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Wed Mar 15 14:12:31 2006

Proof and evolutionary analysis of ancient genome
duplication in the yeast Saccharomyces cerevisiae

KELLIS M, BIRREN BW, LANDER ES
NATURE 428: 617-624 2004
and the citing papers

Nodes: 134, Authors: 705, Journals: 59, Outer References: 5204, Words: 591
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Collection span: 2004 - 2006
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Gel'fand MS
The apology of bioinformatics
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Taylor JS; Raes J
Duplication and divergence: The evolution of new genes and old ideas
212
5113465 2005 FEMS YEAST RESEARCH 5 (12): 1115-1128
Rubio-Texeira M
A comparative analysis of the GAL genetic switch between not-so-distant cousins: Saccharomyces cerevisiae versus Kluyveromyces lactis
01
6113332 2004 NATURE REVIEWS GENETICS 5 (11): 826-837
Kitano H
Biological robustness
119
73133125 2005 TRENDS IN GENETICS 21 (12): 673-682
Coghlan A; Eichler EE; Oliver SG; Paterson AH; Stein L
Chromosome evolution in eukaryotes: a multi-kingdom perspective
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8112434 2004 PLOS BIOLOGY 2 (12): Art. No. e398
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Conservation and evolution of cis-regulatory systems in ascomycete fungi
012
9812439 2005 ANNUAL REVIEW OF MICROBIOLOGY 59: 135-153
Liti G; Louis EJ
Yeast evolution and comparative genomics
02
10312198 2005 NATURE REVIEWS MICROBIOLOGY 3 (10): 753-764
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Deciphering the model pathogenic fungus Cryptococcus neoformans
04
#LCRNCRNode / Date / Journal / AuthorLCSGCS
111117127 2006 BIOTECHNOLOGY ADVANCES 24 (2): 210-223
Rubio-Texeira M
Endless versatility in the biotechnological applications of Kluyveromyces LAC genes
00
12311540 2005 ANNUAL REVIEW OF PHYTOPATHOLOGY 43: 279-308
Kohn LM
Mechanisms of fungal speciation
00
13111584 2005 MOLECULAR AND CELLULAR BIOLOGY 25 (16): 7226-7238
Putnam CD; Pennaneach V; Kolodner RD
Saccharomyces cerevisiae as a model system to define the chromosomal instability phenotype
01
14311176 2005 GENOME RESEARCH 15 (12): 1620-1631
Galagan JE; Henn MR; Ma LJ; Cuomo CA; Birren B
Genomics of the fungal kingdom: Insights into eukaryotic biology
01
15110231 2004 NATURE REVIEWS GENETICS 5 (10): 752-763
Van de Peer Y
Computational approaches to unveiling ancient genome duplications
39
1629986 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (4): 856-873
Fabre E; Muller H; Therizols P; Lafontaine I; Dujon B; et al.
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Eichinger L; Pachebat JA; Glockner G; Rajandream MA; Sucgang R; et al.
The genome of the social amoeba Dictyostelium discoideum
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Incongruent patterns of local and global genome size evolution in cotton
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19288102 2005 NUCLEIC ACIDS RESEARCH 33 (9): 2838-2851
Zhang ZH; Dietrich FS
Mapping of transcription start sites in Saccharomyces cerevisiae using 5 ' SAGE
22
20284112 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102: 6630-6635
Medina M
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2118366 2005 GENETICS 169 (1): 215-229
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Functional evolution of the vertebrate Myb gene family: B-Myb, but neither A-Myb nor C-Myb, complements drosophila Myb in hemocytes
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22382123 2005 TRENDS IN GENETICS 21 (10): 559-567
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23281103 2005 NUCLEIC ACIDS RESEARCH 33 (14): 4626-4638
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Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell
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2427648 2005 COMPLEXITY 11 (2): 14-27
Zuckerkandl E
"Natural restoration" can generate biological complexity
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2517668 2005 GENETICS 170 (2): 555-568
Friesen H; Colwill K; Robertson K; Schub O; Andrews B
Interaction of the Saccharomyces cerevisiae cortical actin patch protein Rvs167p with proteins involved in ER to Golgi vesicle trafficking
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2617455 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (2): 214-221
Siggia ED
Computational methods for transcriptional regulation
02
2747374 2005 GENOME RESEARCH 15 (10): 1421-1430
Kuepfer L; Sauer U; Blank LM
Metabolic functions of duplicate genes in Saccharomyces cerevisiae
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2837177 2005 GENOME RESEARCH 15 (12): 1675-1682
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Fish genomics and biology
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2917197 2005 NATURE REVIEWS MICROBIOLOGY 3 (5): 421-429
Wendland J; Walther A
Ashbya gossypii: A model for fungal developmental biology
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30166109 2005 PLANT MOLECULAR BIOLOGY 58 (2): 229-245
Gachon CMM; Langlois-Meurinne M; Henry Y; Saindrenan P
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
3116425 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (12): 2232-2245
Guillet-Claude C; Isabel N; Pelgas B; Bousquet J
The evolutionary implications of knox-I gene duplications in conifers: Correlated evidence from phylogeny, gene mapping, and analysis of functional divergence
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3216333 2004 NATURE REVIEWS MICROBIOLOGY 2 (7): 533-540
Verstrepen KJ; Reynolds TB; Fink GR
Origins of variation in the fungal cell surface
08
3326257 2005 CURRENT OPINION IN MICROBIOLOGY 8 (4): 378-384
Kaur R; Domergue R; Zupancic ML; Cormack BP
A yeast by any other name: Candida glabrata and its interaction with the host
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3426263 2005 EUKARYOTIC CELL 4 (6): 1102-1115
Hall C; Brachat S; Dietrich FS
Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae
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Wagner GP; Takahashi K; Lynch V; Prohaska SJ; Fried C; et al.
Molecular evolution of duplicated ray finned fish HoxA clusters: Increased synonymous substitution rate and asymmetrical co-divergence of coding and non-coding sequences
01
3616126 2004 MOLECULAR MICROBIOLOGY 53 (2): 381-389
Piskur J; Langkjaer RB
Yeast genome sequencing: the power of comparative genomics
69
3716145 2005 BMC GENETICS 6: Art. No. 8
Lesage G; Shapiro J; Specht CA; Sdicu AM; Menard P; et al.
An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae
01
3826061 2005 EUKARYOTIC CELL 4 (2): 356-364
Flores CL; Gancedo C
Yarrowia lipolytica mutants devoid of pyruvate carboxylase activity show an unusual growth phenotype
01
3916090 2005 MOLECULAR MICROBIOLOGY 57 (1): 291-305
Avendano A; Riego L; DeLuna A; Aranda C; Romero G; et al.
Swi/SNF-GCN5-dependent chromatin remodelling determines induced expression of GDH3, one of the paralogous genes responsible for ammonium assimilation and glutamate biosynthesis in Saccharomyces cerevisiae
01
401597 2004 CELL 119 (4): 491-502
Niessing D; Huttelmaier S; Zenklusen D; Singer RH; Burley SK
She2p is a novel RNA binding protein with a basic helical hairpin motif
04
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4135987 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (5): 1337-1344
Rokas A; Carroll SB
More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
04
42359110 2005 PLANT MOLECULAR BIOLOGY 59 (1): 63-74
Wang HB; Yu LJ; Lai F; Liu LS; Wang JF
Molecular evidence for asymmetric evolution of sister duplicated blocks after cereal polyploidy
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431584 2004 BIOESSAYS 26 (11): 1225-1235
Simillion C; Vandepoele K; Van de Peer Y
Recent developments in computational approaches for uncovering genomic homology
02
4415720 2004 GENOME RESEARCH 14 (10B): 2010-2014
Hill DE; Brasch MA; del Campo AA; Doucette-Stamm L; Garrels JI; et al.
Academia-industry collaboration: An integral element for building "omic" resources
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4515730 2004 NATURE 431 (7011): 946-957
Jaillon O; Aury JM; Brunet F; Petit JL; Stange-Thomann N; et al.
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
780
46157108 2005 PLANT MOLECULAR BIOLOGY 57 (6): 907-924
Morimoto R; Kosugi T; Nakamura C; Takumi S
Intragenic diversity and functional conservation of the three homoeologous loci of the KN1-type homeobox gene Wknox1 in common wheat
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03
481555 2004 BMC EVOLUTIONARY BIOLOGY 4: Art. No. 32
Karev GP; Wolf YI; Berezovskaya FS; Koonin EV
Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models
02
4925444 2005 BIOLOGY OF THE CELL 97 (7): 487-500
Pettersson N; Filipsson C; Becit E; Brive L; Hohmann S
Aquaporins in yeasts and filamentous fungi
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5015480 2005 JOURNAL OF CELL BIOLOGY 170 (2): 225-235
Niepel M; Strambio-de-Castillia C; Fasolo J; Chait BT; Rout MP
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Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
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Theoretical and practical advances in genome halving
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Physical mapping and microsynteny of Brassica rapa ssp pekinensis genome corresponding to a 222 kbp gene-rich region of Arabidopsis chromosome 4 and partially duplicated on chromosome 5
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Only one of the two annotated Lactococcus lactis fabG genes encodes a functional beta-ketoacyl-acyl carrier protein reductase
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Mass spectrometry and database search in the analysis of proteins from the fungus Pleurotus ostreatus
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Davis JC; Petrov DA
Do disparate mechanisms of duplication add similar genes to the genome?
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