HistCite - The sequence of the human genome (Venter)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
2301	3529 Dolinski K, Botstein D Changing perspectives in yeast research nearly a decade after the genome sequence GENOME RESEARCH. 2005 DEC; 15 (12): 1611-1619	0	14	4	103
2302	3530 Little PFR Structure and function of the human genome GENOME RESEARCH. 2005 DEC; 15 (12): 1759-1766	2	9	16	54
2303	3531 Brent MR Genome annotation past, present, and future: How to define an ORF at each locus GENOME RESEARCH. 2005 DEC; 15 (12): 1777-1786	1	42	16	70
2304	3532 Wang W, Kirkness EF Short interspersed elements (SINEs) are a major source of canine genomic diversity GENOME RESEARCH. 2005 DEC; 15 (12): 1798-1808	2	23	6	52
2305	3725 Vinogradov AE "Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison GENOME RESEARCH. 2006 MAR; 16 (3): 347-354	3	25	10	64
2306	3726 Volik S, Raphael BJ, Huang GQ, Stratton MR, Bignel G, et al. Decoding the fine-scale structure of a breast cancer genome and transcriptome GENOME RESEARCH. 2006 MAR; 16 (3): 394-404	0	21	5	63
2307	3801 Ohno M, Miura T, Furuichi M, Tominaga Y, Tsuchimoto D, et al. A genome-wide distribution of 8-oxoguanine correlates with the preferred regions for recombination and single nucleotide polymorphism in the human genome GENOME RESEARCH. 2006 MAY; 16 (5): 567-575	0	4	3	58
2308	3802 Huntley S, Baggott DM, Hamilton AT, Tran-Gyamfi M, Yang S, et al. A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors GENOME RESEARCH. 2006 MAY; 16 (5): 669-677	6	42	12	60
2309	3847 Roy SW, Hartl DL Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number GENOME RESEARCH. 2006 JUN; 16 (6): 750-756	1	29	3	75
2310	3848 Warren RL, Varabei D, Platt D, Huang X, Messina D, et al. Physical map-assisted whole-genome shotgun sequence assemblies GENOME RESEARCH. 2006 JUN; 16 (6): 768-775	1	10	9	35
#	Date / Author / Journal	LCS	GCS	LCR	CR
2311	3881 Sun M, Hurst LD, Carmichael GG, Chen J Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcription and organismic complexity GENOME RESEARCH. 2006 JUL; 16 (7): 922-933	1	17	18	64
2312	4148 Bansal V, Bashir A, Bafna V Evidence for large inversion polymorphisms in the human genome from HapMap data GENOME RESEARCH. 2007 FEB; 17 (2): 219-230	1	16	5	42
2313	4176 Peters BA, Croix BS, Sjoblom T, Cummins JM, Silliman N, et al. Large-scale identification of novel transcripts in the human genome GENOME RESEARCH. 2007 MAR; 17 (3): 287-292	1	11	10	30
2314	4260 Weinstock GM ENCODE: More genomic empowerment GENOME RESEARCH. 2007 JUN; 17 (6): 667-668	3	11	7	9
2315	4261 Gerstein MB, Bruce C, Rozowsky JS, Zheng DY, Du J, et al. What is a gene, post-ENCODE? History and updated definition GENOME RESEARCH. 2007 JUN; 17 (6): 669-681	10	78	16	103
2316	4262 Gingeras TR Origin of phenotypes: Genes and transcripts GENOME RESEARCH. 2007 JUN; 17 (6): 682-690	5	49	28	105
2317	4263 Denoeud F, Kapranov P, Ucla C, Frankish A, Castelo R, et al. Prominent use of distal 5 ' transcription start sites and discovery of a large number of additional exons in ENCODE regions GENOME RESEARCH. 2007 JUN; 17 (6): 746-759	8	52	9	35
2318	4264 Greenbaum JA, Parker SCJ, Tullius TD Detection of DNA structural motifs in functional genomic elements GENOME RESEARCH. 2007 JUN; 17 (6): 940-946	1	8	7	33
2319	4283 Kim JH, Waterman MS, Li LM Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi GENOME RESEARCH. 2007 JUL; 17 (7): 1101-1110	3	11	11	43
2320	4352 Fiston-Lavier AS, Anxolabehere D, Quesneville H A model of segmental duplication formation in Drosophila melanogaster GENOME RESEARCH. 2007 OCT; 17 (10): 1458-1470	0	10	9	61
#	Date / Author / Journal	LCS	GCS	LCR	CR
2321	4380 Green P 2x genomes - Does depth matter? GENOME RESEARCH. 2007 NOV; 17 (11): 1547-1549	2	24	5	21
2322	4381 Pontius JU, Mullikin JC, Smith DR, Lindblad-Toh K, Gnerre S, et al. Initial sequence and comparative analysis of the cat genome GENOME RESEARCH. 2007 NOV; 17 (11): 1675-1689	1	47	16	102
2323	4382 Lyle R, Prandini P, Osoegawa K, ten Hallers B, Humphray S, et al. Islands of euchromatin-like sequence and expressed of polymorphic sequences within the short arm of human chromosome 21 GENOME RESEARCH. 2007 NOV; 17 (11): 1690-1696	0	1	7	41
2324	4403 Siepel A, Diekhans M, B, rejova B, Langton L, et al. Targeted discovery of novel human exons by comparative genomics GENOME RESEARCH. 2007 DEC; 17 (12): 1763-1773	1	14	12	63
2325	4475 Cantarel BL, Korf I, Robb SMC, Parra G, Ross E, et al. MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes GENOME RESEARCH. 2008 JAN; 18 (1): 188-196	0	7	1	33
2326	4513 Prachumwat A, Li WH Gene number expansion and contraction in vertebrate genomes with respect to invertebrate genomes GENOME RESEARCH. 2008 FEB; 18 (2): 221-232	0	4	7	41
2327	4595 Zerbino DR, Birney E Velvet: Algorithms for de novo short read assembly using de Bruijn graphs GENOME RESEARCH. 2008 MAY; 18 (5): 821-829	10	76	9	28
2328	4626 Holt RA, Jones SJM The new paradigm of flow cell sequencing GENOME RESEARCH. 2008 JUN; 18 (6): 839-846	1	39	6	47
2329	4650 Hellmann I, Mang Y, Gu ZP, Li P, de la Vega FM, et al. Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals GENOME RESEARCH. 2008 JUL; 18 (7): 1020-1029	1	11	2	59
2330	4651 Holland LZ, Albalat R, Azumi K, Benito-Gutierrez E, Blow MJ, et al. The amphioxus genome illuminates vertebrate origins and cephalochordate biology GENOME RESEARCH. 2008 JUL; 18 (7): 1100-1111	2	62	6	88
#	Date / Author / Journal	LCS	GCS	LCR	CR
2331	4700 Barbazuk WB, Fu Y, McGinnis KM Genome-wide analyses of alternative splicing in plants: Opportunities and challenges GENOME RESEARCH. 2008 SEP; 18 (9): 1381-1392	0	18	14	144
2332	4856 She R, Chu JSC, Wang K, Pei J, Chen NS genBlastA: Enabling BLAST to identify homologous gene sequences GENOME RESEARCH. 2009 JAN; 19 (1): 143-149	0	1	4	22
2333	4915 Barriere A, Yang SP, Pekarek E, Thomas CG, Haag ES, et al. Detecting heterozygosity in shotgun genome assemblies: Lessons from obligately outcrossing nematodes GENOME RESEARCH. 2009 MAR; 19 (3): 470-480	0	5	5	42
2334	4966 Akey JM Constructing genomic maps of positive selection in humans: Where do we go from here? GENOME RESEARCH. 2009 MAY; 19 (5): 711-722	0	7	6	123
2335	4998 Lister R, Ecker JR Finding the fifth base: Genome-wide sequencing of cytosine methylation GENOME RESEARCH. 2009 JUN; 19 (6): 959-966	0	7	6	72
2336	4999 Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJM, et al. ABySS: A parallel assembler for short read sequence data GENOME RESEARCH. 2009 JUN; 19 (6): 1117-1123	2	9	5	31
2337	5000 Li RQ, Li YR, Fang XD, Yang HM, Wang J, et al. SNP detection for massively parallel whole-genome resequencing GENOME RESEARCH. 2009 JUN; 19 (6): 1124-1132	1	5	7	32
2338	5059 McKernan KJ, Peckham HE, Costa GL, McLaughlin SF, Fu YT, et al. Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding GENOME RESEARCH. 2009 SEP; 19 (9): 1527-1541	2	10	8	53
2339	5060 Ahn SM, Kim TH, Lee S, Kim D, Ghang H, et al. The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group GENOME RESEARCH. 2009 SEP; 19 (9): 1622-1629	4	14	7	34
2340	5127 Tian ZX, Rizzon C, Du JC, Zhu LC, Bennetzen JL, et al. Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons? GENOME RESEARCH. 2009 DEC; 19 (12): 2221-2230	0	0	4	44
#	Date / Author / Journal	LCS	GCS	LCR	CR
2341	5128 Li WT, Freudenberg J Two-parameter characterization of chromosome-scale recombination rate GENOME RESEARCH. 2009 DEC; 19 (12): 2300-2307	0	0	5	60
2342	5129 Peterson J, Garges S, Giovanni M, McInnes P, Wang L, et al. The NIH Human Microbiome Project GENOME RESEARCH. 2009 DEC; 19 (12): 2317-2323	0	0	3	30
2343	5130 Temple G, Gerhard DS, Rasooly R, Feingold EA, Good PJ, et al. The completion of the Mammalian Gene Collection (MGC) GENOME RESEARCH. 2009 DEC; 19 (12): 2324-2333	0	0	6	37
2344	5156 Lee HJ, Kim E, Kim JS Targeted chromosomal deletions in human cells using zinc finger nucleases GENOME RESEARCH. 2010 JAN; 20 (1): 81-89	0	0	3	39
2345	668 Mural RJ, Myers EW, Smith H, Miklos GLG, Wides R, et al. A preliminary comparison of the mouse and human genomes GENOME SCIENCE: TOWARDS A NEW PARADIGM?. 2002; 1246: 169-181	0	0	2	18
2346	669 Holland PWH, Copley RR, Snell EA, Furlong RF, Agapow PM Exploiting genomics in evolutionary developmental biology GENOME SCIENCE: TOWARDS A NEW PARADIGM?. 2002; 1246: 217-229	0	0	3	21
2347	670 Sugano S, Suzuki Y, Yamashita R, Nakai K Oligo-capped cDNAs for promoter identification and annotation GENOME SCIENCE: TOWARDS A NEW PARADIGM?. 2002; 1246: 233-239	0	0	3	17
2348	229 Xue Q, Yu Y, Trilk SL, Jong BE, Schumacher MA The genomic organization of the gene encoding the vanilloid receptor: Evidence for multiple splice variants GENOMICS. 2001 AUG; 76 (1-3): 14-20	0	23	1	30
2349	289 Das M, Burge CB, Park E, Colinas J, Pelletier J Assessment of the total number of human transcription units GENOMICS. 2001 SEP; 77 (1-2): 71-78	17	38	2	28
2350	370 Rogers J, Bradley A The mouse genome sequence: Status and prospects GENOMICS. 2001 OCT; 77 (3): 117-118	3	5	2	3
#	Date / Author / Journal	LCS	GCS	LCR	CR
2351	453 Reymond A, Friedli M, Henrichsen CN, Chapot F, Deutsch S, et al. From PREDs and open reading frames to cDNA isolation: Revisiting the human chromosome 21 transcription map GENOMICS. 2001 NOV; 78 (1-2): 46-54	8	24	2	30
2352	539 Vigneau S, Levillayer F, Crespeau H, Cattolico L, Caudron B, et al. Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15 GENOMICS. 2001 DEC; 78 (3): 206-213	0	4	3	42
2353	743 Nal B, Mohr E, Da Silva MI, Tagett R, Navarro C, et al. Wdr12, a mouse gene encoding a novel WD-repeat protein with a notchless-like amino-terminal domain GENOMICS. 2002 JAN; 79 (1): 77-86	0	6	3	42
2354	821 Kurihara LJ, Semenova E, Miller W, Ingram RS, Guan XJ, et al. Candidate genes required for embryonic development: A comparative analysis of distal mouse chromosome 14 and human chromosome 13q22 GENOMICS. 2002 FEB; 79 (2): 154-161	2	10	2	53
2355	822 Sierra DA, Gilbert DJ, Householder D, Grishin NV, Yu K, et al. Evolution of the regulators of G-protein signaling multigene family in mouse and human GENOMICS. 2002 FEB; 79 (2): 177-185	1	39	2	51
2356	890 Zhang SX, Krahe R Physical and transcript map of a 2-Mb region in Xp22.1 containing candidate genes for X-linked mental retardation and short stature GENOMICS. 2002 MAR; 79 (3): 274-277	0	1	2	19
2357	891 Ottolenghi C, Fellous M, Barbieri M, McElreavey K Novel paralogy relations among human chromosomes support a link between the phylogeny of doublesex-related genes and the evolution of sex determination GENOMICS. 2002 MAR; 79 (3): 333-343	1	39	3	49
2358	892 Buzdin A, Khodosevich K, Mamedov I, Vinogradova T, Lebedev Y, et al. A technique for genome-wide identification of differences in the interspersed repeats integrations between closely related genomes and its application to detection of human-specific integrations of HERV-K LTRs GENOMICS. 2002 MAR; 79 (3): 413-422	3	20	2	42
2359	893 Yang RZ, Blaileanu G, Hansen BC, Shuldiner AR, Gong DW cDNA cloning, genomic structure, chromosomal mapping, and functional expression of a novel human alanine aminotransferase GENOMICS. 2002 MAR; 79 (3): 445-450	0	16	2	29
2360	962 Wain HM, Bruford EA, Lovering RC, Lush MJ, Wright MW, et al. Guidelines for human gene nomenclature GENOMICS. 2002 APR; 79 (4): 464-470	8	129	2	15
#	Date / Author / Journal	LCS	GCS	LCR	CR
2361	963 Pietas A, Schluns K, Marenholz I, Schafer BW, Heizmann CW, et al. Molecular cloning and characterization of the human S100A14 gene encoding a novel member of the S100 family GENOMICS. 2002 APR; 79 (4): 513-522	0	23	1	26
2362	964 Rowen L, Young J, Birditt B, Kaur A, Madan A, et al. Analysis of the human neurexin genes: Alternative splicing and the generation of protein diversity GENOMICS. 2002 APR; 79 (4): 587-597	5	55	3	40
2363	1044 Christian SL, McDonough J, Liu CY, Shaikh S, Vlamakis V, et al. An evaluation of the assembly of an approximately 15-Mb region on human chromosome 13q32-q33 linked to bipolar disorder and schizophrenia GENOMICS. 2002 MAY; 79 (5): 635-656	3	14	3	40
2364	1045 Taylor SL, Renshaw BR, Garka KE, Smith DE, Sims JE Genomic organization of the interleukin-1 locus GENOMICS. 2002 MAY; 79 (5): 726-733	0	30	2	23
2365	1125 Steele FR Genome sequence reveals human nature GENOMICS. 2002 JUN; 79 (6): 747-747	0	0	2	2
2366	1126 Reymond A, Camargo AA, Deutsch S, Stevenson BJ, Parmigiani RB, et al. Nineteen additional unpredicted transcripts from human chromosome 21 GENOMICS. 2002 JUN; 79 (6): 824-832	10	34	5	49
2367	1198 Tourmen Y, Baris O, Dessen P, Jacques C, Malthiery Y, et al. Structure and chromosomal distribution of human mitochondrial pseudogenes GENOMICS. 2002 JUL; 80 (1): 71-77	3	58	2	22
2368	1257 Li SY, Liao JY, Cutler G, Hoey T, Hogenesch JB, et al. Comparative analysis of human genome assemblies reveals genome-level differences GENOMICS. 2002 AUG; 80 (2): 138-139	5	6	5	8
2369	1258 Peterson KA, King BL, Hagge-Greenberg A, Roix JJ, Bult CJ, et al. Functional and comparative genomic analysis of the piebald deletion region of mouse chromosome 14 GENOMICS. 2002 AUG; 80 (2): 172-184	2	13	5	50
2370	1259 Anisimov SV, Tarasov KV, Stern MD, Lakatta EG, Boheler KR A quantitative and validated SAGE transcriptome reference for adult mouse heart GENOMICS. 2002 AUG; 80 (2): 213-222	5	26	4	38
#	Date / Author / Journal	LCS	GCS	LCR	CR
2371	1315 Fuchs T, Malecova B, Linhart C, Sharan R, Khen M, et al. DEFOG: A practical scheme for deciphering families of genes GENOMICS. 2002 SEP; 80 (3): 295-302	0	7	2	39
2372	1316 Powell JA, Gardner AE, Bais AJ, Hinze SJ, Baker E, et al. Sequencing, transcript identification, and quantitative gene expression profiling in the breast cancer loss of heterozygosity region 16q24.3 reveal three potential tumor-suppressor genes GENOMICS. 2002 SEP; 80 (3): 303-310	1	17	2	48
2373	1436 Hughes JF, Coffin JM A novel endogenous retrovirus-related element in the human genome resembles a DNA transposon: Evidence for an evolutionary link? GENOMICS. 2002 NOV; 80 (5): 453-455	2	6	2	9
2374	1437 Dass B, McDaniel L, Schultz RA, Attaya E, MacDonald CC The gene CSTF2T, encoding the human variant CstF-64 polyadenylation protein tau CstF-64, lacks Introns and may be associated with male sterility GENOMICS. 2002 NOV; 80 (5): 509-514	1	9	3	46
2375	1763 Sidjanin DJ, Miller B, Kijas J, McElwee J, Pillardy J, et al. Radiation hybrid map, physical map, and low-pass genomic sequence of the canine prcd region on CFA9 and comparative mapping with the syntenic region on human chromosome 17 GENOMICS. 2003 FEB; 81 (2): 138-148	0	11	1	32
2376	1816 Lee A, Rana BK, Schiffer HH, Schor, k NJ, et al. Distribution analysis of nonsynonymous polymorphisms within the G-protein-coupled receptor gene family GENOMICS. 2003 MAR; 81 (3): 245-248	2	16	3	22
2377	1817 Xu YH, Stange-Thomann N, Weber G, Bo RH, Dodge S, et al. Pathogen discovery from human tissue by sequence-based computational subtraction GENOMICS. 2003 MAR; 81 (3): 329-335	0	12	3	18
2378	1943 Barrans JD, Ip J, Lam CW, Hwang IL, Dzau VJ, et al. Chromosomal distribution of the human cardiovascular transcriptome GENOMICS. 2003 MAY; 81 (5): 519-524	1	11	3	29
2379	2076 Lowe JK, Kukekova AV, Kirkness EF, Langlois MC, Aguirre GD, et al. Linkage mapping of the primary disease locus for collie eye anomaly GENOMICS. 2003 JUL; 82 (1): 86-95	1	17	1	58
2380	2182 Lin BY, White JT, Utleg AG, Wang SY, Ferguson C, et al. Isolation and characterization of human and mouse WDR19, a novel WD-repeat protein exhibiting androgen-regulated expression in prostate epithelium GENOMICS. 2003 SEP; 82 (3): 331-342	1	5	1	44
#	Date / Author / Journal	LCS	GCS	LCR	CR
2381	2276 Kim CG, Fujiyama A, Saitou N Construction of a gorilla fosmid library and its PCR screening system GENOMICS. 2003 NOV; 82 (5): 571-574	0	17	3	18
2382	2484 Vialle-Castellano A, Laduron S, De Plaen E, Jost E, Dupont S, et al. A gene expressed exclusively in acute B lymphoblastic leukemias GENOMICS. 2004 JAN; 83 (1): 85-94	0	0	1	50
2383	2552 Klysik J, Dinh C, Bradley A Two new mouse chromosome 11 balancers GENOMICS. 2004 FEB; 83 (2): 303-310	1	9	2	34
2384	2644 Onishi M, Yasunaga T, Tanaka H, Nishimune Y, Nozaki M Gene structure and evolution of testicular haploid germ cell-specific genes, Oxct2a and Oxct2b GENOMICS. 2004 APR; 83 (4): 647-657	0	4	3	45
2385	2645 Baranova A, Ivanova DV, Petrash N, Pestova A, Skoblov M, et al. The mammalian pannexin family is homologous to the invertebrate innexin gap junction proteins GENOMICS. 2004 APR; 83 (4): 706-716	0	69	2	30
2386	2697 Pimenta AF, Levitt P Characterization of the genomic structure of the mouse limbic system-associated membrane protein (Lsamp) gene GENOMICS. 2004 MAY; 83 (5): 790-801	0	7	3	67
2387	2698 Petkov PM, Cassell MA, Sargent EE, Donnelly CJ, Robinson P, et al. Development of a SNP genotyping panel for genetic monitoring of the laboratory mouse GENOMICS. 2004 MAY; 83 (5): 902-911	0	21	1	26
2388	2751 Beisel KW, Shiraki T, Morris KA, Pompeia C, Kachar B, et al. Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library GENOMICS. 2004 JUN; 83 (6): 1012-1023	0	13	8	87
2389	2752 Andelfinger G, Hitte C, Etter L, Guyon R, Bourque G, et al. Detailed four-way comparative mapping and gene order analysis of the canine ctvm locus reveals evolutionary chromosome rearrangements GENOMICS. 2004 JUN; 83 (6): 1053-1062	1	12	3	27
2390	2753 Ohtsuka M, Kikuchi N, Ozato K, Inoko H, Kimura M Comparative analysis of a 229-kb medaka genomic region, containing the zic1 and zic4 genes, with Fugu, human, and mouse GENOMICS. 2004 JUN; 83 (6): 1063-1071	0	3	8	30
#	Date / Author / Journal	LCS	GCS	LCR	CR
2391	2849 Roginski RS, Raj BKM, Birditt B, Rowen L The human GRINL1A gene defines a complex transcription unit, an unusual form of gene organization in eukaryotes GENOMICS. 2004 AUG; 84 (2): 265-276	0	5	4	24
2392	2850 Cohen M, Reichenstein M, Everts-van der Wind A, Heon-Lee J, Shani M, et al. Cloning and characterization of FAM13A1 - a gene near a milk protein QTL on BTA6: evidence for population-wide linkage disequilibrium in Israeli Holsteins GENOMICS. 2004 AUG; 84 (2): 374-383	0	8	2	38
2393	2890 Dunston JA, Hamlington JD, Zaveri J, Sweeney E, Sibbring J, et al. The human LMX1B gene: transcription unit, promoter, and pathogenic mutations GENOMICS. 2004 SEP; 84 (3): 565-576	0	17	3	48
2394	2933 Chong A, Zhang GL, Bajic VB Information for the Coordinates of Exons (ICE): a human splice sites database GENOMICS. 2004 OCT; 84 (4): 762-766	0	17	4	24
2395	2973 Zhang FK, Zhao ZM The influence of neighboring-nucleotide composition on single nucleotide polymorphisms (SNPs) in the mouse genome and its comparison with human SNPs GENOMICS. 2004 NOV; 84 (5): 785-795	1	9	5	25
2396	3009 Bina M, Wyss P, Ren WH, Szpankowski W, Thomas E, et al. Exploring the characteristics of sequence elements in proximal promoters of human genes GENOMICS. 2004 DEC; 84 (6): 929-940	1	8	6	50
2397	3261 Itoh T, Watanabe T, Ihara N, Mariani P, Beattie CW, et al. A comprehensive radiation hybrid map of the bovine genome comprising 5593 loci GENOMICS. 2005 APR; 85 (4): 413-424	2	50	5	25
2398	3262 Kralovicova J, Vorechovsky I Intergenic transcripts in genes with phase I introns GENOMICS. 2005 APR; 85 (4): 431-440	0	1	3	50
2399	3263 McClure MA, Richardson HS, Clinton RA, Hepp CM, Crowther BA, et al. Automated characterization of potentially active retroid agents in the human genome GENOMICS. 2005 APR; 85 (4): 512-523	0	8	3	56
2400	3326 Lagerstrom MC, Fredriksson R, Bjarnadottir TK, Fridmanis D, Holmquist T, et al. Origin of the prolactin-releasing hormone (PRLH) receptors: Evidence of coevolution between PRLH and a redundant neuropeptide Y receptor during vertebrate evolution GENOMICS. 2005 JUN; 85 (6): 688-703	1	10	4	62

Date / Author / Journal

LCS

GCS

LCR

2301

3529 Dolinski K, Botstein D

Changing perspectives in yeast research nearly a decade after the genome sequence

GENOME RESEARCH. 2005 DEC; 15 (12): 1611-1619

103

2302

3530 Little PFR

Structure and function of the human genome

GENOME RESEARCH. 2005 DEC; 15 (12): 1759-1766

2303

3531 Brent MR

Genome annotation past, present, and future: How to define an ORF at each locus

GENOME RESEARCH. 2005 DEC; 15 (12): 1777-1786

2304

3532 Wang W, Kirkness EF

Short interspersed elements (SINEs) are a major source of canine genomic diversity

GENOME RESEARCH. 2005 DEC; 15 (12): 1798-1808

2305

3725 Vinogradov AE

"Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison

GENOME RESEARCH. 2006 MAR; 16 (3): 347-354

2306

3726 Volik S, Raphael BJ, Huang GQ, Stratton MR, Bignel G, et al.

Decoding the fine-scale structure of a breast cancer genome and transcriptome

GENOME RESEARCH. 2006 MAR; 16 (3): 394-404

2307

3801 Ohno M, Miura T, Furuichi M, Tominaga Y, Tsuchimoto D, et al.

A genome-wide distribution of 8-oxoguanine correlates with the preferred regions for recombination and single nucleotide polymorphism in the human genome

GENOME RESEARCH. 2006 MAY; 16 (5): 567-575

2308

3802 Huntley S, Baggott DM, Hamilton AT, Tran-Gyamfi M, Yang S, et al.

A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors

GENOME RESEARCH. 2006 MAY; 16 (5): 669-677

2309

3847 Roy SW, Hartl DL

Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number

GENOME RESEARCH. 2006 JUN; 16 (6): 750-756

2310

3848 Warren RL, Varabei D, Platt D, Huang X, Messina D, et al.

Physical map-assisted whole-genome shotgun sequence assemblies

GENOME RESEARCH. 2006 JUN; 16 (6): 768-775

Date / Author / Journal

LCS

GCS

LCR

2311

3881 Sun M, Hurst LD, Carmichael GG, Chen J

Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcription and organismic complexity

GENOME RESEARCH. 2006 JUL; 16 (7): 922-933

2312

4148 Bansal V, Bashir A, Bafna V

Evidence for large inversion polymorphisms in the human genome from HapMap data

GENOME RESEARCH. 2007 FEB; 17 (2): 219-230

2313

4176 Peters BA, Croix BS, Sjoblom T, Cummins JM, Silliman N, et al.

Large-scale identification of novel transcripts in the human genome

GENOME RESEARCH. 2007 MAR; 17 (3): 287-292

2314

4260 Weinstock GM

ENCODE: More genomic empowerment

GENOME RESEARCH. 2007 JUN; 17 (6): 667-668

2315

4261 Gerstein MB, Bruce C, Rozowsky JS, Zheng DY, Du J, et al.

What is a gene, post-ENCODE? History and updated definition

GENOME RESEARCH. 2007 JUN; 17 (6): 669-681

103

2316

4262 Gingeras TR

Origin of phenotypes: Genes and transcripts

GENOME RESEARCH. 2007 JUN; 17 (6): 682-690

105

2317

4263 Denoeud F, Kapranov P, Ucla C, Frankish A, Castelo R, et al.

Prominent use of distal 5 ' transcription start sites and discovery of a large number of additional exons in ENCODE regions

GENOME RESEARCH. 2007 JUN; 17 (6): 746-759

2318

4264 Greenbaum JA, Parker SCJ, Tullius TD

Detection of DNA structural motifs in functional genomic elements

GENOME RESEARCH. 2007 JUN; 17 (6): 940-946

2319

4283 Kim JH, Waterman MS, Li LM

Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi

GENOME RESEARCH. 2007 JUL; 17 (7): 1101-1110

2320

4352 Fiston-Lavier AS, Anxolabehere D, Quesneville H

A model of segmental duplication formation in Drosophila melanogaster

GENOME RESEARCH. 2007 OCT; 17 (10): 1458-1470

Date / Author / Journal

2321

2x genomes - Does depth matter?

GENOME RESEARCH. 2007 NOV; 17 (11): 1547-1549

2322

4381 Pontius JU, Mullikin JC, Smith DR, Lindblad-Toh K, Gnerre S, et al.

Initial sequence and comparative analysis of the cat genome

GENOME RESEARCH. 2007 NOV; 17 (11): 1675-1689

102

2323

4382 Lyle R, Prandini P, Osoegawa K, ten Hallers B, Humphray S, et al.

Islands of euchromatin-like sequence and expressed of polymorphic sequences within the short arm of human chromosome 21

GENOME RESEARCH. 2007 NOV; 17 (11): 1690-1696

2324

4403 Siepel A, Diekhans M, B, rejova B, Langton L, et al.

Targeted discovery of novel human exons by comparative genomics

GENOME RESEARCH. 2007 DEC; 17 (12): 1763-1773

2325

4475 Cantarel BL, Korf I, Robb SMC, Parra G, Ross E, et al.

MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

GENOME RESEARCH. 2008 JAN; 18 (1): 188-196

2326

4513 Prachumwat A, Li WH

Gene number expansion and contraction in vertebrate genomes with respect to invertebrate genomes

GENOME RESEARCH. 2008 FEB; 18 (2): 221-232

2327

4595 Zerbino DR, Birney E

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

GENOME RESEARCH. 2008 MAY; 18 (5): 821-829

2328

4626 Holt RA, Jones SJM

The new paradigm of flow cell sequencing

GENOME RESEARCH. 2008 JUN; 18 (6): 839-846

2329

4650 Hellmann I, Mang Y, Gu ZP, Li P, de la Vega FM, et al.

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

GENOME RESEARCH. 2008 JUL; 18 (7): 1020-1029

2330

4651 Holland LZ, Albalat R, Azumi K, Benito-Gutierrez E, Blow MJ, et al.

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

GENOME RESEARCH. 2008 JUL; 18 (7): 1100-1111

Date / Author / Journal

LCS

GCS

LCR

2331

4700 Barbazuk WB, Fu Y, McGinnis KM

Genome-wide analyses of alternative splicing in plants: Opportunities and challenges

GENOME RESEARCH. 2008 SEP; 18 (9): 1381-1392

144

2332

4856 She R, Chu JSC, Wang K, Pei J, Chen NS

genBlastA: Enabling BLAST to identify homologous gene sequences

GENOME RESEARCH. 2009 JAN; 19 (1): 143-149

2333

4915 Barriere A, Yang SP, Pekarek E, Thomas CG, Haag ES, et al.

Detecting heterozygosity in shotgun genome assemblies: Lessons from obligately outcrossing nematodes

GENOME RESEARCH. 2009 MAR; 19 (3): 470-480

2334

4966 Akey JM

Constructing genomic maps of positive selection in humans: Where do we go from here?

GENOME RESEARCH. 2009 MAY; 19 (5): 711-722

123

2335

4998 Lister R, Ecker JR

Finding the fifth base: Genome-wide sequencing of cytosine methylation

GENOME RESEARCH. 2009 JUN; 19 (6): 959-966

2336

4999 Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJM, et al.

ABySS: A parallel assembler for short read sequence data

GENOME RESEARCH. 2009 JUN; 19 (6): 1117-1123

2337

5000 Li RQ, Li YR, Fang XD, Yang HM, Wang J, et al.

SNP detection for massively parallel whole-genome resequencing

GENOME RESEARCH. 2009 JUN; 19 (6): 1124-1132

2338

5059 McKernan KJ, Peckham HE, Costa GL, McLaughlin SF, Fu YT, et al.

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

GENOME RESEARCH. 2009 SEP; 19 (9): 1527-1541

2339

5060 Ahn SM, Kim TH, Lee S, Kim D, Ghang H, et al.

The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group

GENOME RESEARCH. 2009 SEP; 19 (9): 1622-1629

2340

5127 Tian ZX, Rizzon C, Du JC, Zhu LC, Bennetzen JL, et al.

Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

GENOME RESEARCH. 2009 DEC; 19 (12): 2221-2230

Date / Author / Journal

LCS

GCS

LCR

2341

5128 Li WT, Freudenberg J

Two-parameter characterization of chromosome-scale recombination rate

GENOME RESEARCH. 2009 DEC; 19 (12): 2300-2307

2342

5129 Peterson J, Garges S, Giovanni M, McInnes P, Wang L, et al.

The NIH Human Microbiome Project

GENOME RESEARCH. 2009 DEC; 19 (12): 2317-2323

2343

5130 Temple G, Gerhard DS, Rasooly R, Feingold EA, Good PJ, et al.

The completion of the Mammalian Gene Collection (MGC)

GENOME RESEARCH. 2009 DEC; 19 (12): 2324-2333

2344

5156 Lee HJ, Kim E, Kim JS

Targeted chromosomal deletions in human cells using zinc finger nucleases

GENOME RESEARCH. 2010 JAN; 20 (1): 81-89

2345

668 Mural RJ, Myers EW, Smith H, Miklos GLG, Wides R, et al.

A preliminary comparison of the mouse and human genomes

GENOME SCIENCE: TOWARDS A NEW PARADIGM?. 2002; 1246: 169-181

2346

669 Holland PWH, Copley RR, Snell EA, Furlong RF, Agapow PM

Exploiting genomics in evolutionary developmental biology

GENOME SCIENCE: TOWARDS A NEW PARADIGM?. 2002; 1246: 217-229

2347

670 Sugano S, Suzuki Y, Yamashita R, Nakai K

Oligo-capped cDNAs for promoter identification and annotation

GENOME SCIENCE: TOWARDS A NEW PARADIGM?. 2002; 1246: 233-239

2348

229 Xue Q, Yu Y, Trilk SL, Jong BE, Schumacher MA

The genomic organization of the gene encoding the vanilloid receptor: Evidence for multiple splice variants

GENOMICS. 2001 AUG; 76 (1-3): 14-20

2349

289 Das M, Burge CB, Park E, Colinas J, Pelletier J

Assessment of the total number of human transcription units

GENOMICS. 2001 SEP; 77 (1-2): 71-78

2350

370 Rogers J, Bradley A

The mouse genome sequence: Status and prospects

GENOMICS. 2001 OCT; 77 (3): 117-118

Date / Author / Journal

LCS

GCS

LCR

2351

453 Reymond A, Friedli M, Henrichsen CN, Chapot F, Deutsch S, et al.

From PREDs and open reading frames to cDNA isolation: Revisiting the human chromosome 21 transcription map

GENOMICS. 2001 NOV; 78 (1-2): 46-54

2352

539 Vigneau S, Levillayer F, Crespeau H, Cattolico L, Caudron B, et al.

Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15

GENOMICS. 2001 DEC; 78 (3): 206-213

2353

743 Nal B, Mohr E, Da Silva MI, Tagett R, Navarro C, et al.

Wdr12, a mouse gene encoding a novel WD-repeat protein with a notchless-like amino-terminal domain

GENOMICS. 2002 JAN; 79 (1): 77-86

2354

821 Kurihara LJ, Semenova E, Miller W, Ingram RS, Guan XJ, et al.

Candidate genes required for embryonic development: A comparative analysis of distal mouse chromosome 14 and human chromosome 13q22

GENOMICS. 2002 FEB; 79 (2): 154-161

2355

822 Sierra DA, Gilbert DJ, Householder D, Grishin NV, Yu K, et al.

Evolution of the regulators of G-protein signaling multigene family in mouse and human

GENOMICS. 2002 FEB; 79 (2): 177-185

2356

890 Zhang SX, Krahe R

Physical and transcript map of a 2-Mb region in Xp22.1 containing candidate genes for X-linked mental retardation and short stature

GENOMICS. 2002 MAR; 79 (3): 274-277

2357

891 Ottolenghi C, Fellous M, Barbieri M, McElreavey K

Novel paralogy relations among human chromosomes support a link between the phylogeny of doublesex-related genes and the evolution of sex determination

GENOMICS. 2002 MAR; 79 (3): 333-343

2358

892 Buzdin A, Khodosevich K, Mamedov I, Vinogradova T, Lebedev Y, et al.

A technique for genome-wide identification of differences in the interspersed repeats integrations between closely related genomes and its application to detection of human-specific integrations of HERV-K LTRs

GENOMICS. 2002 MAR; 79 (3): 413-422

2359

893 Yang RZ, Blaileanu G, Hansen BC, Shuldiner AR, Gong DW

cDNA cloning, genomic structure, chromosomal mapping, and functional expression of a novel human alanine aminotransferase

GENOMICS. 2002 MAR; 79 (3): 445-450

2360

962 Wain HM, Bruford EA, Lovering RC, Lush MJ, Wright MW, et al.

Guidelines for human gene nomenclature

GENOMICS. 2002 APR; 79 (4): 464-470

129

Date / Author / Journal

LCS

GCS

LCR

2361

963 Pietas A, Schluns K, Marenholz I, Schafer BW, Heizmann CW, et al.

Molecular cloning and characterization of the human S100A14 gene encoding a novel member of the S100 family

GENOMICS. 2002 APR; 79 (4): 513-522

2362

964 Rowen L, Young J, Birditt B, Kaur A, Madan A, et al.

Analysis of the human neurexin genes: Alternative splicing and the generation of protein diversity

GENOMICS. 2002 APR; 79 (4): 587-597

2363

1044 Christian SL, McDonough J, Liu CY, Shaikh S, Vlamakis V, et al.

An evaluation of the assembly of an approximately 15-Mb region on human chromosome 13q32-q33 linked to bipolar disorder and schizophrenia

GENOMICS. 2002 MAY; 79 (5): 635-656

2364

1045 Taylor SL, Renshaw BR, Garka KE, Smith DE, Sims JE

Genomic organization of the interleukin-1 locus

GENOMICS. 2002 MAY; 79 (5): 726-733

2365

1125 Steele FR

Genome sequence reveals human nature

GENOMICS. 2002 JUN; 79 (6): 747-747

2366

1126 Reymond A, Camargo AA, Deutsch S, Stevenson BJ, Parmigiani RB, et al.

Nineteen additional unpredicted transcripts from human chromosome 21

GENOMICS. 2002 JUN; 79 (6): 824-832

2367

1198 Tourmen Y, Baris O, Dessen P, Jacques C, Malthiery Y, et al.

Structure and chromosomal distribution of human mitochondrial pseudogenes

GENOMICS. 2002 JUL; 80 (1): 71-77

2368

1257 Li SY, Liao JY, Cutler G, Hoey T, Hogenesch JB, et al.

Comparative analysis of human genome assemblies reveals genome-level differences

GENOMICS. 2002 AUG; 80 (2): 138-139

2369

1258 Peterson KA, King BL, Hagge-Greenberg A, Roix JJ, Bult CJ, et al.

Functional and comparative genomic analysis of the piebald deletion region of mouse chromosome 14

GENOMICS. 2002 AUG; 80 (2): 172-184

2370

1259 Anisimov SV, Tarasov KV, Stern MD, Lakatta EG, Boheler KR

A quantitative and validated SAGE transcriptome reference for adult mouse heart

GENOMICS. 2002 AUG; 80 (2): 213-222

Date / Author / Journal

LCS

GCS

LCR

2371

1315 Fuchs T, Malecova B, Linhart C, Sharan R, Khen M, et al.

DEFOG: A practical scheme for deciphering families of genes

GENOMICS. 2002 SEP; 80 (3): 295-302

2372

1316 Powell JA, Gardner AE, Bais AJ, Hinze SJ, Baker E, et al.

Sequencing, transcript identification, and quantitative gene expression profiling in the breast cancer loss of heterozygosity region 16q24.3 reveal three potential tumor-suppressor genes

GENOMICS. 2002 SEP; 80 (3): 303-310

2373

1436 Hughes JF, Coffin JM

A novel endogenous retrovirus-related element in the human genome resembles a DNA transposon: Evidence for an evolutionary link?

GENOMICS. 2002 NOV; 80 (5): 453-455

2374

1437 Dass B, McDaniel L, Schultz RA, Attaya E, MacDonald CC

The gene CSTF2T, encoding the human variant CstF-64 polyadenylation protein tau CstF-64, lacks Introns and may be associated with male sterility

GENOMICS. 2002 NOV; 80 (5): 509-514

2375

1763 Sidjanin DJ, Miller B, Kijas J, McElwee J, Pillardy J, et al.

Radiation hybrid map, physical map, and low-pass genomic sequence of the canine prcd region on CFA9 and comparative mapping with the syntenic region on human chromosome 17

GENOMICS. 2003 FEB; 81 (2): 138-148

2376

1816 Lee A, Rana BK, Schiffer HH, Schor, k NJ, et al.

Distribution analysis of nonsynonymous polymorphisms within the G-protein-coupled receptor gene family

GENOMICS. 2003 MAR; 81 (3): 245-248

2377

1817 Xu YH, Stange-Thomann N, Weber G, Bo RH, Dodge S, et al.

Pathogen discovery from human tissue by sequence-based computational subtraction

GENOMICS. 2003 MAR; 81 (3): 329-335

2378

1943 Barrans JD, Ip J, Lam CW, Hwang IL, Dzau VJ, et al.

Chromosomal distribution of the human cardiovascular transcriptome

GENOMICS. 2003 MAY; 81 (5): 519-524

2379

2076 Lowe JK, Kukekova AV, Kirkness EF, Langlois MC, Aguirre GD, et al.

Linkage mapping of the primary disease locus for collie eye anomaly

GENOMICS. 2003 JUL; 82 (1): 86-95

2380

2182 Lin BY, White JT, Utleg AG, Wang SY, Ferguson C, et al.

Isolation and characterization of human and mouse WDR19, a novel WD-repeat protein exhibiting androgen-regulated expression in prostate epithelium

GENOMICS. 2003 SEP; 82 (3): 331-342

Date / Author / Journal

LCS

GCS

LCR

2381

2276 Kim CG, Fujiyama A, Saitou N

Construction of a gorilla fosmid library and its PCR screening system

GENOMICS. 2003 NOV; 82 (5): 571-574

2382

2484 Vialle-Castellano A, Laduron S, De Plaen E, Jost E, Dupont S, et al.

A gene expressed exclusively in acute B lymphoblastic leukemias

GENOMICS. 2004 JAN; 83 (1): 85-94

2383

2552 Klysik J, Dinh C, Bradley A

Two new mouse chromosome 11 balancers

GENOMICS. 2004 FEB; 83 (2): 303-310

2384

2644 Onishi M, Yasunaga T, Tanaka H, Nishimune Y, Nozaki M

Gene structure and evolution of testicular haploid germ cell-specific genes, Oxct2a and Oxct2b

GENOMICS. 2004 APR; 83 (4): 647-657

2385

2645 Baranova A, Ivanova DV, Petrash N, Pestova A, Skoblov M, et al.

The mammalian pannexin family is homologous to the invertebrate innexin gap junction proteins

GENOMICS. 2004 APR; 83 (4): 706-716

2386

2697 Pimenta AF, Levitt P

Characterization of the genomic structure of the mouse limbic system-associated membrane protein (Lsamp) gene

GENOMICS. 2004 MAY; 83 (5): 790-801

2387

2698 Petkov PM, Cassell MA, Sargent EE, Donnelly CJ, Robinson P, et al.

Development of a SNP genotyping panel for genetic monitoring of the laboratory mouse

GENOMICS. 2004 MAY; 83 (5): 902-911

2388

2751 Beisel KW, Shiraki T, Morris KA, Pompeia C, Kachar B, et al.

Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library

GENOMICS. 2004 JUN; 83 (6): 1012-1023

2389

2752 Andelfinger G, Hitte C, Etter L, Guyon R, Bourque G, et al.

Detailed four-way comparative mapping and gene order analysis of the canine ctvm locus reveals evolutionary chromosome rearrangements

GENOMICS. 2004 JUN; 83 (6): 1053-1062

2390

2753 Ohtsuka M, Kikuchi N, Ozato K, Inoko H, Kimura M

Comparative analysis of a 229-kb medaka genomic region, containing the zic1 and zic4 genes, with Fugu, human, and mouse

GENOMICS. 2004 JUN; 83 (6): 1063-1071

Date / Author / Journal

LCS

GCS

LCR

2391

2849 Roginski RS, Raj BKM, Birditt B, Rowen L

The human GRINL1A gene defines a complex transcription unit, an unusual form of gene organization in eukaryotes

GENOMICS. 2004 AUG; 84 (2): 265-276

2392

2850 Cohen M, Reichenstein M, Everts-van der Wind A, Heon-Lee J, Shani M, et al.

Cloning and characterization of FAM13A1 - a gene near a milk protein QTL on BTA6: evidence for population-wide linkage disequilibrium in Israeli Holsteins

GENOMICS. 2004 AUG; 84 (2): 374-383

2393

2890 Dunston JA, Hamlington JD, Zaveri J, Sweeney E, Sibbring J, et al.

The human LMX1B gene: transcription unit, promoter, and pathogenic mutations

GENOMICS. 2004 SEP; 84 (3): 565-576

2394

2933 Chong A, Zhang GL, Bajic VB

Information for the Coordinates of Exons (ICE): a human splice sites database

GENOMICS. 2004 OCT; 84 (4): 762-766

2395

2973 Zhang FK, Zhao ZM

The influence of neighboring-nucleotide composition on single nucleotide polymorphisms (SNPs) in the mouse genome and its comparison with human SNPs

GENOMICS. 2004 NOV; 84 (5): 785-795

2396

3009 Bina M, Wyss P, Ren WH, Szpankowski W, Thomas E, et al.

Exploring the characteristics of sequence elements in proximal promoters of human genes

GENOMICS. 2004 DEC; 84 (6): 929-940

2397

3261 Itoh T, Watanabe T, Ihara N, Mariani P, Beattie CW, et al.

A comprehensive radiation hybrid map of the bovine genome comprising 5593 loci

GENOMICS. 2005 APR; 85 (4): 413-424

2398

3262 Kralovicova J, Vorechovsky I

Intergenic transcripts in genes with phase I introns

GENOMICS. 2005 APR; 85 (4): 431-440

2399

3263 McClure MA, Richardson HS, Clinton RA, Hepp CM, Crowther BA, et al.

Automated characterization of potentially active retroid agents in the human genome

GENOMICS. 2005 APR; 85 (4): 512-523

2400

3326 Lagerstrom MC, Fredriksson R, Bjarnadottir TK, Fridmanis D, Holmquist T, et al.

Origin of the prolactin-releasing hormone (PRLH) receptors: Evidence of coevolution between PRLH and a redundant neuropeptide Y receptor during vertebrate evolution

GENOMICS. 2005 JUN; 85 (6): 688-703

The sequence of the human genome (Venter) The papers citing Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al. "The sequence of the human genome." SCIENCE. 2001 FEB 16; 291 (5507): 1304	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 18020, GCS 180410, CR 319862 Collection span: 2000 - 2010
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