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Wed Mar 15 14:12:31 2006

Proof and evolutionary analysis of ancient genome
duplication in the yeast Saccharomyces cerevisiae

KELLIS M, BIRREN BW, LANDER ES
NATURE 428: 617-624 2004
and the citing papers

Nodes: 134, Authors: 705, Journals: 59, Outer References: 5204, Words: 591
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by LCR.

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#LCRNCRNode / Date / Journal / AuthorLCSGCS
10113667 2005 GENETICS 169 (2): 1157-1164
He XL; Zhang JZ
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
613
10217668 2005 GENETICS 170 (2): 555-568
Friesen H; Colwill K; Robertson K; Schub O; Andrews B
Interaction of the Saccharomyces cerevisiae cortical actin patch protein Rvs167p with proteins involved in ER to Golgi vesicle trafficking
01
10312069 2005 GENETICS 170 (4): 1501-1513
Pyne S; Skiena S; Futcher B
Copy correction and concerted evolution in the conservation of yeast genes
00
10415373 2005 GENOME RESEARCH 15 (8): 1153-1160
Hahn MW; De Bie T; Stajich JE; Nguyen C; Cristianini N
Estimating the tempo and mode of gene family evolution from comparative genomic data
00
10514078 2005 INTERNATIONAL JOURNAL FOR PARASITOLOGY 35 (2): 225-233
Yeo M; Acosta N; Llewellyn M; Sanchez H; Adamson S; et al.
Origins of Chagas disease: Didelphis species are natural hosts of Trypanosoma cruzi I and armadillos hosts of Trypanosoma cruzi II, including hybrids
04
10613979 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (14): 14097-14104
Loewen CJR; Levine TP
A highly conserved binding site in vesicle-associated membrane protein-associated protein (VAP) for the FFAT motif of lipid-binding proteins
04
10715480 2005 JOURNAL OF CELL BIOLOGY 170 (2): 225-235
Niepel M; Strambio-de-Castillia C; Fasolo J; Chait BT; Rout MP
The nuclear pore complex-associated protein, Mlp2p, binds to the yeast spindle pole body and promotes its efficient assembly
03
10812582 2005 JOURNAL OF MOLECULAR EVOLUTION 61 (6): 758-764
Hughes AL; Friedman R
Gene duplication and the properties of biological networks
00
10915083 2005 MOLECULAR AND CELLULAR BIOLOGY 25 (14): 5920-5932
Lynch PJ; Fraser HB; Sevastopoulos E; Rine J; Rusche LN
Sum1p, the origin recognition complex, and the spreading of a promoter-specific repressor in Saccharomyces cerevisiae
02
110111584 2005 MOLECULAR AND CELLULAR BIOLOGY 25 (16): 7226-7238
Putnam CD; Pennaneach V; Kolodner RD
Saccharomyces cerevisiae as a model system to define the chromosomal instability phenotype
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
11112185 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (3): 501-505
Zhang Z; Luo ZW; Kishino H; Kearsey MJ
Divergence pattern of duplicate genes in protein-protein interactions follows the power law
02
11213588 2005 MOLECULAR GENETICS AND GENOMICS 274 (6): 579-588
Park JY; Koo DH; Hong CP; Lee SJ; Jeon JW; et al.
Physical mapping and microsynteny of Brassica rapa ssp pekinensis genome corresponding to a 222 kbp gene-rich region of Arabidopsis chromosome 4 and partially duplicated on chromosome 5
00
11316090 2005 MOLECULAR MICROBIOLOGY 57 (1): 291-305
Avendano A; Riego L; DeLuna A; Aranda C; Romero G; et al.
Swi/SNF-GCN5-dependent chromatin remodelling determines induced expression of GDH3, one of the paralogous genes responsible for ammonium assimilation and glutamate biosynthesis in Saccharomyces cerevisiae
01
11413094 2005 NATURE GENETICS 37 (6): 630-635
Thomson JM; Gaucher EA; Burgan MF; De Kee DW; Li T; et al.
Resurrecting ancestral alcohol dehydrogenases from yeast
02
11513096 2005 NATURE GENETICS 37 (12): 1372-1375
Pal C; Papp B; Lercher MJ
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
00
11617197 2005 NATURE REVIEWS MICROBIOLOGY 3 (5): 421-429
Wendland J; Walther A
Ashbya gossypii: A model for fungal developmental biology
13
117130105 2005 NUCLEIC ACIDS RESEARCH 33 (19): 6319-6326
Schacherer J; de Montigny J; Welcker A; Souciet JL; Potier S
Duplication processes in Saccharomyces cerevisiae haploid strains
00
118156107 2005 PLANT CELL 17 (4): 1033-1045
Chantret N; Salse J; Sabot F; Rahman S; Bellec A; et al.
Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and aegilops)
03
119157108 2005 PLANT MOLECULAR BIOLOGY 57 (6): 907-924
Morimoto R; Kosugi T; Nakamura C; Takumi S
Intragenic diversity and functional conservation of the three homoeologous loci of the KN1-type homeobox gene Wknox1 in common wheat
00
120166109 2005 PLANT MOLECULAR BIOLOGY 58 (2): 229-245
Gachon CMM; Langlois-Meurinne M; Henry Y; Saindrenan P
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
121132113 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (3): 707-712
Gu X; Zhang ZQ; Huang W
Rapid evolution of expression and regulatory divergences after yeast gene duplication
38
122150114 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (40): 14338-14343
Drummond DA; Bloom JD; Adami C; Wilke CO; Arnold FH
Why highly expressed proteins evolve slowly
01
123133115 2005 PROTEOMICS 5 (1): 67-75
Matis M; Zakelj-Mavric M; Peter-Katalinic J
Mass spectrometry and database search in the analysis of proteins from the fungus Pleurotus ostreatus
02
124113117 2005 SCIENCE 307 (5713): 1321-1324
Loftus BJ; Fung E; Roncaglia P; Rowley D; Amedeo P; et al.
The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans
431
125138119 2005 SCIENCE 309 (5743): 2010-2013
Raser JM; O'Shea EK
Noise in gene expression: Origins, consequences, and control
03
126150121 2005 TRENDS IN GENETICS 21 (1): 60-65
Lockton S; Gaut BS
Plant conserved non-coding sequences and paralogue evolution
06
127133122 2005 TRENDS IN GENETICS 21 (10): 548-551
Davis JC; Petrov DA
Do disparate mechanisms of duplication add similar genes to the genome?
00
128126126 2005 VIRUS GENES 31 (1): 65-72
Arav-Boger R; Zong JC; Foster CB
Loss of linkage disequilibrium and accelerated protein divergence in duplicated cytomegalovirus chemokine genes
01
1291117127 2006 BIOTECHNOLOGY ADVANCES 24 (2): 210-223
Rubio-Texeira M
Endless versatility in the biotechnological applications of Kluyveromyces LAC genes
00
130143128 2006 JOURNAL OF CELL BIOLOGY 172 (3): 347-362
Gladfelter AS; Hungerbuehler AK; Philippsen P
Asynchronous nuclear division cycles in multinucleated cells
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
131120129 2006 MOLECULAR AND BIOCHEMICAL PARASITOLOGY 146 (1): 24-29
Clark CG; Ali IKM; Zaki M; Loftus BJ; Hall N
Unique organisation of tRNA genes in Entamoeba histolytica
00
132153132 2006 NATURE STRUCTURAL & MOLECULAR BIOLOGY 13 (2): 168-176
Aviv T; Lin Z; Ben-Ari G; Smibert CA; Sicheri F
Sequence-specific recognition of RNA hairpins by the SAM domain of Vts1p
00
133146134 2006 TRENDS IN GENETICS 22 (1): 56-63
Ooi SL; Pan XW; Peyser BD; Ye P; Meluh PB; et al.
Global synthetic-lethality analysis and yeast functional profiling
00
13404527 2004 NATURE 428 (6983): 617-624
Kellis M; Birren BW; Lander ES
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
133133

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