HistCite - The sequence of the human genome (Venter)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
301	92 Kumar A, Snyder M Emerging technologies in yeast genomics NATURE REVIEWS GENETICS. 2001 APR; 2 (4): 302-312	6	54	2	70
302	97 Hazbun TR, Fields S Networking proteins in yeast PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 APR 10; 98 (8): 4277-4278	6	50	2	20
303	132 Thornton JW Evolution of vertebrate steroid receptors from an ancestral estrogen receptor by ligand exploitation and serial genome expansions PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 MAY 8; 98 (10): 5671-5676	6	176	1	46
304	157 Fischer SEJ, Wienholds E, Plasterk RHA Regulated transposition of a fish transposon in the mouse germ line PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 JUN 5; 98 (12): 6759-6764	6	118	2	51
305	160 Andersson JO, Doolittle WF, Nesbo CL Genomics - Are there bugs in our genome? SCIENCE. 2001 JUN 8; 292 (5523): 1848-1850	6	40	3	14
306	166 O'Brien SJ, Eizirik E, Murphy WJ Genomics - On choosing mammalian genomes for sequencing SCIENCE. 2001 JUN 22; 292 (5525): 2264-2266	6	42	5	22
307	196 Dai ZY, Lakshmanan RR, Zhu WG, Smiraglia DJ, Rush LJ, et al. Global methylation profiling of lung cancer identifies novel methylated genes NEOPLASIA. 2001 JUL-AUG; 3 (4): 314-323	6	43	2	59
308	213 Subrahmanyan L, Eberle MA, Clark AG, Kruglyak L, Nickerson DA Sequence variation and linkage disequilibrium in the human T-cell receptor beta (TCRB) locus AMERICAN JOURNAL OF HUMAN GENETICS. 2001 AUG; 69 (2): 381-395	6	35	1	61
309	232 Black AR, Black JD, Azizkhan-Clifford J Sp1 and kruppel-like factor family of transcription factors in cell growth regulation and cancer JOURNAL OF CELLULAR PHYSIOLOGY. 2001 AUG; 188 (2): 143-160	6	418	2	267
310	288 Beaudoing E, Gautheret D Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data GENOME RESEARCH. 2001 SEP; 11 (9): 1520-1526	6	81	2	20
#	Date / Author / Journal	LCS	GCS	LCR	CR
311	351 Roberts MA, Mutch DM, German JB Genomics: food and nutrition CURRENT OPINION IN BIOTECHNOLOGY. 2001 OCT; 12 (5): 516-522	6	21	2	36
312	385 Choudhary JS, Blackstock WP, Creasy DM, Cottrell JS Matching peptide mass spectra to EST and genomic DNA databases TRENDS IN BIOTECHNOLOGY. 2001 OCT; 19 (10): S17-S22	6	33	2	24
313	411 Goldstrohm AC, Greenleaf AL, Garcia-Blanco MA Co-transcriptional splicing of pre-messenger RNAs: considerations for the mechanism of alternative splicing GENE. 2001 OCT 17; 277 (1-2): 31-47	6	93	3	137
314	434 Li FG, Stormo GD Selection of optimal DNA oligos for gene expression arrays BIOINFORMATICS. 2001 NOV; 17 (11): 1067-1076	6	117	1	28
315	489 Saha S, Bardelli A, Buckhaults P, Velculescu VE, Rago C, et al. A phosphatase associated with metastasis of colorectal cancer SCIENCE. 2001 NOV 9; 294 (5545): 1343-1346	6	238	2	24
316	491 McKusick VA The anatomy of the human genome - A neo-Vesalian basis for medicine in the 21st century JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION. 2001 NOV 14; 286 (18): 2289-2295	6	25	2	62
317	550 Hodgson G, Hager JH, Volik S, Hariono S, Wernick M, et al. Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas NATURE GENETICS. 2001 DEC; 29 (4): 459-464	6	172	2	25
318	565 Reiss T Drug discovery of the future: the implications of the human genome project TRENDS IN BIOTECHNOLOGY. 2001 DEC; 19 (12): 496-499	6	22	3	19
319	614 Birney E, Clamp M, Hubbard T Databases and tools for browsing genomes ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2002; 3: 293-310	6	18	6	42
320	741 Bourque G, Pevzner PA Genome-scale evolution: Reconstructing gene orders in the ancestral species GENOME RESEARCH. 2002 JAN; 12 (1): 26-36	6	154	2	39
#	Date / Author / Journal	LCS	GCS	LCR	CR
321	742 Nekrutenko A, Makova KD, Li WH The K-A/K-S ratio test for assessing the protein-coding potential of genomic regions: An empirical and simulation study GENOME RESEARCH. 2002 JAN; 12 (1): 198-202	6	70	2	13
322	796 Ferrer-Costa C, Orozco M, de la Cruz X Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties JOURNAL OF MOLECULAR BIOLOGY. 2002 JAN 25; 315 (4): 771-786	6	66	2	52
323	885 Pavlicek A, Paces J, Elleder D, Hejnar J Processed Pseudogenes of human endogenous retroviruses generated by LINEs: Their integration, stability, and distribution GENOME RESEARCH. 2002 MAR; 12 (3): 391-399	6	45	3	69
324	886 Semple CAM, Morris SW, Porteous DJ, Evans KL Computational comparison of human genomic sequence assemblies for a region of chromosome 4 GENOME RESEARCH. 2002 MAR; 12 (3): 424-429	6	11	5	23
325	932 Lopez MF, Melov S Applied proteomics - Mitochondrial proteins and effect on function CIRCULATION RESEARCH. 2002 MAR 8; 90 (4): 380-389	6	51	1	127
326	1039 Yu N, Chen FC, Ota S, Jorde LB, Pamilo P, et al. Larger genetic differences within Africans than between Africans and Eurasians GENETICS. 2002 MAY; 161 (1): 269-274	6	66	1	28
327	1057 Betran E, Wang W, Jin L, Long MY Evolution of the Phosphoglycerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene MOLECULAR BIOLOGY AND EVOLUTION. 2002 MAY; 19 (5): 654-663	6	23	2	49
328	1224 Schmidt A, Hall A Guanine nucleotide exchange factors for Rho GTPases: turning on the switch GENES & DEVELOPMENT. 2002 JUL 1; 16 (13): 1587-1609	6	485	4	194
329	1243 Srinivas PR, Verma M, Zhao YM, Srivastava S Proteomics for cancer biomarker discovery CLINICAL CHEMISTRY. 2002 AUG; 48 (8): 1160-1169	6	95	5	72
330	1256 Thomas JW, Prasad AB, Summers TJ, Lee-Lin SQ, Maduro VVB, et al. Parallel construction of orthologous sequence-ready clone contig maps in multiple species GENOME RESEARCH. 2002 AUG; 12 (8): 1277-1285	6	44	7	31
#	Date / Author / Journal	LCS	GCS	LCR	CR
331	1287 Little J, Bradley L, Bray MS, Clyne M, Dorman J, et al. Reporting, appraising, and integrating data on genotype prevalence and gene-disease associations AMERICAN JOURNAL OF EPIDEMIOLOGY. 2002 AUG 15; 156 (4): 300-310	6	161	1	101
332	1384 Rink A, Santschi EM, Eyer KM, Roelofs B, Hess M, et al. A first-generation EST RH comparative map of the porcine and human genome MAMMALIAN GENOME. 2002 OCT; 13 (10): 578-587	6	63	3	33
333	1394 Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, et al. Bridging structural biology and genomics: assessing protein interaction data with known complexes TRENDS IN GENETICS. 2002 OCT; 18 (10): 529-536	6	115	3	40
334	1442 Tost J, Gut VG Genotyping single nucleotide polymorphisms by mass spectrometry MASS SPECTROMETRY REVIEWS. 2002 NOV-DEC; 21 (6): 388-418	6	66	8	200
335	1720 Cutler P Protein arrays: The current state-of-the-art PROTEOMICS. 2003 JAN; 3 (1): 3-18	6	109	6	160
336	1785 Sorek R, Safer HM A novel algorithm for computational identification of contaminated EST libraries NUCLEIC ACIDS RESEARCH. 2003 FEB 1; 31 (3): 1067-1074	6	57	4	56
337	1831 Chen C, Grzegorzewski KJ, Barash S, Zhao QH, Schneider H, et al. An integrated functional genomics screening program reveals a role for BMP-9 in glucose homeostasis NATURE BIOTECHNOLOGY. 2003 MAR; 21 (3): 294-301	6	37	2	48
338	1847 Paulding CA, Ruvolo M, Haber DA The Tre2 (USP6) oncogene is a hominoid-specific gene PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 MAR 4; 100 (5): 2507-2511	6	52	6	28
339	1982 Wu YM, Yu L, Bi G, Luo KT, Zhou GJ, et al. Identification and characterization of two novel human SCAN domain-containing zinc finger genes ZNF396 and ZNF397 GENE. 2003 MAY 22; 310: 193-201	6	10	2	23
340	1986 Kryukov GV, Castellano S, Novoselov SV, Lobanov AV, Zehtab O, et al. Characterization of mammalian selenoproteomes SCIENCE. 2003 MAY 30; 300 (5624): 1439-1443	6	413	3	27
#	Date / Author / Journal	LCS	GCS	LCR	CR
341	2022 Valenzuela DM, Murphy AJ, Frendewey D, Gale NW, Economides AN, et al. High-throughput engineering of the mouse genome coupled with high-resolution expression analysis NATURE BIOTECHNOLOGY. 2003 JUN; 21 (6): 652-659	6	124	4	44
342	2090 Bader GD, Heilbut A, Andrews B, Tyers M, Hughes T, et al. Functional genomics and proteomics: charting a multidimensional map of the yeast cell TRENDS IN CELL BIOLOGY. 2003 JUL; 13 (7): 344-356	6	60	9	138
343	2106 Zhao ZM, Fu YX, Hewett-Emmett D, Boerwinkle E Investigating single nucleotide polymorphism (SNP) density in the human genome and its implications for molecular evolution GENE. 2003 JUL 17; 312: 207-213	6	55	3	25
344	2140 Vienne A, Rasmussen J, Abi-Rached L, Pontarotti P, Gilles A Systematic phylogenomic evidence of en bloc duplication of the ancestral 8p11.21-8p21.3-like region MOLECULAR BIOLOGY AND EVOLUTION. 2003 AUG; 20 (8): 1290-1298	6	24	5	46
345	2159 Mattick JS The human genome and the future of medicine MEDICAL JOURNAL OF AUSTRALIA. 2003 AUG 18; 179 (4): 212-216	6	15	6	28
346	2209 Hoogendoorn B, Coleman SL, Guy CA, Smith K, Bowen T, et al. Functional analysis of human promoter polymorphisms HUMAN MOLECULAR GENETICS. 2003 SEP 15; 12 (18): 2249-2254	6	87	3	28
347	2281 Bonizzoni P, Della Vedova G, Dondi R, Li J The haplotyping problem: An overview of computational models and solutions JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY. 2003 NOV; 18 (6): 675-688	6	32	3	29
348	2412 Huang H, Winter EE, Wang HJ, Weinstock KG, Xing HM, et al. Evolutionary conservation and selection of human disease gene orthologs in the rat and mouse genomes GENOME BIOLOGY. 2004; 5 (7): Art. No. R47	6	35	4	49
349	2512 Kreahling J, Graveley BR The origins and implications of Aluternative splicing TRENDS IN GENETICS. 2004 JAN; 20 (1): 1-4	6	42	5	25
350	2655 Bredel M, Jacoby E Chemogenomics: An emerging strategy for rapid target and drug discovery NATURE REVIEWS GENETICS. 2004 APR; 5 (4): 262-275	6	88	6	144
#	Date / Author / Journal	LCS	GCS	LCR	CR
351	2695 Dermitzakis ET, Kirkness E, Schwarz S, Birney E, Reymond A, et al. Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment GENOME RESEARCH. 2004 MAY; 14 (5): 852-859	6	44	5	32
352	2713 Garcia-Blanco MA, Baraniak AP, Lasda EL Alternative splicing in disease and therapy NATURE BIOTECHNOLOGY. 2004 MAY; 22 (5): 535-546	6	180	7	187
353	2731 Parker HG, Kim LV, Sutter NB, Carlson S, Lorentzen TD, et al. Genetic structure of the purebred domestic dog SCIENCE. 2004 MAY 21; 304 (5674): 1160-1164	6	159	1	29
354	2734 Bentley DR Genomes for medicine NATURE. 2004 MAY 27; 429 (6990): 440-445	6	27	12	60
355	2804 Greenberg HJ, Hart WE, Lancia G Opportunities for combinatorial optimization in computational biology INFORMS JOURNAL ON COMPUTING. 2004 SUM; 16 (3): 211-231	6	27	5	87
356	2808 Yano Y, Saito R, Yoshida N, Yoshiki A, Wynshaw-Boris A, et al. A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene JOURNAL OF MOLECULAR MEDICINE-JMM. 2004 JUL; 82 (7): 414-422	6	30	10	68
357	2897 Weinshilboum R, Wang LW Pharmacogenomics: Bench to bedside NATURE REVIEWS DRUG DISCOVERY. 2004 SEP; 3 (9): 739-748	6	70	3	71
358	2985 Lin S, Chakravarti A, Cutler DJ Exhaustive allelic transmission disequilibrium tests as a new approach to genome-wide association studies NATURE GENETICS. 2004 NOV; 36 (11): 1181-1188	6	82	2	42
359	2986 Kramer R, Cohen D Functional genomics to new drug targets NATURE REVIEWS DRUG DISCOVERY. 2004 NOV; 3 (11): 965-972	6	60	4	77
360	3020 Blancafort P, Segal DJ, Barbas CF Designing transcription factor architectures for drug discovery MOLECULAR PHARMACOLOGY. 2004 DEC; 66 (6): 1361-1371	6	69	8	99
#	Date / Author / Journal	LCS	GCS	LCR	CR
361	3206 Chiesl TN, Shi W, Barron AE Poly(acrylamide-co-alkylacrylamides) for electrophoretic DNA purification in microchannels ANALYTICAL CHEMISTRY. 2005 FEB 1; 77 (3): 772-779	6	24	3	44
362	3308 Schioth HB, Fredriksson R The GRAFS classification system of G-protein coupled receptors in comparative perspective GENERAL AND COMPARATIVE ENDOCRINOLOGY. 2005 MAY 15; 142 (1-2): 94-101	6	23	1	43
363	3320 Lejeune F, Maquat LE Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells CURRENT OPINION IN CELL BIOLOGY. 2005 JUN; 17 (3): 309-315	6	146	3	68
364	3329 Dew IM, Walenz B, Sutton G A tool for analyzing mate pairs in assemblies (TAMPA) JOURNAL OF COMPUTATIONAL BIOLOGY. 2005 JUN; 12 (5): 497-513	6	9	9	19
365	3430 Barr SD, Leipzig J, Shinn P, Ecker JR, Bushman FD Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome JOURNAL OF VIROLOGY. 2005 SEP; 79 (18): 12035-12044	6	25	7	33
366	3431 Yates JR, Gilchrist A, Howell KE, Bergeron JJM Proteomics of organelles and large cellular structures NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2005 SEP; 6 (9): 702-714	6	134	5	107
367	3624 Thingholm TE, Jorgensen TJD, Jensen ON, Larsen MR Highly selective enrichment of phosphorylated peptides using titanium dioxide NATURE PROTOCOLS. 2006; 1 (4): 1929-1935	6	63	2	33
368	3682 Saxonov S, Berg P, Brutlag DL A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JAN 31; 103 (5): 1412-1417	6	94	8	45
369	3698 Ciuffi A, Mitchell RS, Hoffmann C, Leipzig J, Shinn P, et al. Integration site selection by and growth-arrested HIV-Based vectors in dividing IMR-90 lung fibroblasts MOLECULAR THERAPY. 2006 FEB; 13 (2): 366-373	6	28	5	27
370	3802 Huntley S, Baggott DM, Hamilton AT, Tran-Gyamfi M, Yang S, et al. A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors GENOME RESEARCH. 2006 MAY; 16 (5): 669-677	6	42	12	60
#	Date / Author / Journal	LCS	GCS	LCR	CR
371	3870 Sabeti PC, Schaffner SF, Fry B, Lohmueller J, Varilly P, et al. Positive natural selection in the human lineage SCIENCE. 2006 JUN 16; 312 (5780): 1614-1620	6	177	8	73
372	4249 Sundquist A, Ronaghi M, Tang HX, Pevzner P, Batzoglou S Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies PLOS ONE. 2007 MAY 30; 2 (5): Art. No. e484	6	32	9	35
373	4359 Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, et al. The diploid genome sequence of an individual human PLOS BIOLOGY. 2007 OCT; 5 (10): 2113-2144	6	15	27	106
374	13 Mackay TFC The genetic architecture of quantitative traits ANNUAL REVIEW OF GENETICS. 2001; 35: 303-339	5	333	2	251
375	57 Macri J, Rapundalo ST Application of proteomics to the study of cardiovascular biology TRENDS IN CARDIOVASCULAR MEDICINE. 2001 FEB; 11 (2): 66-75	5	32	1	96
376	60 Olson MV The maps - Clone by clone by clone NATURE. 2001 FEB 15; 409 (6822): 816-818	5	9	1	11
377	130 Shevchenko A, Sunyaev S, Loboda A, Shevehenko A, Bork P, et al. Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time of flight mass spectrometry and BLAST homology searching ANALYTICAL CHEMISTRY. 2001 MAY 1; 73 (9): 1917-1926	5	274	2	48
378	131 Schwartz RS Racial profiling in medical research. NEW ENGLAND JOURNAL OF MEDICINE. 2001 MAY 3; 344 (18): 1392-1393	5	188	2	13
379	143 Sreekumar KR, Aravind L, Koonin EV Computational analysis of human disease-associated genes and their protein products CURRENT OPINION IN GENETICS & DEVELOPMENT. 2001 JUN; 11 (3): 247-257	5	10	2	100
380	144 Kole R, Sazani P Antisense effects in the cell nucleus: Modification of splicing CURRENT OPINION IN MOLECULAR THERAPEUTICS. 2001 JUN; 3 (3): 229-234	5	52	2	37
#	Date / Author / Journal	LCS	GCS	LCR	CR
381	201 Maggio ET, Ramnarayan K Recent developments in computational proteomics TRENDS IN BIOTECHNOLOGY. 2001 JUL; 19 (7): 266-272	5	29	2	30
382	243 Huang S Genomics, complexity and drug discovery: insights from Boolean network models of cellular regulation PHARMACOGENOMICS. 2001 AUG; 2 (3): 203-222	5	35	3	91
383	265 Fruhwald MC, O'Dorisio MS, Dai ZY, Tanner SM, Balster DA, et al. Aberrant promoter methylation of previously unidentified target genes is a common abnormality in medulloblastomas - Implications for tumor biology and potential clinical utility ONCOGENE. 2001 AUG 16; 20 (36): 5033-5042	5	54	1	39
384	325 Lee DK, Nguyen T, Lynch KR, Cheng R, Vanti WB, et al. Discovery and mapping of ten novel G protein-coupled receptor genes GENE. 2001 SEP 5; 275 (1): 83-91	5	60	1	33
385	379 Brenner SE A tour of structural genomics NATURE REVIEWS GENETICS. 2001 OCT; 2 (10): 801-809	5	97	3	125
386	384 Liu JF, Rost B Comparing function and structure between entire proteomes PROTEIN SCIENCE. 2001 OCT; 10 (10): 1970-1979	5	102	1	79
387	393 Bajorath J Rational drug discovery revisited: interfacing experimental programs with bio-and chemo-informatics DRUG DISCOVERY TODAY. 2001 OCT 1; 6 (19): 989-995	5	26	2	56
388	441 Mitnik L, Novotny M, Felten C, Buonocore S, Koutny L, et al. Recent advances in DNA sequencing by capillary and microdevice electrophoresis ELECTROPHORESIS. 2001 NOV; 22 (19): 4104-4117	5	33	2	106
389	449 Chen R, Bouck JB, Weinstock GM, Gibbs RA Comparing vertebrate whole-genome shotgun reads to the human genome GENOME RESEARCH. 2001 NOV; 11 (11): 1807-1816	5	12	2	15
390	499 Bang ML, Centner T, Fornoff F, Geach AJ, Gotthardt M, et al. The complete gene sequence of titin, expression of an unusual approximate to 700-kDa titin isoform, and its interaction with obscurin identify a novel Z-line to I-band linking system CIRCULATION RESEARCH. 2001 NOV 23; 89 (11): 1065-1072	5	175	2	39
#	Date / Author / Journal	LCS	GCS	LCR	CR
391	502 Kwok PY Genomics - Genetic association by whole-genome analysis? SCIENCE. 2001 NOV 23; 294 (5547): 1669-1670	5	17	2	5
392	515 Yu J, Hu SN, Wang J, Li SG, Wong KSG, et al. A draft sequence of the rice (Oryza sativa ssp indica) genome CHINESE SCIENCE BULLETIN. 2001 DEC; 46 (23): 1937-1942	5	18	2	20
393	525 Sankoff D Gene and genome duplication CURRENT OPINION IN GENETICS & DEVELOPMENT. 2001 DEC; 11 (6): 681-684	5	53	3	48
394	674 Matyas G, Giunta C, Steinmann B, Hossle JP, Hellwig R Quantification of single nucleotide polymorphisms: A novel method that combines primer extension assay and capillary electrophoresis HUMAN MUTATION. 2002; 19 (1): 58-68	5	30	1	47
395	838 Hoving S, Gerrits B, Voshol H, Muller D, Roberts RC, et al. Preparative two-dimensional gel electrophoresis at alkaline pH using narrow range immobilized pH gradients PROTEOMICS. 2002 FEB; 2 (2): 127-134	5	75	1	29
396	864 Stone JR, Maki JL, Blacklow SC, Collins T The SCAN domain of ZNF174 is a dimer JOURNAL OF BIOLOGICAL CHEMISTRY. 2002 FEB 15; 277 (7): 5448-5452	5	19	3	23
397	866 Maniatis N, Collins A, Xu CF, McCarthy LC, Hewett DR, et al. The first linkage disequilibrium (LD) maps: Delineation of hot and cold blocks by diplotype analysis PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 FEB 19; 99 (4): 2228-2233	5	102	3	32
398	907 Yaffe MB Phosphotyrosine-binding domains in signal transduction NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2002 MAR; 3 (3): 177-186	5	111	1	148
399	964 Rowen L, Young J, Birditt B, Kaur A, Madan A, et al. Analysis of the human neurexin genes: Alternative splicing and the generation of protein diversity GENOMICS. 2002 APR; 79 (4): 587-597	5	55	3	40
400	1019 Bayat A Science, medicine, and the future - Bioinformatics BRITISH MEDICAL JOURNAL. 2002 APR 27; 324 (7344): 1018-1022	5	19	4	19

Date / Author / Journal

301

Emerging technologies in yeast genomics

NATURE REVIEWS GENETICS. 2001 APR; 2 (4): 302-312

302

97 Hazbun TR, Fields S

Networking proteins in yeast

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 APR 10; 98 (8): 4277-4278

303

132 Thornton JW

Evolution of vertebrate steroid receptors from an ancestral estrogen receptor by ligand exploitation and serial genome expansions

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 MAY 8; 98 (10): 5671-5676

176

304

157 Fischer SEJ, Wienholds E, Plasterk RHA

Regulated transposition of a fish transposon in the mouse germ line

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 JUN 5; 98 (12): 6759-6764

118

305

160 Andersson JO, Doolittle WF, Nesbo CL

Genomics - Are there bugs in our genome?

SCIENCE. 2001 JUN 8; 292 (5523): 1848-1850

306

166 O'Brien SJ, Eizirik E, Murphy WJ

Genomics - On choosing mammalian genomes for sequencing

SCIENCE. 2001 JUN 22; 292 (5525): 2264-2266

307

196 Dai ZY, Lakshmanan RR, Zhu WG, Smiraglia DJ, Rush LJ, et al.

Global methylation profiling of lung cancer identifies novel methylated genes

NEOPLASIA. 2001 JUL-AUG; 3 (4): 314-323

308

213 Subrahmanyan L, Eberle MA, Clark AG, Kruglyak L, Nickerson DA

Sequence variation and linkage disequilibrium in the human T-cell receptor beta (TCRB) locus

AMERICAN JOURNAL OF HUMAN GENETICS. 2001 AUG; 69 (2): 381-395

309

232 Black AR, Black JD, Azizkhan-Clifford J

Sp1 and kruppel-like factor family of transcription factors in cell growth regulation and cancer

JOURNAL OF CELLULAR PHYSIOLOGY. 2001 AUG; 188 (2): 143-160

418

267

310

288 Beaudoing E, Gautheret D

Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data

GENOME RESEARCH. 2001 SEP; 11 (9): 1520-1526

Date / Author / Journal

LCS

GCS

LCR

311

351 Roberts MA, Mutch DM, German JB

Genomics: food and nutrition

CURRENT OPINION IN BIOTECHNOLOGY. 2001 OCT; 12 (5): 516-522

312

385 Choudhary JS, Blackstock WP, Creasy DM, Cottrell JS

Matching peptide mass spectra to EST and genomic DNA databases

TRENDS IN BIOTECHNOLOGY. 2001 OCT; 19 (10): S17-S22

313

411 Goldstrohm AC, Greenleaf AL, Garcia-Blanco MA

Co-transcriptional splicing of pre-messenger RNAs: considerations for the mechanism of alternative splicing

GENE. 2001 OCT 17; 277 (1-2): 31-47

137

314

434 Li FG, Stormo GD

Selection of optimal DNA oligos for gene expression arrays

BIOINFORMATICS. 2001 NOV; 17 (11): 1067-1076

117

315

489 Saha S, Bardelli A, Buckhaults P, Velculescu VE, Rago C, et al.

A phosphatase associated with metastasis of colorectal cancer

SCIENCE. 2001 NOV 9; 294 (5545): 1343-1346

238

316

491 McKusick VA

The anatomy of the human genome - A neo-Vesalian basis for medicine in the 21st century

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION. 2001 NOV 14; 286 (18): 2289-2295

317

550 Hodgson G, Hager JH, Volik S, Hariono S, Wernick M, et al.

Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas

NATURE GENETICS. 2001 DEC; 29 (4): 459-464

172

318

565 Reiss T

Drug discovery of the future: the implications of the human genome project

TRENDS IN BIOTECHNOLOGY. 2001 DEC; 19 (12): 496-499

319

614 Birney E, Clamp M, Hubbard T

Databases and tools for browsing genomes

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2002; 3: 293-310

320

741 Bourque G, Pevzner PA

Genome-scale evolution: Reconstructing gene orders in the ancestral species

GENOME RESEARCH. 2002 JAN; 12 (1): 26-36

154

Date / Author / Journal

LCS

GCS

LCR

321

742 Nekrutenko A, Makova KD, Li WH

The K-A/K-S ratio test for assessing the protein-coding potential of genomic regions: An empirical and simulation study

GENOME RESEARCH. 2002 JAN; 12 (1): 198-202

322

796 Ferrer-Costa C, Orozco M, de la Cruz X

Characterization of disease-associated single amino acid polymorphisms in terms of sequence and structure properties

JOURNAL OF MOLECULAR BIOLOGY. 2002 JAN 25; 315 (4): 771-786

323

885 Pavlicek A, Paces J, Elleder D, Hejnar J

Processed Pseudogenes of human endogenous retroviruses generated by LINEs: Their integration, stability, and distribution

GENOME RESEARCH. 2002 MAR; 12 (3): 391-399

324

886 Semple CAM, Morris SW, Porteous DJ, Evans KL

Computational comparison of human genomic sequence assemblies for a region of chromosome 4

GENOME RESEARCH. 2002 MAR; 12 (3): 424-429

325

932 Lopez MF, Melov S

Applied proteomics - Mitochondrial proteins and effect on function

CIRCULATION RESEARCH. 2002 MAR 8; 90 (4): 380-389

127

326

1039 Yu N, Chen FC, Ota S, Jorde LB, Pamilo P, et al.

Larger genetic differences within Africans than between Africans and Eurasians

GENETICS. 2002 MAY; 161 (1): 269-274

327

1057 Betran E, Wang W, Jin L, Long MY

Evolution of the Phosphoglycerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene

MOLECULAR BIOLOGY AND EVOLUTION. 2002 MAY; 19 (5): 654-663

328

1224 Schmidt A, Hall A

Guanine nucleotide exchange factors for Rho GTPases: turning on the switch

GENES & DEVELOPMENT. 2002 JUL 1; 16 (13): 1587-1609

485

194

329

1243 Srinivas PR, Verma M, Zhao YM, Srivastava S

Proteomics for cancer biomarker discovery

CLINICAL CHEMISTRY. 2002 AUG; 48 (8): 1160-1169

330

1256 Thomas JW, Prasad AB, Summers TJ, Lee-Lin SQ, Maduro VVB, et al.

Parallel construction of orthologous sequence-ready clone contig maps in multiple species

GENOME RESEARCH. 2002 AUG; 12 (8): 1277-1285

Date / Author / Journal

LCS

GCS

LCR

331

1287 Little J, Bradley L, Bray MS, Clyne M, Dorman J, et al.

Reporting, appraising, and integrating data on genotype prevalence and gene-disease associations

AMERICAN JOURNAL OF EPIDEMIOLOGY. 2002 AUG 15; 156 (4): 300-310

161

101

332

1384 Rink A, Santschi EM, Eyer KM, Roelofs B, Hess M, et al.

A first-generation EST RH comparative map of the porcine and human genome

MAMMALIAN GENOME. 2002 OCT; 13 (10): 578-587

333

1394 Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, et al.

Bridging structural biology and genomics: assessing protein interaction data with known complexes

TRENDS IN GENETICS. 2002 OCT; 18 (10): 529-536

115

334

1442 Tost J, Gut VG

Genotyping single nucleotide polymorphisms by mass spectrometry

MASS SPECTROMETRY REVIEWS. 2002 NOV-DEC; 21 (6): 388-418

200

335

1720 Cutler P

Protein arrays: The current state-of-the-art

PROTEOMICS. 2003 JAN; 3 (1): 3-18

109

160

336

1785 Sorek R, Safer HM

A novel algorithm for computational identification of contaminated EST libraries

NUCLEIC ACIDS RESEARCH. 2003 FEB 1; 31 (3): 1067-1074

337

1831 Chen C, Grzegorzewski KJ, Barash S, Zhao QH, Schneider H, et al.

An integrated functional genomics screening program reveals a role for BMP-9 in glucose homeostasis

NATURE BIOTECHNOLOGY. 2003 MAR; 21 (3): 294-301

338

1847 Paulding CA, Ruvolo M, Haber DA

The Tre2 (USP6) oncogene is a hominoid-specific gene

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 MAR 4; 100 (5): 2507-2511

339

1982 Wu YM, Yu L, Bi G, Luo KT, Zhou GJ, et al.

Identification and characterization of two novel human SCAN domain-containing zinc finger genes ZNF396 and ZNF397

GENE. 2003 MAY 22; 310: 193-201

340

1986 Kryukov GV, Castellano S, Novoselov SV, Lobanov AV, Zehtab O, et al.

Characterization of mammalian selenoproteomes

SCIENCE. 2003 MAY 30; 300 (5624): 1439-1443

413

Date / Author / Journal

LCS

GCS

LCR

341

2022 Valenzuela DM, Murphy AJ, Frendewey D, Gale NW, Economides AN, et al.

High-throughput engineering of the mouse genome coupled with high-resolution expression analysis

NATURE BIOTECHNOLOGY. 2003 JUN; 21 (6): 652-659

124

342

2090 Bader GD, Heilbut A, Andrews B, Tyers M, Hughes T, et al.

Functional genomics and proteomics: charting a multidimensional map of the yeast cell

TRENDS IN CELL BIOLOGY. 2003 JUL; 13 (7): 344-356

138

343

2106 Zhao ZM, Fu YX, Hewett-Emmett D, Boerwinkle E

Investigating single nucleotide polymorphism (SNP) density in the human genome and its implications for molecular evolution

GENE. 2003 JUL 17; 312: 207-213

344

2140 Vienne A, Rasmussen J, Abi-Rached L, Pontarotti P, Gilles A

Systematic phylogenomic evidence of en bloc duplication of the ancestral 8p11.21-8p21.3-like region

MOLECULAR BIOLOGY AND EVOLUTION. 2003 AUG; 20 (8): 1290-1298

345

2159 Mattick JS

The human genome and the future of medicine

MEDICAL JOURNAL OF AUSTRALIA. 2003 AUG 18; 179 (4): 212-216

346

2209 Hoogendoorn B, Coleman SL, Guy CA, Smith K, Bowen T, et al.

Functional analysis of human promoter polymorphisms

HUMAN MOLECULAR GENETICS. 2003 SEP 15; 12 (18): 2249-2254

347

2281 Bonizzoni P, Della Vedova G, Dondi R, Li J

The haplotyping problem: An overview of computational models and solutions

JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY. 2003 NOV; 18 (6): 675-688

348

2412 Huang H, Winter EE, Wang HJ, Weinstock KG, Xing HM, et al.

Evolutionary conservation and selection of human disease gene orthologs in the rat and mouse genomes

GENOME BIOLOGY. 2004; 5 (7): Art. No. R47

349

2512 Kreahling J, Graveley BR

The origins and implications of Aluternative splicing

TRENDS IN GENETICS. 2004 JAN; 20 (1): 1-4

350

2655 Bredel M, Jacoby E

Chemogenomics: An emerging strategy for rapid target and drug discovery

NATURE REVIEWS GENETICS. 2004 APR; 5 (4): 262-275

144

Date / Author / Journal

LCS

GCS

LCR

351

2695 Dermitzakis ET, Kirkness E, Schwarz S, Birney E, Reymond A, et al.

Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment

GENOME RESEARCH. 2004 MAY; 14 (5): 852-859

352

2713 Garcia-Blanco MA, Baraniak AP, Lasda EL

Alternative splicing in disease and therapy

NATURE BIOTECHNOLOGY. 2004 MAY; 22 (5): 535-546

180

187

353

2731 Parker HG, Kim LV, Sutter NB, Carlson S, Lorentzen TD, et al.

Genetic structure of the purebred domestic dog

SCIENCE. 2004 MAY 21; 304 (5674): 1160-1164

159

354

2734 Bentley DR

Genomes for medicine

NATURE. 2004 MAY 27; 429 (6990): 440-445

355

2804 Greenberg HJ, Hart WE, Lancia G

Opportunities for combinatorial optimization in computational biology

INFORMS JOURNAL ON COMPUTING. 2004 SUM; 16 (3): 211-231

356

2808 Yano Y, Saito R, Yoshida N, Yoshiki A, Wynshaw-Boris A, et al.

A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene

JOURNAL OF MOLECULAR MEDICINE-JMM. 2004 JUL; 82 (7): 414-422

357

2897 Weinshilboum R, Wang LW

Pharmacogenomics: Bench to bedside

NATURE REVIEWS DRUG DISCOVERY. 2004 SEP; 3 (9): 739-748

358

2985 Lin S, Chakravarti A, Cutler DJ

Exhaustive allelic transmission disequilibrium tests as a new approach to genome-wide association studies

NATURE GENETICS. 2004 NOV; 36 (11): 1181-1188

359

2986 Kramer R, Cohen D

Functional genomics to new drug targets

NATURE REVIEWS DRUG DISCOVERY. 2004 NOV; 3 (11): 965-972

360

3020 Blancafort P, Segal DJ, Barbas CF

Designing transcription factor architectures for drug discovery

MOLECULAR PHARMACOLOGY. 2004 DEC; 66 (6): 1361-1371

Date / Author / Journal

LCS

GCS

LCR

361

3206 Chiesl TN, Shi W, Barron AE

Poly(acrylamide-co-alkylacrylamides) for electrophoretic DNA purification in microchannels

ANALYTICAL CHEMISTRY. 2005 FEB 1; 77 (3): 772-779

362

3308 Schioth HB, Fredriksson R

The GRAFS classification system of G-protein coupled receptors in comparative perspective

GENERAL AND COMPARATIVE ENDOCRINOLOGY. 2005 MAY 15; 142 (1-2): 94-101

363

3320 Lejeune F, Maquat LE

Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells

CURRENT OPINION IN CELL BIOLOGY. 2005 JUN; 17 (3): 309-315

146

364

3329 Dew IM, Walenz B, Sutton G

A tool for analyzing mate pairs in assemblies (TAMPA)

JOURNAL OF COMPUTATIONAL BIOLOGY. 2005 JUN; 12 (5): 497-513

365

3430 Barr SD, Leipzig J, Shinn P, Ecker JR, Bushman FD

Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome

JOURNAL OF VIROLOGY. 2005 SEP; 79 (18): 12035-12044

366

3431 Yates JR, Gilchrist A, Howell KE, Bergeron JJM

Proteomics of organelles and large cellular structures

NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2005 SEP; 6 (9): 702-714

134

107

367

3624 Thingholm TE, Jorgensen TJD, Jensen ON, Larsen MR

Highly selective enrichment of phosphorylated peptides using titanium dioxide

NATURE PROTOCOLS. 2006; 1 (4): 1929-1935

368

3682 Saxonov S, Berg P, Brutlag DL

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JAN 31; 103 (5): 1412-1417

369

3698 Ciuffi A, Mitchell RS, Hoffmann C, Leipzig J, Shinn P, et al.

Integration site selection by and growth-arrested HIV-Based vectors in dividing IMR-90 lung fibroblasts

MOLECULAR THERAPY. 2006 FEB; 13 (2): 366-373

370

3802 Huntley S, Baggott DM, Hamilton AT, Tran-Gyamfi M, Yang S, et al.

A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors

GENOME RESEARCH. 2006 MAY; 16 (5): 669-677

Date / Author / Journal

LCS

GCS

LCR

371

3870 Sabeti PC, Schaffner SF, Fry B, Lohmueller J, Varilly P, et al.

Positive natural selection in the human lineage

SCIENCE. 2006 JUN 16; 312 (5780): 1614-1620

177

372

4249 Sundquist A, Ronaghi M, Tang HX, Pevzner P, Batzoglou S

Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies

PLOS ONE. 2007 MAY 30; 2 (5): Art. No. e484

373

4359 Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, et al.

The diploid genome sequence of an individual human

PLOS BIOLOGY. 2007 OCT; 5 (10): 2113-2144

106

374

13 Mackay TFC

The genetic architecture of quantitative traits

ANNUAL REVIEW OF GENETICS. 2001; 35: 303-339

333

251

375

57 Macri J, Rapundalo ST

Application of proteomics to the study of cardiovascular biology

TRENDS IN CARDIOVASCULAR MEDICINE. 2001 FEB; 11 (2): 66-75

376

60 Olson MV

The maps - Clone by clone by clone

NATURE. 2001 FEB 15; 409 (6822): 816-818

377

130 Shevchenko A, Sunyaev S, Loboda A, Shevehenko A, Bork P, et al.

Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time of flight mass spectrometry and BLAST homology searching

ANALYTICAL CHEMISTRY. 2001 MAY 1; 73 (9): 1917-1926

274

378

131 Schwartz RS

Racial profiling in medical research.

NEW ENGLAND JOURNAL OF MEDICINE. 2001 MAY 3; 344 (18): 1392-1393

188

379

143 Sreekumar KR, Aravind L, Koonin EV

Computational analysis of human disease-associated genes and their protein products

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2001 JUN; 11 (3): 247-257

100

380

144 Kole R, Sazani P

Antisense effects in the cell nucleus: Modification of splicing

CURRENT OPINION IN MOLECULAR THERAPEUTICS. 2001 JUN; 3 (3): 229-234

Date / Author / Journal

LCS

GCS

LCR

381

201 Maggio ET, Ramnarayan K

Recent developments in computational proteomics

TRENDS IN BIOTECHNOLOGY. 2001 JUL; 19 (7): 266-272

382

243 Huang S

Genomics, complexity and drug discovery: insights from Boolean network models of cellular regulation

PHARMACOGENOMICS. 2001 AUG; 2 (3): 203-222

383

265 Fruhwald MC, O'Dorisio MS, Dai ZY, Tanner SM, Balster DA, et al.

Aberrant promoter methylation of previously unidentified target genes is a common abnormality in medulloblastomas - Implications for tumor biology and potential clinical utility

ONCOGENE. 2001 AUG 16; 20 (36): 5033-5042

384

325 Lee DK, Nguyen T, Lynch KR, Cheng R, Vanti WB, et al.

Discovery and mapping of ten novel G protein-coupled receptor genes

GENE. 2001 SEP 5; 275 (1): 83-91

385

379 Brenner SE

A tour of structural genomics

NATURE REVIEWS GENETICS. 2001 OCT; 2 (10): 801-809

125

386

384 Liu JF, Rost B

Comparing function and structure between entire proteomes

PROTEIN SCIENCE. 2001 OCT; 10 (10): 1970-1979

102

387

393 Bajorath J

Rational drug discovery revisited: interfacing experimental programs with bio-and chemo-informatics

DRUG DISCOVERY TODAY. 2001 OCT 1; 6 (19): 989-995

388

441 Mitnik L, Novotny M, Felten C, Buonocore S, Koutny L, et al.

Recent advances in DNA sequencing by capillary and microdevice electrophoresis

ELECTROPHORESIS. 2001 NOV; 22 (19): 4104-4117

106

389

449 Chen R, Bouck JB, Weinstock GM, Gibbs RA

Comparing vertebrate whole-genome shotgun reads to the human genome

GENOME RESEARCH. 2001 NOV; 11 (11): 1807-1816

390

499 Bang ML, Centner T, Fornoff F, Geach AJ, Gotthardt M, et al.

The complete gene sequence of titin, expression of an unusual approximate to 700-kDa titin isoform, and its interaction with obscurin identify a novel Z-line to I-band linking system

CIRCULATION RESEARCH. 2001 NOV 23; 89 (11): 1065-1072

175

Date / Author / Journal

391

Genomics - Genetic association by whole-genome analysis?

SCIENCE. 2001 NOV 23; 294 (5547): 1669-1670

392

515 Yu J, Hu SN, Wang J, Li SG, Wong KSG, et al.

A draft sequence of the rice (Oryza sativa ssp indica) genome

CHINESE SCIENCE BULLETIN. 2001 DEC; 46 (23): 1937-1942

393

525 Sankoff D

Gene and genome duplication

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2001 DEC; 11 (6): 681-684

394

674 Matyas G, Giunta C, Steinmann B, Hossle JP, Hellwig R

Quantification of single nucleotide polymorphisms: A novel method that combines primer extension assay and capillary electrophoresis

HUMAN MUTATION. 2002; 19 (1): 58-68

395

838 Hoving S, Gerrits B, Voshol H, Muller D, Roberts RC, et al.

Preparative two-dimensional gel electrophoresis at alkaline pH using narrow range immobilized pH gradients

PROTEOMICS. 2002 FEB; 2 (2): 127-134

396

864 Stone JR, Maki JL, Blacklow SC, Collins T

The SCAN domain of ZNF174 is a dimer

JOURNAL OF BIOLOGICAL CHEMISTRY. 2002 FEB 15; 277 (7): 5448-5452

397

866 Maniatis N, Collins A, Xu CF, McCarthy LC, Hewett DR, et al.

The first linkage disequilibrium (LD) maps: Delineation of hot and cold blocks by diplotype analysis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 FEB 19; 99 (4): 2228-2233

102

398

907 Yaffe MB

Phosphotyrosine-binding domains in signal transduction

NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2002 MAR; 3 (3): 177-186

111

148

399

964 Rowen L, Young J, Birditt B, Kaur A, Madan A, et al.

Analysis of the human neurexin genes: Alternative splicing and the generation of protein diversity

GENOMICS. 2002 APR; 79 (4): 587-597

400

1019 Bayat A

Science, medicine, and the future - Bioinformatics

BRITISH MEDICAL JOURNAL. 2002 APR 27; 324 (7344): 1018-1022

The sequence of the human genome (Venter) The papers citing Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al. "The sequence of the human genome." SCIENCE. 2001 FEB 16; 291 (5507): 1304	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 18020, GCS 180410, CR 319862 Collection span: 2000 - 2010
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