Missing Links?: 6   Citation Matrix Historiographs Glossary  HistCite Guide  About
Wed Mar 15 14:12:31 2006

Proof and evolutionary analysis of ancient genome
duplication in the yeast Saccharomyces cerevisiae

KELLIS M, BIRREN BW, LANDER ES
NATURE 428: 617-624 2004
and the citing papers

Nodes: 134, Authors: 705, Journals: 59, Outer References: 5204, Words: 591
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by GCS.

Page 1 of 2: [  1  2 ]

#LCRNCRNode / Date / Journal / AuthorLCSGCS
104527 2004 NATURE 428 (6983): 617-624
Kellis M; Birren BW; Lander ES
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
133133
213429 2004 NATURE 430 (6995): 35-44
Dujon B; Sherman D; Fischer G; Durrens P; Casaregola S; et al.
Genome evolution in yeasts
33112
315730 2004 NATURE 431 (7011): 946-957
Jaillon O; Aury JM; Brunet F; Petit JL; Stange-Thomann N; et al.
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
780
429892 2005 NATURE 435 (7038): 43-57
Eichinger L; Pachebat JA; Glockner G; Rajandream MA; Sucgang R; et al.
The genome of the social amoeba Dictyostelium discoideum
032
5113117 2005 SCIENCE 307 (5713): 1321-1324
Loftus BJ; Fung E; Roncaglia P; Rowley D; Amedeo P; et al.
The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans
431
623836 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (40): 14349-14354
Messing J; Bharti AK; Karlowski WM; Gundlach H; Kim HR; et al.
Sequence composition and genome organization of maize
126
714921 2004 GENOME RESEARCH 14 (10A): 1924-1931
Lai JS; Ma JX; Swigonova Z; Ramakrishna W; Linton E; et al.
Gene loss and movement in the maize genome
322
8113332 2004 NATURE REVIEWS GENETICS 5 (11): 826-837
Kitano H
Biological robustness
119
914438 2004 TRENDS IN GENETICS 20 (11): 544-549
Lynch M; Katju V
The altered evolutionary trajectories of gene duplicates
618
101208 2004 CURRENT BIOLOGY 14 (10): R392-R394
Wolfe K
Evolutionary genomics: Yeasts accelerate beyond BLAST
013
#LCRNCRNode / Date / Journal / AuthorLCSGCS
1113667 2005 GENETICS 169 (2): 1157-1164
He XL; Zhang JZ
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
613
1211452 2004 ANNUAL REVIEW OF GENETICS 38: 615-643
Taylor JS; Raes J
Duplication and divergence: The evolution of new genes and old ideas
212
13112434 2004 PLOS BIOLOGY 2 (12): Art. No. e398
Gasch AP; Moses AM; Chiang DY; Fraser HB; Berardini M; et al.
Conservation and evolution of cis-regulatory systems in ascomycete fungi
012
1412637 2004 SCIENCE 306 (5700): 1367-1370
Gao LZ; Innan H
Very low gene duplication rate in the yeast genome
612
15231101 2005 NUCLEIC ACIDS RESEARCH 33: D364-D368
Guldener U; Munsterkotter M; Kastenmuller G; Strack N; van Helden J; et al.
CYGD: the comprehensive Yeast Genome Database
010
1616126 2004 MOLECULAR MICROBIOLOGY 53 (2): 381-389
Piskur J; Langkjaer RB
Yeast genome sequencing: the power of comparative genomics
69
17110231 2004 NATURE REVIEWS GENETICS 5 (10): 752-763
Van de Peer Y
Computational approaches to unveiling ancient genome duplications
39
1824535 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (39): 14144-14149
Hittinger CT; Rokas A; Carroll SB
Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts
59
1914019 2004 GENOME RESEARCH 14 (8): 1530-1536
Castillo-Davis CI; Hartl DL; Achaz G
cis-Regulatory and protein evolution in orthologous and duplicate genes
18
2016333 2004 NATURE REVIEWS MICROBIOLOGY 2 (7): 533-540
Verstrepen KJ; Reynolds TB; Fink GR
Origins of variation in the fungal cell surface
08
#LCRNCRNode / Date / Journal / AuthorLCSGCS
2135259 2005 CURRENT OPINION IN PLANT BIOLOGY 8 (2): 135-141
Adams KL; Wendel JF
Polyploidy and genome evolution in plants
08
2223093 2005 NATURE GENETICS 37 (3): 295-299
Kafri R; Bar-Even A; Pilpel Y
Transcription control reprogramming in genetic backup circuits
18
23132113 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (3): 707-712
Gu X; Zhang ZQ; Huang W
Rapid evolution of expression and regulatory divergences after yeast gene duplication
38
241386 2004 BMC EVOLUTIONARY BIOLOGY 4: Art. No. 51
Berg J; Lassig M; Wagner A
Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications
06
2513814 2004 GENETICS 167 (3): 1109-1121
Andalis AA; Storchova Z; Styles C; Galitski T; Pellman D; et al.
Defects arising from whole-genome duplications in Saacharomyces cerevisiae
36
2632217 2004 GENOME BIOLOGY 5 (12): Art. No. 250
Van de Peer Y
Tetraodon genome confirms Takifugu findings: most fish are ancient polyploids
06
27150121 2005 TRENDS IN GENETICS 21 (1): 60-65
Lockton S; Gaut BS
Plant conserved non-coding sequences and paralogue evolution
06
2813215 2004 GENETICS 168 (1): 569-574
Veitia RA
Gene dosage balance in cellular pathways: Implications for dominance and gene duplicability
15
2913624 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (11): 2116-2121
Wagner GP; Fried C; Prohaska SJ; Stadler PF
Divergence of conserved non-coding sequences: rate estimates and relative rate tests
15
3029986 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (4): 856-873
Fabre E; Muller H; Therizols P; Lafontaine I; Dujon B; et al.
Comparative genomics in hemiascomycete yeasts: Evolution of sex, silencing, and subtelomeres
25
#LCRNCRNode / Date / Journal / AuthorLCSGCS
31240106 2005 PLANT CELL 17 (1): 4-11
Veitia RA
Paralogs in polyploids: One for all and all for one?
05
321597 2004 CELL 119 (4): 491-502
Niessing D; Huttelmaier S; Zenklusen D; Singer RH; Burley SK
She2p is a novel RNA binding protein with a basic helical hairpin motif
04
3321028 2004 NATURE 430 (6995): 25-26
Goffeau A
Evolutionary genomics - Seeing double
24
3425264 2005 FEMS YEAST RESEARCH 5 (6-7): 545-558
Blank LM; Lehmbeck F; Sauer U
Metabolic-flux and network analysis in fourteen hemiascomycetous yeasts
14
3514078 2005 INTERNATIONAL JOURNAL FOR PARASITOLOGY 35 (2): 225-233
Yeo M; Acosta N; Llewellyn M; Sanchez H; Adamson S; et al.
Origins of Chagas disease: Didelphis species are natural hosts of Trypanosoma cruzi I and armadillos hosts of Trypanosoma cruzi II, including hybrids
04
3613979 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (14): 14097-14104
Loewen CJR; Levine TP
A highly conserved binding site in vesicle-associated membrane protein-associated protein (VAP) for the FFAT motif of lipid-binding proteins
04
3735987 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (5): 1337-1344
Rokas A; Carroll SB
More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
04
38312198 2005 NATURE REVIEWS MICROBIOLOGY 3 (10): 753-764
Idnurm A; Bahn YS; Nielsen K; Lin XR; Fraser JA; et al.
Deciphering the model pathogenic fungus Cryptococcus neoformans
04
39214118 2005 SCIENCE 309 (5736): 938-940
Ihmels J; Bergmann S; Gerami-Nejad M; Yanai I; McClellan M; et al.
Rewiring of the yeast transcriptional network through the evolution of motif usage
04
4014110 2004 FEBS LETTERS 569 (1-3): 173-177
Boumann HA; de Kruijff B; Heck AJR; de Kroon AIPM
The selective utilization of substrates in vivo by the phosphatidylethanolamine and phosphatidylcholine biosynthetic enzymes Ept1p and Cpt1p in yeast
03
#LCRNCRNode / Date / Journal / AuthorLCSGCS
4119518 2004 GENOME RESEARCH 14 (8): 1474-1482
Grover CE; Kim HR; Wing RA; Paterson AH; Wendel JF
Incongruent patterns of local and global genome size evolution in cotton
03
4216425 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (12): 2232-2245
Guillet-Claude C; Isabel N; Pelgas B; Bousquet J
The evolutionary implications of knox-I gene duplications in conifers: Correlated evidence from phylogeny, gene mapping, and analysis of functional divergence
03
4333850 2005 CURRENT BIOLOGY 15 (11): 1016-1021
He XL; Zhang JZ
Gene complexity and gene duplicability
13
44130260 2005 CYTOGENETIC AND GENOME RESEARCH 110 (1-4): 8-24
Brosius J
Echoes from the past - are we still in an RNP world?
03
4518366 2005 GENETICS 169 (1): 215-229
Davidson CJ; Tirouvanziam R; Herzenberg LA; Lipsick JS
Functional evolution of the vertebrate Myb gene family: B-Myb, but neither A-Myb nor C-Myb, complements drosophila Myb in hemocytes
03
4635172 2005 GENOME RESEARCH 15 (4): 552-559
Pereira-Leal JB; Teichmann SA
Novel specificities emerge by stepwise duplication of functional modules
13
4715480 2005 JOURNAL OF CELL BIOLOGY 170 (2): 225-235
Niepel M; Strambio-de-Castillia C; Fasolo J; Chait BT; Rout MP
The nuclear pore complex-associated protein, Mlp2p, binds to the yeast spindle pole body and promotes its efficient assembly
03
4817197 2005 NATURE REVIEWS MICROBIOLOGY 3 (5): 421-429
Wendland J; Walther A
Ashbya gossypii: A model for fungal developmental biology
13
49156107 2005 PLANT CELL 17 (4): 1033-1045
Chantret N; Salse J; Sabot F; Rahman S; Bellec A; et al.
Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and aegilops)
03
50138119 2005 SCIENCE 309 (5743): 2010-2013
Raser JM; O'Shea EK
Noise in gene expression: Origins, consequences, and control
03
#LCRNCRNode / Date / Journal / AuthorLCSGCS
511584 2004 BIOESSAYS 26 (11): 1225-1235
Simillion C; Vandepoele K; Van de Peer Y
Recent developments in computational approaches for uncovering genomic homology
02
521555 2004 BMC EVOLUTIONARY BIOLOGY 4: Art. No. 32
Karev GP; Wolf YI; Berezovskaya FS; Koonin EV
Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models
02
5312211 2004 FEMS MICROBIOLOGY LETTERS 239 (1): 95-101
Sims AH; Dunn-Coleman NS; Robson GD; Oliver SG
Glutamic protease distribution is limited to filamentous fungi
02
5413516 2004 GENOME BIOLOGY 5 (10): Art. No. R76
Baudot A; Jacq B; Brun C
A scale of functional divergence for yeast duplicated genes revealed from analysis of the protein-protein interaction network
02
5512722 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (45): 46606-46613
Delplanque J; Delpierre G; Opperdoes FR; Van Schaftingen E
Tissue distribution and evolution of fructosamine 3-kinase and fructosamine 3-kinase-related protein
02
56812439 2005 ANNUAL REVIEW OF MICROBIOLOGY 59: 135-153
Liti G; Louis EJ
Yeast evolution and comparative genomics
02
5734046 2005 CELL CYCLE 4 (1): 125-130
Archambault V; Buchler NE; Wilmes GM; Jacobson MD; Cross FR
Two-faced Cyclins with eyes on the targets
02
5817455 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (2): 214-221
Siggia ED
Computational methods for transcriptional regulation
02
5926263 2005 EUKARYOTIC CELL 4 (6): 1102-1115
Hall C; Brachat S; Dietrich FS
Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae
12
6015083 2005 MOLECULAR AND CELLULAR BIOLOGY 25 (14): 5920-5932
Lynch PJ; Fraser HB; Sevastopoulos E; Rine J; Rusche LN
Sum1p, the origin recognition complex, and the spreading of a promoter-specific repressor in Saccharomyces cerevisiae
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
6112185 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (3): 501-505
Zhang Z; Luo ZW; Kishino H; Kearsey MJ
Divergence pattern of duplicate genes in protein-protein interactions follows the power law
02
6213094 2005 NATURE GENETICS 37 (6): 630-635
Thomson JM; Gaucher EA; Burgan MF; De Kee DW; Li T; et al.
Resurrecting ancestral alcohol dehydrogenases from yeast
02
6333095 2005 NATURE GENETICS 37 (7): 777-782
Wong S; Wolfe KH
Birth of a metabolic gene cluster in yeast by adaptive gene relocation
02
64288102 2005 NUCLEIC ACIDS RESEARCH 33 (9): 2838-2851
Zhang ZH; Dietrich FS
Mapping of transcription start sites in Saccharomyces cerevisiae using 5 ' SAGE
22
65166109 2005 PLANT MOLECULAR BIOLOGY 58 (2): 229-245
Gachon CMM; Langlois-Meurinne M; Henry Y; Saindrenan P
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications
02
66133115 2005 PROTEOMICS 5 (1): 67-75
Matis M; Zakelj-Mavric M; Peter-Katalinic J
Mass spectrometry and database search in the analysis of proteins from the fungus Pleurotus ostreatus
02
67220120 2005 TRENDS IN GENETICS 21 (1): 1-3
Ochman H; Daubin V; Lerat E
A bunch of fun-guys: the whole-genome view of yeast evolution
02
681333 2004 BIOCHEMISTRY 43 (37): 11782-11789
Wang HH; Cronan JE
Only one of the two annotated Lactococcus lactis fabG genes encodes a functional beta-ketoacyl-acyl carrier protein reductase
01
6911523 2004 MICROBIOLOGY-SGM 150: 1603-1606
Ussery DW; Hallin PF; Lagesen K; Wassenaar TM
Genome Update: tRNAs in sequenced microbial genomes
01
7016145 2005 BMC GENETICS 6: Art. No. 8
Lesage G; Shapiro J; Specht CA; Sdicu AM; Menard P; et al.
An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
7121849 2005 CURRENT BIOLOGY 15 (2): R52-R53
Presgraves DC
Evolutionary genomics: New genes for new jobs
01
7223754 2005 CURRENT OPINION IN BIOTECHNOLOGY 16 (3): 356-360
Hohmann S
The Yeast Systems Biology Network: mating communities
01
7326061 2005 EUKARYOTIC CELL 4 (2): 356-364
Flores CL; Gancedo C
Yarrowia lipolytica mutants devoid of pyruvate carboxylase activity show an unusual growth phenotype
01
7423862 2005 EUKARYOTIC CELL 4 (2): 401-406
Fraser JA; Huang JC; Pukkila-Worley R; Alspaugh JA; Mitchell TG; et al.
Chromosomal translocation and segmental duplication in Cryptococcus neoformans
11
75113465 2005 FEMS YEAST RESEARCH 5 (12): 1115-1128
Rubio-Texeira M
A comparative analysis of the GAL genetic switch between not-so-distant cousins: Saccharomyces cerevisiae versus Kluyveromyces lactis
01
7617668 2005 GENETICS 170 (2): 555-568
Friesen H; Colwill K; Robertson K; Schub O; Andrews B
Interaction of the Saccharomyces cerevisiae cortical actin patch protein Rvs167p with proteins involved in ER to Golgi vesicle trafficking
01
7742975 2005 GENOME RESEARCH 15 (10): 1456-1461
Byrne KP; Wolfe KH
The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species
11
78311176 2005 GENOME RESEARCH 15 (12): 1620-1631
Galagan JE; Henn MR; Ma LJ; Cuomo CA; Birren B
Genomics of the fungal kingdom: Insights into eukaryotic biology
01
7926281 2005 JOURNAL OF MOLECULAR EVOLUTION 60 (5): 665-676
Wagner GP; Takahashi K; Lynch V; Prohaska SJ; Fried C; et al.
Molecular evolution of duplicated ray finned fish HoxA clusters: Increased synonymous substitution rate and asymmetrical co-divergence of coding and non-coding sequences
01
80111584 2005 MOLECULAR AND CELLULAR BIOLOGY 25 (16): 7226-7238
Putnam CD; Pennaneach V; Kolodner RD
Saccharomyces cerevisiae as a model system to define the chromosomal instability phenotype
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
8124489 2005 MOLECULAR MICROBIOLOGY 56 (3): 696-707
Heyken WT; Repenning A; Kumme J; Schuller HJ
Constitutive expression of yeast phospholipid biosynthetic genes by variants of Ino2 activator defective for interaction with Opi1 repressor
01
8216090 2005 MOLECULAR MICROBIOLOGY 57 (1): 291-305
Avendano A; Riego L; DeLuna A; Aranda C; Romero G; et al.
Swi/SNF-GCN5-dependent chromatin remodelling determines induced expression of GDH3, one of the paralogous genes responsible for ammonium assimilation and glutamate biosynthesis in Saccharomyces cerevisiae
01
83281103 2005 NUCLEIC ACIDS RESEARCH 33 (14): 4626-4638
Makarova KS; Wolf YI; Mekhedov SL; Mirkin BG; Koonin EV
Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell
01
84234104 2005 NUCLEIC ACIDS RESEARCH 33 (19): 6164-6171
Notebaart RA; Huynen MA; Teusink B; Siezen RJ; Snel B
Correlation between sequence conservation and the genomic context after gene duplication
01
85284112 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102: 6630-6635
Medina M
Genomes, phylogeny, and evolutionary systems biology
01
86150114 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (40): 14338-14343
Drummond DA; Bloom JD; Adami C; Wilke CO; Arnold FH
Why highly expressed proteins evolve slowly
01
87126126 2005 VIRUS GENES 31 (1): 65-72
Arav-Boger R; Zong JC; Foster CB
Loss of linkage disequilibrium and accelerated protein divergence in duplicated cytomegalovirus chemokine genes
01
881241 2004 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 3240: 326-337
Sundararajan M; Brudno M; Small K; Sidow A; Batzoglou S
Chaining algorithms for alignment of draft sequence
00
892199 2004 ENVIRONMENTAL MICROBIOLOGY 6 (10): 1001-1004
Galperin MY
The bugs that came in from the cold
00
9011712 2004 FSTTCS 2004: FOUNDATIONS OF SOFTWARE TECHNOLOGY AND THEORETICAL COMPUTER SCIENCE 3328: 1-15
Alekseyev MA; Pevzner PA
Genome halving problem revisited
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
9112213 2004 GENE 340 (2): 283-290
Hon-Nami K; Ueno S; Endo H; Nishimura H; Igarashi T; et al.
A novel Giraffidae-specific interspersed repeat with a microsatellite, originally found in an intron of a ruminant paralogous p97bcnt gene
00
9215720 2004 GENOME RESEARCH 14 (10B): 2010-2014
Hill DE; Brasch MA; del Campo AA; Doucette-Stamm L; Garrels JI; et al.
Academia-industry collaboration: An integral element for building "omic" resources
00
93311540 2005 ANNUAL REVIEW OF PHYTOPATHOLOGY 43: 279-308
Kohn LM
Mechanisms of fungal speciation
00
94114741 2005 BIOFIZIKA 50 (4): 752-766
Gel'fand MS
The apology of bioinformatics
00
9521442 2005 BIOFUTUR (254): 29-33
Robinson-Rechavi M
Fish, a successful genomic duplication
00
9613543 2005 BIOINFORMATICS 21 (7): 869-879
Yin P; Hartemink AJ
Theoretical and practical advances in genome halving
00
9725444 2005 BIOLOGY OF THE CELL 97 (7): 487-500
Pettersson N; Filipsson C; Becit E; Brive L; Hohmann S
Aquaporins in yeasts and filamentous fungi
00
98217447 2005 CELLULAR AND MOLECULAR LIFE SCIENCES 62 (19-20): 2204-2227
del Arco A; Satrustegui J
New mitochondrial carriers: an overview
00
9927648 2005 COMPLEXITY 11 (2): 14-27
Zuckerkandl E
"Natural restoration" can generate biological complexity
00
10014251 2005 CURRENT BIOLOGY 15 (16): 1439-1447
Connerly PL; Esaki M; Montegna EA; Strongin DE; Levi S; et al.
Sec16 is a determinant of transitional ER organization
00

Page 1 of 2: [  1  2 ]
Generated by HistCite 2006.02.28