HistCite - The sequence of the human genome (Venter)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
201	4350 Reymond A, Henrichsen CN, Harewood L, Merla G Side effects of genome structural changes CURRENT OPINION IN GENETICS & DEVELOPMENT. 2007 OCT; 17 (5): 381-386	0	13	10	77
202	4461 Haas BJ Analysis of Alternative Splicing in Plants with Bioinformatics Tools NUCLEAR PRE-MRNA PROCESSING IN PLANTS. 2008; 326: 17-37	0	3	10	69
203	4488 Nickel GC, Tefft D, Adams MD Human PAML browser: a database of positive selection on human genes using phylogenetic methods NUCLEIC ACIDS RESEARCH. 2008 JAN; 36: D800-D808	0	7	10	44
204	4576 Chiba H, Yamashita R, Kinoshita K, Nakai K Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs BMC GENOMICS. 2008 APR 2; 9: Art. No. 152	0	1	10	52
205	4809 Morozova O, Hirst M, Marra MA Applications of New Sequencing Technologies for Transcriptome Analysis ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2009; 10: 135-151	0	0	10	103
206	4822 Harrow J, Nagy A, Reymond A, Alioto T, Patthy L, et al. Identifying protein-coding genes in genomic sequences GENOME BIOLOGY. 2009; 10 (1): Art. No. 201	0	1	10	60
207	4853 Staquicini FI, Pasqualini R, Arap W Ligand-directed profiling: applications to target drug discovery in cancer EXPERT OPINION ON DRUG DISCOVERY. 2009 JAN; 4 (1): 51-59	0	0	10	90
208	4990 Blaskovich MAT Drug Discovery and Protein Tyrosine Phosphatases CURRENT MEDICINAL CHEMISTRY. 2009 JUN; 16 (17): 2095-2176	0	0	10	836
209	5075 Khachane AN, Harrison PM Assessing the genomic evidence for conserved transcribed pseudogenes under selection BMC GENOMICS. 2009 SEP 15; 10: Art. No. 435	0	1	10	46
210	5093 Imelfort M, Edwards D De novo sequencing of plant genomes using second-generation technologies BRIEFINGS IN BIOINFORMATICS. 2009 NOV; 10 (6): 609-618	0	0	10	52
#	Date / Author / Journal	LCS	GCS	LCR	CR
211	811 Copley RR, Letunic I, Bork P Genome and protein evolution in eukaryotes CURRENT OPINION IN CHEMICAL BIOLOGY. 2002 FEB; 6 (1): 39-45	0	8	9	65
212	1108 [Anon] Upstream - news in genomics COMPARATIVE AND FUNCTIONAL GENOMICS. 2002 JUN; 3 (3): 221-225	0	0	9	23
213	1156 Duckworth DM, Sanseau P In silico identification of novel therapeutic targets DRUG DISCOVERY TODAY. 2002 JUN 1; 7 (11): S64-S69	2	6	9	61
214	1220 George AJT Is the number of genes we possess limited by the presence of an adaptive immune system? TRENDS IN IMMUNOLOGY. 2002 JUL; 23 (7): 351-355	0	4	9	42
215	1591 Rogers J The finished genome sequence of Homo sapiens COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY. 2003; 68: 1-11	1	4	9	74
216	1635 Durand D, Sankoff D Tests for gene clustering JOURNAL OF COMPUTATIONAL BIOLOGY. 2003; 10 (3-4): 453-482	8	34	9	81
217	1783 Barrett JC, Kawasaki ES Microarrays: the use of oligonucleotides and cDNA for the analysis of gene expression DRUG DISCOVERY TODAY. 2003 FEB 1; 8 (3): 134-141	8	58	9	76
218	1945 Sverdlov ED DNA in a cell: From a molecular icon to the problem of "what is life?" HERALD OF THE RUSSIAN ACADEMY OF SCIENCES. 2003 MAY-JUN; 73 (3): 262-269	0	2	9	29
219	1969 Scherer SW, Cheung J, MacDonald JR, Osborne LR, Nakabayashi K, et al. Human chromosome 7: DNA sequence and biology SCIENCE. 2003 MAY 2; 300 (5620): 767-772	18	95	9	31
220	2086 Puente XS, Sanchez LM, Overall CM, Lopez-Otin C Human and mouse proteases: A comparative genomic approach NATURE REVIEWS GENETICS. 2003 JUL; 4 (7): 544-558	12	232	9	143
#	Date / Author / Journal	LCS	GCS	LCR	CR
221	2090 Bader GD, Heilbut A, Andrews B, Tyers M, Hughes T, et al. Functional genomics and proteomics: charting a multidimensional map of the yeast cell TRENDS IN CELL BIOLOGY. 2003 JUL; 13 (7): 344-356	6	60	9	138
222	2121 Gamulin S Impact of molecular medicine on pathophysiology, medical practice, and medical education CROATIAN MEDICAL JOURNAL. 2003 AUG; 44 (4): 374-385	0	5	9	108
223	2180 Engler FW, Hatfield J, Nelson W, Soderlund CA Locating sequence on FPC maps and selecting a minimal tiling path GENOME RESEARCH. 2003 SEP; 13 (9): 2152-2163	1	18	9	45
224	2201 Li SY, Cutler G, Liu JJJ, Hoey T, Chen LB, et al. A comparative analysis of HGSC and Celera human genome assemblies and gene sets BIOINFORMATICS. 2003 SEP 1; 19 (13): 1597-1605	1	4	9	20
225	2245 Chanock S Genetic variation and hematology: Single-nucleotide polymorphisms, haplotypes, and complex disease SEMINARS IN HEMATOLOGY. 2003 OCT; 40 (4): 321-328	0	4	9	77
226	2439 Bearer EL Behavior as influence and result of the genetic program: Non-kin rejection, ethnic conflict, and issues in global health care NATURE AND NURTURE. 2004; : 171-199	0	1	9	82
227	2458 Ko MSH Embryogenomics of pre-implantation mammalian development: current status REPRODUCTION FERTILITY AND DEVELOPMENT. 2004; 16 (1-2): 79-85	0	13	9	58
228	2478 Andersen JN, Jansen PG, Echwald SM, Mortensen OH, Fukada T, et al. A genomic perspective on protein tyrosine phosphatases: gene structure, pseudogenes, and genetic disease linkage FASEB JOURNAL. 2004 JAN; 18 (1): 8-30	3	129	9	107
229	2531 Emerson JJ, Kaessmann H, Betran E, Long MY Extensive gene traffic on the mammalian X chromosome SCIENCE. 2004 JAN 23; 303 (5657): 537-540	7	128	9	35
230	2578 Cawley S, Bekiranov S, Ng HH, Kapranov P, Sekinger EA, et al. Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs CELL. 2004 FEB 20; 116 (4): 499-509	36	545	9	49
#	Date / Author / Journal	LCS	GCS	LCR	CR
231	2708 Tefferi A, Spelsberg TC Primer on medical genomics - The end of the beginning MAYO CLINIC PROCEEDINGS. 2004 MAY; 79 (5): 659-660	0	1	9	18
232	2735 Strausberg RL, Simpson AJG, Old LJ, Riggins GJ Oncogenomics and the development of new cancer therapies NATURE. 2004 MAY 27; 429 (6990): 469-474	3	25	9	97
233	2874 Reis EM, Nakaya HI, Louro R, Canavez FC, Flatschart AVF, et al. Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer ONCOGENE. 2004 AUG 26; 23 (39): 6684-6692	3	46	9	37
234	2886 Li WT, Holste D Spectral analysis of guanine and cytosine fluctuations of mouse genomic DNA FLUCTUATION AND NOISE LETTERS. 2004 SEP; 4 (3): L453-L464	0	4	9	75
235	3084 Bosch L, Iarriccio L, Garriga P New prospects for drug discovery from structural studies of rhodopsin CURRENT PHARMACEUTICAL DESIGN. 2005; 11 (17): 2243-2256	0	6	9	144
236	3158 Florea L, Di Francesco V, Miller J, Turner R, Yao A, et al. Gene and alternative splicing annotation with AIR GENOME RESEARCH. 2005 JAN; 15 (1): 54-66	4	25	9	50
237	3166 Andersen JN, Del Vecchio RL, Kannan N, Gergel J, Neuwald AF, et al. Computational analysis of protein tyrosine phosphatases: practical guide to bioinformatics and data resources METHODS. 2005 JAN; 35 (1): 90-114	1	8	9	97
238	3191 Kislinger T, Emili A Multidimensional protein identification technology: current status and future prospects EXPERT REVIEW OF PROTEOMICS. 2005 FEB; 2 (1): 27-39	0	16	9	83
239	3224 Hayes KR, Bradfield RA Advances in toxicogenomics CHEMICAL RESEARCH IN TOXICOLOGY. 2005 MAR; 18 (3): 403-414	0	18	9	79
240	3278 Gloriam DEI, Schioth HB, Fredriksson R Nine new human Rhodopsin family G-protein coupled receptors: Identification, sequence characterisation and evolutionary relationship BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS. 2005 APR 15; 1722 (3): 235-246	4	12	9	36
#	Date / Author / Journal	LCS	GCS	LCR	CR
241	3314 Eyras E, Reymond A, Castelo R, Bye JM, Camara F, et al. Gene finding in the chicken genome BMC BIOINFORMATICS. 2005 MAY 30; 6: Art. No. 131	4	17	9	33
242	3329 Dew IM, Walenz B, Sutton G A tool for analyzing mate pairs in assemblies (TAMPA) JOURNAL OF COMPUTATIONAL BIOLOGY. 2005 JUN; 12 (5): 497-513	6	9	9	19
243	3349 Newton-Cheh C, Hirschhorn JN Genetic association studies of complex traits: design and analysis issues MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 2005 JUN 3; 573 (1-2): 54-69	3	116	9	84
244	3391 Barbazuk WB, Bedell JA, Rabinowicz PD Reduced representation sequencing: a success in maize and a promise for other plant genomes BIOESSAYS. 2005 AUG; 27 (8): 839-848	4	13	9	77
245	3413 Kryukov GV, Schmidt S, Sunyaev S Small fitness effect of mutations in highly conserved non-coding regions HUMAN MOLECULAR GENETICS. 2005 AUG 1; 14 (15): 2221-2229	3	30	9	41
246	3451 Szymanski M, Barciszewska MZ, Erdmann VA, Barciszewski J A new frontier for molecular medicine: Noncoding RNAs BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER. 2005 SEP 25; 1756 (1): 65-75	0	24	9	95
247	3507 Parker HG, Ostrander EA Canine genomics and genetics: Running with the pack PLOS GENETICS. 2005 NOV; 1 (5): Art. No. e58	0	24	9	68
248	3550 Ferrer-Costa C, Orozco M, de la Cruz X Use of bioinformatics tools for the annotation of disease-associated mutations in animal models PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 2005 DEC 1; 61 (4): 878-887	0	7	9	57
249	3603 Forrest ARR, Taylor DF, Crowe ML, Chalk AM, Waddell NJ, et al. Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases GENOME BIOLOGY. 2006; 7 (1): Art. No. R5	2	20	9	87
250	3674 Noda AO, Ikeo K, Gojobori T Comparative genome analyses of nervous system-specific genes GENE. 2006 JAN 3; 365: 130-136	0	2	9	42
#	Date / Author / Journal	LCS	GCS	LCR	CR
251	3718 Florea L Bioinformatics of alternative splicing and its regulation BRIEFINGS IN BIOINFORMATICS. 2006 MAR; 7 (1): 55-69	1	7	9	87
252	3750 Yue P, Moult J Identification and analysis of deleterious human SNPs JOURNAL OF MOLECULAR BIOLOGY. 2006 MAR 10; 356 (5): 1263-1274	1	41	9	38
253	3764 Pe'er I, Chretien YR, de Bakker PIW, Barrett JC, Daly MJ, et al. Biases and reconciliation in estimates of linkage disequilibrium in the human genome AMERICAN JOURNAL OF HUMAN GENETICS. 2006 APR; 78 (4): 588-603	0	21	9	43
254	3781 Chern TM, van Nimwegen E, Kai C, Kawai J, Carninci P, et al. A simple physical model predicts small exon length variations PLOS GENETICS. 2006 APR; 2 (4): Art. No. e45	0	27	9	30
255	3836 Lee S, Kasif S The complete genome sequence of a dog: a perspective BIOESSAYS. 2006 JUN; 28 (6): 569-573	0	2	9	36
256	3839 Pedroso S, Guillen IA Microarray and nanotechnology applications of functional nanoparticles COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING. 2006 JUN; 9 (5): 389-397	0	2	9	79
257	3843 Sawcer S A new era in the genetic analysis of multiple sclerosis CURRENT OPINION IN NEUROLOGY. 2006 JUN; 19 (3): 237-241	0	11	9	80
258	3848 Warren RL, Varabei D, Platt D, Huang X, Messina D, et al. Physical map-assisted whole-genome shotgun sequence assemblies GENOME RESEARCH. 2006 JUN; 16 (6): 768-775	1	10	9	35
259	3892 Lu M, Shi BC, Li XL, Lu JH, Chen RS, et al. A strategy for ordered sequencing based on single molecule nanomanipulation PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS. 2006 JUL; 33 (7): 660-664	0	2	9	29
260	3909 Pan YL Advances in the discovery of cis-regulatory elements CURRENT BIOINFORMATICS. 2006 AUG; 1 (3): 321-336	0	4	9	209
#	Date / Author / Journal	LCS	GCS	LCR	CR
261	3928 Kussmann M, Raymond F, Affolter M OMICS-driven biomarker discovery in nutrition and health JOURNAL OF BIOTECHNOLOGY. 2006 AUG 5; 124 (4): 758-787	2	67	9	277
262	3986 Berry C, Hannenhalli S, Leipzig J, Bushman FD Selection of target sites for mobile DNA integration in the human genome PLOS COMPUTATIONAL BIOLOGY. 2006 NOV; 2 (11): Art. No. e157	0	27	9	46
263	3989 Lemmer ER, Friedman SL, Llovet JM Molecular diagnosis of chronic liver disease and hepatocellular carcinoma: The potential of gene expression profiling SEMINARS IN LIVER DISEASE. 2006 NOV; 26 (4): 373-384	0	16	9	97
264	4014 Juran BD, Lazaridis KN Genomics and complex liver disease: Challenges and opportunities HEPATOLOGY. 2006 DEC; 44 (6): 1380-1390	1	11	9	84
265	4097 Wendl MC Random covering of multiple one-dimensional domains with an application to DNA sequencing SIAM JOURNAL ON APPLIED MATHEMATICS. 2007; 68 (3): 890-905	0	1	9	49
266	4152 Visel A, Bristow J, Pennacchio LA Enhancer identification through comparative genomics SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY. 2007 FEB; 18 (1): 140-152	1	12	9	85
267	4158 Roni V, Carpio R, Wissinger B Mapping of transcription start sites of human retina expressed genes BMC GENOMICS. 2007 FEB 7; 8: Art. No. 42	0	2	9	44
268	4236 Lykidis A Comparative genomics and evolution of eukaryotic phospholipid biosynthesis PROGRESS IN LIPID RESEARCH. 2007 MAY-JUL; 46 (3-4): 171-199	0	3	9	169
269	4249 Sundquist A, Ronaghi M, Tang HX, Pevzner P, Batzoglou S Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies PLOS ONE. 2007 MAY 30; 2 (5): Art. No. e484	6	32	9	35
270	4263 Denoeud F, Kapranov P, Ucla C, Frankish A, Castelo R, et al. Prominent use of distal 5 ' transcription start sites and discovery of a large number of additional exons in ENCODE regions GENOME RESEARCH. 2007 JUN; 17 (6): 746-759	8	52	9	35
#	Date / Author / Journal	LCS	GCS	LCR	CR
271	4295 Asthana S, Noble WS, Kryukov G, Grantt CE, Sunyaev S, et al. Widely distributed noncoding purifying selection in the human genome PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 JUL 24; 104 (30): 12410-12415	0	16	9	34
272	4352 Fiston-Lavier AS, Anxolabehere D, Quesneville H A model of segmental duplication formation in Drosophila melanogaster GENOME RESEARCH. 2007 OCT; 17 (10): 1458-1470	0	10	9	61
273	4432 Raudsepp T, Gustafson-Seabury A, Durkin K, Wagner ML, Goh G, et al. A 4,103 marker integrated physical and comparative map of the horse genome CYTOGENETIC AND GENOME RESEARCH. 2008; 122 (1): 28-36	0	5	9	45
274	4439 Han L, Su B, Li WH, Zhao ZM CpG island density and its correlations with genomic features in mammalian genomes GENOME BIOLOGY. 2008; 9 (5): Art. No. R79	1	9	9	46
275	4489 Feramisco JD, Casey RL, Tsao H Recent updates on genetics: Teaching old dogmas new tricks PEDIATRIC DERMATOLOGY. 2008 JAN-FEB; 25 (1): 99-108	0	0	9	99
276	4542 Tan K, Tegner J, Ravasi T Integrated approaches to uncovering transcription regulatory networks in mammalian cells GENOMICS. 2008 MAR; 91 (3): 219-231	0	5	9	132
277	4564 Cobb J, Busst C, Petrou S, Harrap S, Ellis J Searching for functional genetic variants in non-coding DNA CLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY. 2008 APR; 35 (4): 372-375	0	2	9	34
278	4590 Poeschla EM Integrase, LEDGF/p75 and HIV replication CELLULAR AND MOLECULAR LIFE SCIENCES. 2008 MAY; 65 (9): 1403-1424	1	14	9	206
279	4591 Seng KC, Seng CK The success of the genome-wide association approach: a brief story of a long struggle EUROPEAN JOURNAL OF HUMAN GENETICS. 2008 MAY; 16 (5): 554-564	0	14	9	118
280	4593 Dalkilic MM, Costello JC, Clark WT, Radivojac P From protein-disease associations to disease informatics FRONTIERS IN BIOSCIENCE. 2008 MAY; 13: 3391-3407	0	3	9	184
#	Date / Author / Journal	LCS	GCS	LCR	CR
281	4595 Zerbino DR, Birney E Velvet: Algorithms for de novo short read assembly using de Bruijn graphs GENOME RESEARCH. 2008 MAY; 18 (5): 821-829	10	76	9	28
282	4696 Zhang W, Dolan ME Beyond the HapMap Genotypic Data: Prospects of Deep Resequencing Projects CURRENT BIOINFORMATICS. 2008 SEP; 3 (3): 178-182	1	3	9	41
283	4769 North KE, Martin LJ The Importance of Gene-Environment Interaction Implications for Social Scientists SOCIOLOGICAL METHODS & RESEARCH. 2008 NOV; 37 (2): 164-200	0	1	9	154
284	4799 Jung K, Park J, Choi J, Park B, Kim S, et al. SNUGB: a versatile genome browser supporting comparative and functional fungal genomics BMC GENOMICS. 2008 DEC 4; 9: Art. No. 586	0	0	9	101
285	4860 Mustafi D, Palczewski K Topology of Class A G Protein-Coupled Receptors: Insights Gained from Crystal Structures of Rhodopsins, Adrenergic and Adenosine Receptors MOLECULAR PHARMACOLOGY. 2009 JAN; 75 (1): 1-12	0	11	9	74
286	4870 Emerson RO, Thomas JH Adaptive Evolution in Zinc Finger Transcription Factors PLOS GENETICS. 2009 JAN; 5 (1): Art. No. e1000325	0	4	9	62
287	4876 Chang MH, Lindegren ML, Butler MA, Chanock SJ, Dowling NF, et al. Prevalence in the United States of Selected Candidate Gene Variants AMERICAN JOURNAL OF EPIDEMIOLOGY. 2009 JAN 1; 169 (1): 54-66	0	5	9	76
288	4906 Visel A, Blow MJ, Li ZR, Zhang T, Akiyama JA, et al. ChIP-seq accurately predicts tissue-specific activity of enhancers NATURE. 2009 FEB 12; 457 (7231): 854-858	2	27	9	53
289	4975 Raghupathy N, Durand D Gene Cluster Statistics with Gene Families MOLECULAR BIOLOGY AND EVOLUTION. 2009 MAY; 26 (5): 957-968	0	0	9	57
290	4977 Gagna CE, Lambert WC Novel multistranded, alternative, plasmid and helical transitional DNA and RNA microarrays: implications for therapeutics PHARMACOGENOMICS. 2009 MAY; 10 (5): 895-914	0	1	9	62
#	Date / Author / Journal	LCS	GCS	LCR	CR
291	5009 Sato Y, Hashiguchi Y, Nishida M Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication BMC EVOLUTIONARY BIOLOGY. 2009 JUN 5; 9: Art. No. 127	0	0	9	68
292	5025 Appelt JU, Giordano FA, Ecker M, Roeder I, Grund N, et al. QuickMap: a public tool for large-scale gene therapy vector insertion site mapping and analysis GENE THERAPY. 2009 JUL; 16 (7): 885-893	0	0	9	54
293	5064 Salzburger W, Steinke D, Braasch I, Meyer A Genome Desertification in Eutherians: Can Gene Deserts Explain the Uneven Distribution of Genes in Placental Mammalian Genomes? JOURNAL OF MOLECULAR EVOLUTION. 2009 SEP; 69 (3): 207-216	0	0	9	34
294	5095 Zhang W, Dolan ME Use of Cell Lines in the Investigation of Pharmacogenetic Loci CURRENT PHARMACEUTICAL DESIGN. 2009 NOV; 15 (32): 3782-3795	0	0	9	147
295	5107 Wagner MJ Pharmacogenetics and personal genomes PERSONALIZED MEDICINE. 2009 NOV; 6 (6): 643-652	0	1	9	65
296	5109 Knight JC Genetics and the general physician: insights, applications and future challenges QJM-AN INTERNATIONAL JOURNAL OF MEDICINE. 2009 NOV; 102 (11): 757-772	0	0	9	118
297	673 DeWan AT, Parrado AR, Matise TC, Leal SM Map error reduction: Using genetic and sequence-based physical maps to order closely linked markers HUMAN HEREDITY. 2002; 54 (1): 34-44	0	4	8	21
298	1118 Leo CP, Hsu SY, Hsueh AJW Hormonal genomics ENDOCRINE REVIEWS. 2002 JUN; 23 (3): 369-381	1	15	8	159
299	1141 McLysaght A, Hokamp K, Wolfe KH Extensive genomic duplication during early chordate evolution NATURE GENETICS. 2002 JUN; 31 (2): 200-204	34	250	8	31
300	1155 Stahura FL, Bajorath J Bio-and chemo-informatics beyond data management: crucial challenges and future opportunities DRUG DISCOVERY TODAY. 2002 JUN 1; 7 (11): S41-S47	1	9	8	44

Date / Author / Journal

LCS

GCS

LCR

201

4350 Reymond A, Henrichsen CN, Harewood L, Merla G

Side effects of genome structural changes

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2007 OCT; 17 (5): 381-386

202

4461 Haas BJ

Analysis of Alternative Splicing in Plants with Bioinformatics Tools

NUCLEAR PRE-MRNA PROCESSING IN PLANTS. 2008; 326: 17-37

203

4488 Nickel GC, Tefft D, Adams MD

Human PAML browser: a database of positive selection on human genes using phylogenetic methods

NUCLEIC ACIDS RESEARCH. 2008 JAN; 36: D800-D808

204

4576 Chiba H, Yamashita R, Kinoshita K, Nakai K

Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs

BMC GENOMICS. 2008 APR 2; 9: Art. No. 152

205

4809 Morozova O, Hirst M, Marra MA

Applications of New Sequencing Technologies for Transcriptome Analysis

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2009; 10: 135-151

103

206

4822 Harrow J, Nagy A, Reymond A, Alioto T, Patthy L, et al.

Identifying protein-coding genes in genomic sequences

GENOME BIOLOGY. 2009; 10 (1): Art. No. 201

207

4853 Staquicini FI, Pasqualini R, Arap W

Ligand-directed profiling: applications to target drug discovery in cancer

EXPERT OPINION ON DRUG DISCOVERY. 2009 JAN; 4 (1): 51-59

208

4990 Blaskovich MAT

Drug Discovery and Protein Tyrosine Phosphatases

CURRENT MEDICINAL CHEMISTRY. 2009 JUN; 16 (17): 2095-2176

836

209

5075 Khachane AN, Harrison PM

Assessing the genomic evidence for conserved transcribed pseudogenes under selection

BMC GENOMICS. 2009 SEP 15; 10: Art. No. 435

210

5093 Imelfort M, Edwards D

De novo sequencing of plant genomes using second-generation technologies

BRIEFINGS IN BIOINFORMATICS. 2009 NOV; 10 (6): 609-618

Date / Author / Journal

LCS

GCS

LCR

211

811 Copley RR, Letunic I, Bork P

Genome and protein evolution in eukaryotes

CURRENT OPINION IN CHEMICAL BIOLOGY. 2002 FEB; 6 (1): 39-45

212

1108 [Anon]

Upstream - news in genomics

COMPARATIVE AND FUNCTIONAL GENOMICS. 2002 JUN; 3 (3): 221-225

213

1156 Duckworth DM, Sanseau P

In silico identification of novel therapeutic targets

DRUG DISCOVERY TODAY. 2002 JUN 1; 7 (11): S64-S69

214

1220 George AJT

Is the number of genes we possess limited by the presence of an adaptive immune system?

TRENDS IN IMMUNOLOGY. 2002 JUL; 23 (7): 351-355

215

1591 Rogers J

The finished genome sequence of Homo sapiens

COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY. 2003; 68: 1-11

216

1635 Durand D, Sankoff D

Tests for gene clustering

JOURNAL OF COMPUTATIONAL BIOLOGY. 2003; 10 (3-4): 453-482

217

1783 Barrett JC, Kawasaki ES

Microarrays: the use of oligonucleotides and cDNA for the analysis of gene expression

DRUG DISCOVERY TODAY. 2003 FEB 1; 8 (3): 134-141

218

1945 Sverdlov ED

DNA in a cell: From a molecular icon to the problem of "what is life?"

HERALD OF THE RUSSIAN ACADEMY OF SCIENCES. 2003 MAY-JUN; 73 (3): 262-269

219

1969 Scherer SW, Cheung J, MacDonald JR, Osborne LR, Nakabayashi K, et al.

Human chromosome 7: DNA sequence and biology

SCIENCE. 2003 MAY 2; 300 (5620): 767-772

220

2086 Puente XS, Sanchez LM, Overall CM, Lopez-Otin C

Human and mouse proteases: A comparative genomic approach

NATURE REVIEWS GENETICS. 2003 JUL; 4 (7): 544-558

232

143

Date / Author / Journal

LCS

GCS

LCR

221

2090 Bader GD, Heilbut A, Andrews B, Tyers M, Hughes T, et al.

Functional genomics and proteomics: charting a multidimensional map of the yeast cell

TRENDS IN CELL BIOLOGY. 2003 JUL; 13 (7): 344-356

138

222

2121 Gamulin S

Impact of molecular medicine on pathophysiology, medical practice, and medical education

CROATIAN MEDICAL JOURNAL. 2003 AUG; 44 (4): 374-385

108

223

2180 Engler FW, Hatfield J, Nelson W, Soderlund CA

Locating sequence on FPC maps and selecting a minimal tiling path

GENOME RESEARCH. 2003 SEP; 13 (9): 2152-2163

224

2201 Li SY, Cutler G, Liu JJJ, Hoey T, Chen LB, et al.

A comparative analysis of HGSC and Celera human genome assemblies and gene sets

BIOINFORMATICS. 2003 SEP 1; 19 (13): 1597-1605

225

2245 Chanock S

Genetic variation and hematology: Single-nucleotide polymorphisms, haplotypes, and complex disease

SEMINARS IN HEMATOLOGY. 2003 OCT; 40 (4): 321-328

226

2439 Bearer EL

Behavior as influence and result of the genetic program: Non-kin rejection, ethnic conflict, and issues in global health care

NATURE AND NURTURE. 2004; : 171-199

227

2458 Ko MSH

Embryogenomics of pre-implantation mammalian development: current status

REPRODUCTION FERTILITY AND DEVELOPMENT. 2004; 16 (1-2): 79-85

228

2478 Andersen JN, Jansen PG, Echwald SM, Mortensen OH, Fukada T, et al.

A genomic perspective on protein tyrosine phosphatases: gene structure, pseudogenes, and genetic disease linkage

FASEB JOURNAL. 2004 JAN; 18 (1): 8-30

129

107

229

2531 Emerson JJ, Kaessmann H, Betran E, Long MY

Extensive gene traffic on the mammalian X chromosome

SCIENCE. 2004 JAN 23; 303 (5657): 537-540

128

230

2578 Cawley S, Bekiranov S, Ng HH, Kapranov P, Sekinger EA, et al.

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

CELL. 2004 FEB 20; 116 (4): 499-509

545

Date / Author / Journal

LCS

GCS

LCR

231

2708 Tefferi A, Spelsberg TC

Primer on medical genomics - The end of the beginning

MAYO CLINIC PROCEEDINGS. 2004 MAY; 79 (5): 659-660

232

2735 Strausberg RL, Simpson AJG, Old LJ, Riggins GJ

Oncogenomics and the development of new cancer therapies

NATURE. 2004 MAY 27; 429 (6990): 469-474

233

2874 Reis EM, Nakaya HI, Louro R, Canavez FC, Flatschart AVF, et al.

Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer

ONCOGENE. 2004 AUG 26; 23 (39): 6684-6692

234

2886 Li WT, Holste D

Spectral analysis of guanine and cytosine fluctuations of mouse genomic DNA

FLUCTUATION AND NOISE LETTERS. 2004 SEP; 4 (3): L453-L464

235

3084 Bosch L, Iarriccio L, Garriga P

New prospects for drug discovery from structural studies of rhodopsin

CURRENT PHARMACEUTICAL DESIGN. 2005; 11 (17): 2243-2256

144

236

3158 Florea L, Di Francesco V, Miller J, Turner R, Yao A, et al.

Gene and alternative splicing annotation with AIR

GENOME RESEARCH. 2005 JAN; 15 (1): 54-66

237

3166 Andersen JN, Del Vecchio RL, Kannan N, Gergel J, Neuwald AF, et al.

Computational analysis of protein tyrosine phosphatases: practical guide to bioinformatics and data resources

METHODS. 2005 JAN; 35 (1): 90-114

238

3191 Kislinger T, Emili A

Multidimensional protein identification technology: current status and future prospects

EXPERT REVIEW OF PROTEOMICS. 2005 FEB; 2 (1): 27-39

239

3224 Hayes KR, Bradfield RA

Advances in toxicogenomics

CHEMICAL RESEARCH IN TOXICOLOGY. 2005 MAR; 18 (3): 403-414

240

3278 Gloriam DEI, Schioth HB, Fredriksson R

Nine new human Rhodopsin family G-protein coupled receptors: Identification, sequence characterisation and evolutionary relationship

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS. 2005 APR 15; 1722 (3): 235-246

Date / Author / Journal

LCS

GCS

LCR

241

3314 Eyras E, Reymond A, Castelo R, Bye JM, Camara F, et al.

Gene finding in the chicken genome

BMC BIOINFORMATICS. 2005 MAY 30; 6: Art. No. 131

242

3329 Dew IM, Walenz B, Sutton G

A tool for analyzing mate pairs in assemblies (TAMPA)

JOURNAL OF COMPUTATIONAL BIOLOGY. 2005 JUN; 12 (5): 497-513

243

3349 Newton-Cheh C, Hirschhorn JN

Genetic association studies of complex traits: design and analysis issues

MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 2005 JUN 3; 573 (1-2): 54-69

116

244

3391 Barbazuk WB, Bedell JA, Rabinowicz PD

Reduced representation sequencing: a success in maize and a promise for other plant genomes

BIOESSAYS. 2005 AUG; 27 (8): 839-848

245

3413 Kryukov GV, Schmidt S, Sunyaev S

Small fitness effect of mutations in highly conserved non-coding regions

HUMAN MOLECULAR GENETICS. 2005 AUG 1; 14 (15): 2221-2229

246

3451 Szymanski M, Barciszewska MZ, Erdmann VA, Barciszewski J

A new frontier for molecular medicine: Noncoding RNAs

BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER. 2005 SEP 25; 1756 (1): 65-75

247

3507 Parker HG, Ostrander EA

Canine genomics and genetics: Running with the pack

PLOS GENETICS. 2005 NOV; 1 (5): Art. No. e58

248

3550 Ferrer-Costa C, Orozco M, de la Cruz X

Use of bioinformatics tools for the annotation of disease-associated mutations in animal models

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 2005 DEC 1; 61 (4): 878-887

249

3603 Forrest ARR, Taylor DF, Crowe ML, Chalk AM, Waddell NJ, et al.

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases

GENOME BIOLOGY. 2006; 7 (1): Art. No. R5

250

3674 Noda AO, Ikeo K, Gojobori T

Comparative genome analyses of nervous system-specific genes

GENE. 2006 JAN 3; 365: 130-136

Date / Author / Journal

251

Bioinformatics of alternative splicing and its regulation

BRIEFINGS IN BIOINFORMATICS. 2006 MAR; 7 (1): 55-69

252

3750 Yue P, Moult J

Identification and analysis of deleterious human SNPs

JOURNAL OF MOLECULAR BIOLOGY. 2006 MAR 10; 356 (5): 1263-1274

253

3764 Pe'er I, Chretien YR, de Bakker PIW, Barrett JC, Daly MJ, et al.

Biases and reconciliation in estimates of linkage disequilibrium in the human genome

AMERICAN JOURNAL OF HUMAN GENETICS. 2006 APR; 78 (4): 588-603

254

3781 Chern TM, van Nimwegen E, Kai C, Kawai J, Carninci P, et al.

A simple physical model predicts small exon length variations

PLOS GENETICS. 2006 APR; 2 (4): Art. No. e45

255

3836 Lee S, Kasif S

The complete genome sequence of a dog: a perspective

BIOESSAYS. 2006 JUN; 28 (6): 569-573

256

3839 Pedroso S, Guillen IA

Microarray and nanotechnology applications of functional nanoparticles

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING. 2006 JUN; 9 (5): 389-397

257

3843 Sawcer S

A new era in the genetic analysis of multiple sclerosis

CURRENT OPINION IN NEUROLOGY. 2006 JUN; 19 (3): 237-241

258

3848 Warren RL, Varabei D, Platt D, Huang X, Messina D, et al.

Physical map-assisted whole-genome shotgun sequence assemblies

GENOME RESEARCH. 2006 JUN; 16 (6): 768-775

259

3892 Lu M, Shi BC, Li XL, Lu JH, Chen RS, et al.

A strategy for ordered sequencing based on single molecule nanomanipulation

PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS. 2006 JUL; 33 (7): 660-664

260

3909 Pan YL

Advances in the discovery of cis-regulatory elements

CURRENT BIOINFORMATICS. 2006 AUG; 1 (3): 321-336

209

Date / Author / Journal

LCS

GCS

LCR

261

3928 Kussmann M, Raymond F, Affolter M

OMICS-driven biomarker discovery in nutrition and health

JOURNAL OF BIOTECHNOLOGY. 2006 AUG 5; 124 (4): 758-787

277

262

3986 Berry C, Hannenhalli S, Leipzig J, Bushman FD

Selection of target sites for mobile DNA integration in the human genome

PLOS COMPUTATIONAL BIOLOGY. 2006 NOV; 2 (11): Art. No. e157

263

3989 Lemmer ER, Friedman SL, Llovet JM

Molecular diagnosis of chronic liver disease and hepatocellular carcinoma: The potential of gene expression profiling

SEMINARS IN LIVER DISEASE. 2006 NOV; 26 (4): 373-384

264

4014 Juran BD, Lazaridis KN

Genomics and complex liver disease: Challenges and opportunities

HEPATOLOGY. 2006 DEC; 44 (6): 1380-1390

265

4097 Wendl MC

Random covering of multiple one-dimensional domains with an application to DNA sequencing

SIAM JOURNAL ON APPLIED MATHEMATICS. 2007; 68 (3): 890-905

266

4152 Visel A, Bristow J, Pennacchio LA

Enhancer identification through comparative genomics

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY. 2007 FEB; 18 (1): 140-152

267

4158 Roni V, Carpio R, Wissinger B

Mapping of transcription start sites of human retina expressed genes

BMC GENOMICS. 2007 FEB 7; 8: Art. No. 42

268

4236 Lykidis A

Comparative genomics and evolution of eukaryotic phospholipid biosynthesis

PROGRESS IN LIPID RESEARCH. 2007 MAY-JUL; 46 (3-4): 171-199

169

269

4249 Sundquist A, Ronaghi M, Tang HX, Pevzner P, Batzoglou S

Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies

PLOS ONE. 2007 MAY 30; 2 (5): Art. No. e484

270

4263 Denoeud F, Kapranov P, Ucla C, Frankish A, Castelo R, et al.

Prominent use of distal 5 ' transcription start sites and discovery of a large number of additional exons in ENCODE regions

GENOME RESEARCH. 2007 JUN; 17 (6): 746-759

Date / Author / Journal

LCS

GCS

LCR

271

4295 Asthana S, Noble WS, Kryukov G, Grantt CE, Sunyaev S, et al.

Widely distributed noncoding purifying selection in the human genome

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 JUL 24; 104 (30): 12410-12415

272

4352 Fiston-Lavier AS, Anxolabehere D, Quesneville H

A model of segmental duplication formation in Drosophila melanogaster

GENOME RESEARCH. 2007 OCT; 17 (10): 1458-1470

273

4432 Raudsepp T, Gustafson-Seabury A, Durkin K, Wagner ML, Goh G, et al.

A 4,103 marker integrated physical and comparative map of the horse genome

CYTOGENETIC AND GENOME RESEARCH. 2008; 122 (1): 28-36

274

4439 Han L, Su B, Li WH, Zhao ZM

CpG island density and its correlations with genomic features in mammalian genomes

GENOME BIOLOGY. 2008; 9 (5): Art. No. R79

275

4489 Feramisco JD, Casey RL, Tsao H

Recent updates on genetics: Teaching old dogmas new tricks

PEDIATRIC DERMATOLOGY. 2008 JAN-FEB; 25 (1): 99-108

276

4542 Tan K, Tegner J, Ravasi T

Integrated approaches to uncovering transcription regulatory networks in mammalian cells

GENOMICS. 2008 MAR; 91 (3): 219-231

132

277

4564 Cobb J, Busst C, Petrou S, Harrap S, Ellis J

Searching for functional genetic variants in non-coding DNA

CLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY. 2008 APR; 35 (4): 372-375

278

4590 Poeschla EM

Integrase, LEDGF/p75 and HIV replication

CELLULAR AND MOLECULAR LIFE SCIENCES. 2008 MAY; 65 (9): 1403-1424

206

279

4591 Seng KC, Seng CK

The success of the genome-wide association approach: a brief story of a long struggle

EUROPEAN JOURNAL OF HUMAN GENETICS. 2008 MAY; 16 (5): 554-564

118

280

4593 Dalkilic MM, Costello JC, Clark WT, Radivojac P

From protein-disease associations to disease informatics

FRONTIERS IN BIOSCIENCE. 2008 MAY; 13: 3391-3407

184

Date / Author / Journal

LCS

GCS

LCR

281

4595 Zerbino DR, Birney E

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

GENOME RESEARCH. 2008 MAY; 18 (5): 821-829

282

4696 Zhang W, Dolan ME

Beyond the HapMap Genotypic Data: Prospects of Deep Resequencing Projects

CURRENT BIOINFORMATICS. 2008 SEP; 3 (3): 178-182

283

4769 North KE, Martin LJ

The Importance of Gene-Environment Interaction Implications for Social Scientists

SOCIOLOGICAL METHODS & RESEARCH. 2008 NOV; 37 (2): 164-200

154

284

4799 Jung K, Park J, Choi J, Park B, Kim S, et al.

SNUGB: a versatile genome browser supporting comparative and functional fungal genomics

BMC GENOMICS. 2008 DEC 4; 9: Art. No. 586

101

285

4860 Mustafi D, Palczewski K

Topology of Class A G Protein-Coupled Receptors: Insights Gained from Crystal Structures of Rhodopsins, Adrenergic and Adenosine Receptors

MOLECULAR PHARMACOLOGY. 2009 JAN; 75 (1): 1-12

286

4870 Emerson RO, Thomas JH

Adaptive Evolution in Zinc Finger Transcription Factors

PLOS GENETICS. 2009 JAN; 5 (1): Art. No. e1000325

287

4876 Chang MH, Lindegren ML, Butler MA, Chanock SJ, Dowling NF, et al.

Prevalence in the United States of Selected Candidate Gene Variants

AMERICAN JOURNAL OF EPIDEMIOLOGY. 2009 JAN 1; 169 (1): 54-66

288

4906 Visel A, Blow MJ, Li ZR, Zhang T, Akiyama JA, et al.

ChIP-seq accurately predicts tissue-specific activity of enhancers

NATURE. 2009 FEB 12; 457 (7231): 854-858

289

4975 Raghupathy N, Durand D

Gene Cluster Statistics with Gene Families

MOLECULAR BIOLOGY AND EVOLUTION. 2009 MAY; 26 (5): 957-968

290

4977 Gagna CE, Lambert WC

Novel multistranded, alternative, plasmid and helical transitional DNA and RNA microarrays: implications for therapeutics

PHARMACOGENOMICS. 2009 MAY; 10 (5): 895-914

Date / Author / Journal

LCS

GCS

LCR

291

5009 Sato Y, Hashiguchi Y, Nishida M

Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication

BMC EVOLUTIONARY BIOLOGY. 2009 JUN 5; 9: Art. No. 127

292

5025 Appelt JU, Giordano FA, Ecker M, Roeder I, Grund N, et al.

QuickMap: a public tool for large-scale gene therapy vector insertion site mapping and analysis

GENE THERAPY. 2009 JUL; 16 (7): 885-893

293

5064 Salzburger W, Steinke D, Braasch I, Meyer A

Genome Desertification in Eutherians: Can Gene Deserts Explain the Uneven Distribution of Genes in Placental Mammalian Genomes?

JOURNAL OF MOLECULAR EVOLUTION. 2009 SEP; 69 (3): 207-216

294

5095 Zhang W, Dolan ME

Use of Cell Lines in the Investigation of Pharmacogenetic Loci

CURRENT PHARMACEUTICAL DESIGN. 2009 NOV; 15 (32): 3782-3795

147

295

5107 Wagner MJ

Pharmacogenetics and personal genomes

PERSONALIZED MEDICINE. 2009 NOV; 6 (6): 643-652

296

5109 Knight JC

Genetics and the general physician: insights, applications and future challenges

QJM-AN INTERNATIONAL JOURNAL OF MEDICINE. 2009 NOV; 102 (11): 757-772

118

297

673 DeWan AT, Parrado AR, Matise TC, Leal SM

Map error reduction: Using genetic and sequence-based physical maps to order closely linked markers

HUMAN HEREDITY. 2002; 54 (1): 34-44

298

1118 Leo CP, Hsu SY, Hsueh AJW

Hormonal genomics

ENDOCRINE REVIEWS. 2002 JUN; 23 (3): 369-381

159

299

1141 McLysaght A, Hokamp K, Wolfe KH

Extensive genomic duplication during early chordate evolution

NATURE GENETICS. 2002 JUN; 31 (2): 200-204

250

300

1155 Stahura FL, Bajorath J

Bio-and chemo-informatics beyond data management: crucial challenges and future opportunities

DRUG DISCOVERY TODAY. 2002 JUN 1; 7 (11): S41-S47

The sequence of the human genome (Venter) The papers citing Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al. "The sequence of the human genome." SCIENCE. 2001 FEB 16; 291 (5507): 1304	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 18020, GCS 180410, CR 319862 Collection span: 2000 - 2010
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