Melville JS; Baltzer HL
Multi-alignment of orthologous genome regions in five species provides new insights into the evolutionary make-up of mammalian genomes
01
243126132 2005 CIRCULATION RESEARCH 97 (3): 210-218
Kaneda R; Ueno S; Yamashita Y; Choi YL; Koinuma K; et al.
Genome-wide screening for target regions of histone deacetylases in cardiomyocytes
03
244118133 2005 COMPARATIVE GENOMICS 3388: 1-14
Berard S; Bergeron A; Chauve C
Conservation of combinatorial structures in evolution scenarios
12
245196134 2005 COMPUTATIONAL BIOLOGY AND CHEMISTRY 29 (1): 1-12
Makalowska I; Lin CF; Makalowski W
Overlapping genes in vertebrate genomes
05
246148135 2005 CURRENT GENOMICS 6 (7): 545-549
Freudenberg J; Fu YH; Ptacek LJ
Approaching inherited disease on a genomic scale
00
247122139 2005 DEVELOPMENTAL BRAIN RESEARCH 155 (2): 99-106
Kuwamura M; Muraguchi T; Matsui T; Ueno M; Takenaka S; et al.
Mutation at the Lmx1a locus provokes aberrant brain development in the rat
00
248121140 2005 DNA SEQUENCE 16 (2): 151-155
Osada S; Imagawa M; Nishihara T
Organization of gene structure and expression of nuclear factor 1 family in rat
00
2491109141 2005 DRUG METABOLISM REVIEWS 37 (2): 279-310
Wishart DS
Bioinformatics in drug development and assessment
01
2501340142 2005 DRUG METABOLISM REVIEWS 37 (3): 511-564
Boukouvala S; Fakis G
Arylamine N-acetyltransferases: What we learn from genes and genomes
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
251152143 2005 ENDOCRINOLOGY 146 (1): 406-413
Ueta Y; Fujihara H; Serino R; Dayanithi G; Ozawa H; et al.
Transgenic expression of enhanced green fluorescent protein enables direct visualization for physiological studies of vasopressin neurons and isolated nerve terminals of the rat
13
252183145 2005 EXPERT REVIEW OF PROTEOMICS 2 (1): 27-39
Kislinger T; Emili A
Multidimensional protein identification technology: current status and future prospects
00
2531145146 2005 FASEB JOURNAL 19 (12): 1602-1616
Mutch DM; Wahli W; Williamson G
Nutrigenomics and nutrigenetics: the emerging faces of nutrition
04
254154147 2005 FEBS JOURNAL 272 (19): 4884-4898
Mujica AO; Brauksiepe B; Saaler-Reinhardt S; Reuss S; Schmidt ER
Differential expression pattern of the novel serine/threonine kinase, STK33, in mice and men
00
255133148 2005 GENE 345 (1): 113-118
Hancock JM; Simon M
Simple sequence repeats in proteins and their significance for network evolution
01
256115149 2005 GENE 346: 23-28
Niimura Y; Nei M
Evolutionary changes of the number of olfactory receptor genes in the human and mouse lineages
05
257130150 2005 GENE 346: 51-61
Santini S; Bernardi G
Organization and base composition of tilapia Hox genes: implications for the evolution of Hox clusters in fish
03
258149154 2005 GENETICAL RESEARCH 86 (2): 127-138
Anisimov SV
A large-scale screening of the normalized mammalian mitochondrial gene expression profiles
00
259147155 2005 GENETICS 169 (4): 2179-2188
Wu Q
Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes
01
260144156 2005 GENETICS 170 (4): 1887-1896
Smits BMG; Peters TA; Mul JD; Croes HJ; Fransen JAM; et al.
Identification of a rat model for usher syndrome type 1B by N-ethyl-N-nitrosourea mutagenesis-driven forward genetics
11
#LCRNCRNode / Date / Journal / AuthorLCSGCS
261184157 2005 GENETICS 171 (3): 1161-1171
Smith JJ; Kump DK; Walker JA; Parichy DM; Voss SR
A comprehensive expressed sequence tag linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in ambystoma
01
262142162 2005 GENOME BIOLOGY 6 (10): Art. No. R83
Quignon P; Giraud M; Rimbault M; Lavigne P; Tacher S; et al.
The dog and rat olfactory receptor repertoires
02
263150163 2005 GENOME RESEARCH 15 (1): 54-66
Florea L; Di Francesco V; Miller J; Turner R; Yao A; et al.
Gene and alternative splicing annotation with AIR
03
264128164 2005 GENOME RESEARCH 15 (1): 98-110
Bourque G; Zdobnov EM; Bork P; Pevzner PA; Tesler G
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages
123
265138165 2005 GENOME RESEARCH 15 (1): 111-119
Abril JF; Castelo R; Guigo R
Comparison of splice sites in mammals and chicken
01
266144167 2005 GENOME RESEARCH 15 (1): 166-173
Kellner WA; Sullivan RT; Carlson BH; Thomas JW
Uprobe: A genome-wide universal probe resource for comparative physical mapping in vertebrates
01
267135168 2005 GENOME RESEARCH 15 (2): 292-301
Milosavljevic A; Harris RA; Sodergren EJ; Jackson AR; Kalafus KJ; et al.
Pooled genomic indexing of rhesus macaque
01
268121173 2005 GENOME RESEARCH 15 (8): 1127-1135
Vinson JP; Jaffe DB; O'Neill K; Karlsson EK; Stange-Thomann N; et al.
Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
07
269152174 2005 GENOME RESEARCH 15 (8): 1136-1144
Harada JN; Bower KE; Orth AP; Callaway S; Nelson CG; et al.
Identification of novel mammalian growth regulatory factors by genome-scale quantitative image analysis
13
270149175 2005 GENOME RESEARCH 15 (9): 1243-1249
van de Lagemaat LN; Gagnier L; Medstrand P; Mager DL
Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates
03
#LCRNCRNode / Date / Journal / AuthorLCSGCS
271140176 2005 GENOME RESEARCH 15 (9): 1258-1264
Wang W; Zheng HK; Yang S; Yu HJ; Li J; et al.
Origin and evolution of new exons in rodents
03
272150183 2005 GENOMICS 85 (2): 208-220
Cho S; Beintema JJ; Zhang JZ
The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories
16
273128184 2005 GENOMICS 85 (3): 322-329
Koelsch BU; Rajewsky MF; Kindler-Rohrborn A
A 6-Mb contig-based comparative gene and linkage map of the rat schwannoma tumor suppressor region at 10q32.3
00
274133185 2005 GENOMICS 86 (3): 271-279
Tsuji AB; Sugyo A; Ogiu T; Sagara M; Kimura T; et al.
Fine mapping of radiation susceptibility and gene expression analysis of LEC congenic rat lines
13
275123190 2005 GLYCOBIOLOGY 15 (6): 615-624
Hamilton SR; Li HJ; Wischnewski H; Prasad A; Kerley-Hamilton JS; et al.
Intact alpha-1,2-endomannosidase is a typical type II membrane protein
00
276133192 2005 HYPERTENSION 45 (3): 451-459
Garrett MR; Meng HJ; Rapp JP; Joe B
Locating a blood pressure quantitative trait locus within 117 kb on the rat genome - Substitution mapping and renal expression analysis
38
277128193 2005 HYPERTENSION 45 (4): 557-564
Dutil J; Eliopoulos V; Tremblay J; Hamet P; Charron S; et al.
Multiple quantitative trait loci for blood pressure interacting epistatically and additively on Dahl rat chromosome 2
24
278135194 2005 HYPERTENSION 45 (4): 786-792
McBride MW; Brosnan MJ; Mathers J; McLellan LI; Miller WH; et al.
Reduction of Gstm1 expression in the stroke-prone spontaneously hypertension rat contributes to increased oxidative stress
15
279129195 2005 HYPERTENSION 45 (5): 947-953
Iwai N; Yasui N; Naraba H; Tago N; Yamawaki H; et al.
Klk1 as one of the genes contributing to hypertension in Dahl salt-sensitive rat
01
280136197 2005 IMMUNOGENETICS 57 (10): 739-749
Rothenburg S; Haag F; Koch-Nolte F; Carter C; Graham M; et al.
Characterization of multiple alleles of the T-cell differentiation marker ART2 (RT6) in inbred and wild rats
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
281144198 2005 INTEGRATIVE AND COMPARATIVE BIOLOGY 45 (3): 405-415
Koch LG; Britton SL
Divergent selection for aerobic capacity in rats as a model for complex disease
03
282151199 2005 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 16 (6): 1057-1064
Forte A; Galderisi U; De Feo M; Quarto C; Renzulli A; et al.
Carotid arteriotomy induces different temporal gene expression profiles in normotensive and hypertensive rat strains
00
283136201 2005 INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE 46 (6): 2140-2146
Chalberg TW; Genise HL; Vollrath D; Calos MP
phi C31 integrase confers genomic integration and long-term transgene expression in rat retina
04
284125202 2005 JOURNAL OF ANIMAL BREEDING AND GENETICS 122: 28-35
Duchesne A; Eggen A
Radiation hybrid mapping of genes and newly identified microsatellites in candidate regions for bovine arthrogryposis-palatoschisis and progressive ataxia based on comparative data from man, mouse and rat
00
285125203 2005 JOURNAL OF APPLIED PHYSIOLOGY 98 (1): 371-379
Mashimo T; Voigt B; Kuramoto T; Serikawa T
Rat Phenome Project: The untapped potential of existing rat strains
35
286144204 2005 JOURNAL OF APPLIED PHYSIOLOGY 98 (3): 838-844
Golder FJ; Zabka AG; Bavis RW; Baker-Herman T; Fuller DD; et al.
Differences in time-dependent hypoxic phrenic responses among inbred rat strains
02
287139205 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (3): 1953-1961
Cal S; Quesada V; Llamazares M; Diaz-Perales A; Garabaya C; et al.
Human polyserase-2, a novel enzyme with three tandem serine protease domains in a single polypeptide chain
01
288154206 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (13): 12721-12731
Hoodbhoy T; Joshi S; Boja ES; Williams SA; Stanley P; et al.
Human sperm do not bind to rat zonae pellucidae despite the presence of four homologous glycoproteins
05
289166207 2005 JOURNAL OF BIOMEDICAL OPTICS 10 (4): Art. No. 041204
Murakami T; Kobayashi E
Color-engineered rats and luminescent LacZ imaging: a new platform to visualize biological processes
02
290145208 2005 JOURNAL OF CELLULAR BIOCHEMISTRY 94 (5): 890-898
Arnosti DN; Kulkarni MM
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
291176209 2005 JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 304B (1): 75-85
Tanzer A; Amemiya CT; Kim CB; Stadler PF
Evolution of microRNAs located within Hox gene clusters
09
292111210 2005 JOURNAL OF HEALTH SCIENCE 51 (2): 253-256
Ohta K; Osada S; Nishikawa J; Nishihara T
Cloning and characterization of a cDNA encoding the histone acetyltransferase monocytic leukemia zinc finger protein (MOZ) in the rat
00
293125212 2005 JOURNAL OF MOLECULAR ENDOCRINOLOGY 35 (1): 1-12
Wang H; Horikawa Y; Jin L; Narita T; Yamada S; et al.
Gene expression profile in rat pancreatic islet and RINm5F cells
00
294152213 2005 JOURNAL OF MOLECULAR EVOLUTION 60 (5): 566-576
Shi P; Bielawski JP; Yang H; Zhang YP
Adaptive diversification of vomeronasal receptor 1 genes in rodents
14
295128214 2005 JOURNAL OF NUTRITION 135 (9): 2144-2150
Sunde RA; Evenson JK; Thompson KM; Sachdev SW
Dietary selenium requirements based on glutathione peroxidase-1 activity and mRNA levels and other Se-dependent parameters are not increased by pregnancy and lactation in rats
02
296151216 2005 JOURNAL OF VIROLOGY 79 (23): 14698-14707
Cantrell MA; Ederer MM; Erickson IK; Swier VJ; Baker RJ; et al.
MysTR: an endogenous retrovirus family in mammals that is undergoing recent amplifications to unprecedented copy numbers
00
297150217 2005 KIDNEY INTERNATIONAL 68 (6): 2462-2472
Van Dijk SJ; Specht PAC; Lutz MM; Lazar J; Jacob HJ; et al.
Interaction between Rf-1 and Rf-4 quantitative trait loci increases susceptibility to renal damage in double congenic rats
11
298180220 2005 MECHANISMS OF AGEING AND DEVELOPMENT 126 (6-7): 767-782
Maya-Mendoza A; Hernandez-Munoz R; Gariglio P; Aranda-Anzaldo A
Natural ageing in the rat liver correlates with progressive stabilisation of DNA-nuclear matrix interactions and withdrawal of genes from the nuclear substructure
00
299135221 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (2): 193-199
Kosiol C; Goldman N
Different versions of the Dayhoff rate matrix
05
300135224 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (4): 1147-1155
Zhang JZ; He XL
Significant impact of protein dispensability on the instantaneous rate of protein evolution
012

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