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Wed Mar 15 14:12:30 2006

Proof and evolutionary analysis of ancient genome
duplication in the yeast Saccharomyces cerevisiae

KELLIS M, BIRREN BW, LANDER ES
NATURE 428: 617-624 2004
and the citing papers

Nodes: 134, Authors: 705, Journals: 59, Outer References: 5204, Words: 591
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by journal name.

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#LCRNCRNode / Date / Journal / AuthorLCSGCS
101225100 2005 NUCLEIC ACIDS RESEARCH 33: D348-D352
Hermida L; Brachat S; Voegeli S; Philippsen P; Primig M
The Ashbya Genome Database (AGD) - a tool for the yeast community and genome biologists
00
102231101 2005 NUCLEIC ACIDS RESEARCH 33: D364-D368
Guldener U; Munsterkotter M; Kastenmuller G; Strack N; van Helden J; et al.
CYGD: the comprehensive Yeast Genome Database
010
103288102 2005 NUCLEIC ACIDS RESEARCH 33 (9): 2838-2851
Zhang ZH; Dietrich FS
Mapping of transcription start sites in Saccharomyces cerevisiae using 5 ' SAGE
22
104281103 2005 NUCLEIC ACIDS RESEARCH 33 (14): 4626-4638
Makarova KS; Wolf YI; Mekhedov SL; Mirkin BG; Koonin EV
Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell
01
105234104 2005 NUCLEIC ACIDS RESEARCH 33 (19): 6164-6171
Notebaart RA; Huynen MA; Teusink B; Siezen RJ; Snel B
Correlation between sequence conservation and the genomic context after gene duplication
01
106130105 2005 NUCLEIC ACIDS RESEARCH 33 (19): 6319-6326
Schacherer J; de Montigny J; Welcker A; Souciet JL; Potier S
Duplication processes in Saccharomyces cerevisiae haploid strains
00
107240106 2005 PLANT CELL 17 (1): 4-11
Veitia RA
Paralogs in polyploids: One for all and all for one?
05
108156107 2005 PLANT CELL 17 (4): 1033-1045
Chantret N; Salse J; Sabot F; Rahman S; Bellec A; et al.
Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and aegilops)
03
109157108 2005 PLANT MOLECULAR BIOLOGY 57 (6): 907-924
Morimoto R; Kosugi T; Nakamura C; Takumi S
Intragenic diversity and functional conservation of the three homoeologous loci of the KN1-type homeobox gene Wknox1 in common wheat
00
110166109 2005 PLANT MOLECULAR BIOLOGY 58 (2): 229-245
Gachon CMM; Langlois-Meurinne M; Henry Y; Saindrenan P
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
111359110 2005 PLANT MOLECULAR BIOLOGY 59 (1): 63-74
Wang HB; Yu LJ; Lai F; Liu LS; Wang JF
Molecular evidence for asymmetric evolution of sister duplicated blocks after cereal polyploidy
00
112112434 2004 PLOS BIOLOGY 2 (12): Art. No. e398
Gasch AP; Moses AM; Chiang DY; Fraser HB; Berardini M; et al.
Conservation and evolution of cis-regulatory systems in ascomycete fungi
012
113251111 2005 PLOS BIOLOGY 3 (10): 1700-1708
Dehal P; Boore JL
Two rounds of whole genome duplication in the ancestral vertebrate
00
11424535 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (39): 14144-14149
Hittinger CT; Rokas A; Carroll SB
Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts
59
11523836 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (40): 14349-14354
Messing J; Bharti AK; Karlowski WM; Gundlach H; Kim HR; et al.
Sequence composition and genome organization of maize
126
116284112 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102: 6630-6635
Medina M
Genomes, phylogeny, and evolutionary systems biology
01
117132113 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (3): 707-712
Gu X; Zhang ZQ; Huang W
Rapid evolution of expression and regulatory divergences after yeast gene duplication
38
118150114 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (40): 14338-14343
Drummond DA; Bloom JD; Adami C; Wilke CO; Arnold FH
Why highly expressed proteins evolve slowly
01
119353133 2006 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 103 (8): 2730-2735
Chapman BA; Bowers JE; Feltus FA; Paterson AH
Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
00
120133115 2005 PROTEOMICS 5 (1): 67-75
Matis M; Zakelj-Mavric M; Peter-Katalinic J
Mass spectrometry and database search in the analysis of proteins from the fungus Pleurotus ostreatus
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
121244116 2005 RNA-A PUBLICATION OF THE RNA SOCIETY 11 (7): 1064-1072
Kachouri R; Stribinskis S; Zhu YG; Ramos KS; Westhof E; et al.
A surprisingly large RNase P RNA in Candida glabrata
00
12212637 2004 SCIENCE 306 (5700): 1367-1370
Gao LZ; Innan H
Very low gene duplication rate in the yeast genome
612
123113117 2005 SCIENCE 307 (5713): 1321-1324
Loftus BJ; Fung E; Roncaglia P; Rowley D; Amedeo P; et al.
The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans
431
124214118 2005 SCIENCE 309 (5736): 938-940
Ihmels J; Bergmann S; Gerami-Nejad M; Yanai I; McClellan M; et al.
Rewiring of the yeast transcriptional network through the evolution of motif usage
04
125138119 2005 SCIENCE 309 (5743): 2010-2013
Raser JM; O'Shea EK
Noise in gene expression: Origins, consequences, and control
03
12614438 2004 TRENDS IN GENETICS 20 (11): 544-549
Lynch M; Katju V
The altered evolutionary trajectories of gene duplicates
618
127220120 2005 TRENDS IN GENETICS 21 (1): 1-3
Ochman H; Daubin V; Lerat E
A bunch of fun-guys: the whole-genome view of yeast evolution
02
128150121 2005 TRENDS IN GENETICS 21 (1): 60-65
Lockton S; Gaut BS
Plant conserved non-coding sequences and paralogue evolution
06
129133122 2005 TRENDS IN GENETICS 21 (10): 548-551
Davis JC; Petrov DA
Do disparate mechanisms of duplication add similar genes to the genome?
00
130382123 2005 TRENDS IN GENETICS 21 (10): 559-567
Panopoulou G; Poustka AJ
Timing and mechanism of ancient vertebrate genome duplications - the adventure of a hypothesis
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
131535124 2005 TRENDS IN GENETICS 21 (11): 602-607
Li WH; Yang J; Gu X
Expression divergence between duplicate genes
00
1323133125 2005 TRENDS IN GENETICS 21 (12): 673-682
Coghlan A; Eichler EE; Oliver SG; Paterson AH; Stein L
Chromosome evolution in eukaryotes: a multi-kingdom perspective
00
133146134 2006 TRENDS IN GENETICS 22 (1): 56-63
Ooi SL; Pan XW; Peyser BD; Ye P; Meluh PB; et al.
Global synthetic-lethality analysis and yeast functional profiling
00
134126126 2005 VIRUS GENES 31 (1): 65-72
Arav-Boger R; Zong JC; Foster CB
Loss of linkage disequilibrium and accelerated protein divergence in duplicated cytomegalovirus chemokine genes
01

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