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Mon Jul 31 15:49:42 2006

Rat Genome Sequencing Project Consortium
Genome sequence of the Brown Norway rat
yields insights into mammalian evolution
NATURE 428 (6982): 493-521 APR 1 2004
and the citing papers
Nodes: 353, Authors: 2563, Journals: 153, Outer References: 13847, Words: 1363
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by journal name.

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#LCRNCRNode / Date / Journal / AuthorLCSGCS
111990 2005 ACTA PHARMACOLOGICA SINICA 26 (8): 959-962
Zhan LS; Guan YF; Su DF; Miao CY
Blood pressure variability and baroreflex sensitivity are not different in spontaneously hypertensive rats and stroke-prone spontaneously hypertensive rats
02
2228285 2006 ACTA PHYSIOLOGICA 186 (4): 301-308
Glaab T; Hecker H; Stephan M; Baelder R; Braun A; et al.
Comparison of non-invasive measures of cholinergic and allergic airway responsiveness in rats
00
31441 2004 ACTA PHYSIOLOGICA SCANDINAVICA 181 (4): 585-592
Cowley AW; Liang M; Roman RJ; Greene AS; Jacob HJ
Consomic rat model systems for physiological genomics
010
41472 2004 ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH 28 (11): 1622-1628
Liang TB; Habegger K; Spence JP; Foroud T; Ellison JA; et al.
Glutathione S-transferase 8-8 expression is lower in alcohol-preferring than in alcohol-nonpreferring rats
02
522291 2005 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 3692: 228-238
Berard S; Bergeron A; Chauve C; Paul C
Perfect sorting by reversals is not always difficult (extended abstract)
00
614792 2005 AMERICAN JOURNAL OF PATHOLOGY 166 (5): 1427-1439
Sebbane F; Gardner D; Long D; Gowen BB; Hinnebusch BJ
Kinetics of disease progression and host response in a rat model of bubonic plague
05
718493 2005 AMERICAN JOURNAL OF PHARMACOGENOMICS 5 (1): 53-62
Penny MA; McHale D
Pharmacogenomics and the drug discovery pipeline - When should it be implemented?
06
8514594 2005 ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS 77 (4): 627-650
Salzano FM
Evolutionary change - patterns and processes
00
914995 2005 ANALYTICAL BIOCHEMISTRY 346 (2): 268-280
Mimaki S; Mori-Furukawa Y; Katsuno H; Kishimoto T
A transcriptional regulatory element screening system reveals a novel E2F1/pRb transcription regulation pathway
00
1016286 2006 ANATOMICAL RECORD PART A-DISCOVERIES IN MOLECULAR CELLULAR AND EVOLUTIONARY BIOLOGY 288A (4): 326-330
Friedland DR
Structure and function in the auditory system: From cochlea to cortex
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
112116287 2006 ANATOMICAL RECORD PART A-DISCOVERIES IN MOLECULAR CELLULAR AND EVOLUTIONARY BIOLOGY 288A (4): 409-423
Nothwang HG; Koehl A; Friauf E
Comparative gene expression analysis reveals a characteristic molecular profile of the superior olivary complex
00
12283288 2006 ANIMAL SCIENCE JOURNAL 77 (1): 1-9
Soares MJ; Alam SMK; Konno T; Ho-Chen JK; Ain R
The prolactin family and pregnancy-dependent adaptations
02
1311933 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 15-56
Miller W; Makova KD; Nekrutenko A; Hardison RC
Comparative genomics
1131
1411734 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 443-477
Borevitz JO; Ecker JR
Plant genomics: The third wave
012
15610296 2005 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 6: 143-164
Stone EA; Cooper GM; Sidow A
Trade-offs in detecting evolutionarily constrained sequence by comparative genomics
03
16511797 2005 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 6: 381-406
Giallourakis C; Henson C; Reich M; Xie XH; Mootha VK
Disease gene discovery through integrative genomics
01
1712398 2005 APMIS 113 (9): 613-620
Niittymaki J; Mattila P; Renkonen R
Cloning and expression of rat fucosyltransferase VII at sites of inflammation
00
18115289 2006 APPLICATIONS OF EVOLUTIONARY COMPUTING, PROCEEDINGS 3907: 196-207
Stojanovic N
An algorithm for the automated verification of DNA supercontig assemblies
00
191185 2004 ARBOR-CIENCIA PENSAMIENTO Y CULTURA 177 (698): 285-310
Martinez JMR
Genome sequencing
00
2033399 2005 AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE 45 (7-8): 1011-1016
Dalrymple BP
Harnessing the bovine genome sequence for the Australian cattle and sheep industries
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
211213290 2006 AUTONOMIC NEUROSCIENCE-BASIC & CLINICAL 125 (1-2): 100-115
Andrews PLR; Horn CC
Signals for nausea and emesis: Implications for models of upper gastrointestinal diseases
00
221486 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 321 (3): 707-715
Boutros PC; Moffat ID; Franc MA; Tijet N; Tuomisto J; et al.
Dioxin-responsive AHRE-II gene battery: identification by phylogenetic footprinting
012
231327 2004 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 324 (2): 562-568
Tripodi G; Florio M; Ferrandi M; Modica R; Zimdahl H; et al.
Effect of Add1 gene transfer on blood pressure in reciprocal congenic strains of Milan rats
12
24140100 2005 BIOCHEMICAL JOURNAL 389: 577-585
Ban N; Sasaki M; Sakai H; Ueda K; Inagaki N
Cloning of ABCA17, a novel rodent sperm-specific ABC (ATP-binding cassette) transporter that regulates intracellular lipid metabolism
02
25154101 2005 BIOCHEMICAL JOURNAL 390: 115-123
Sandy J; Mushtaq A; Holton SJ; Schartau P; Noble MEM; et al.
Investigation of the catalytic triad of arylamine N-acetyltransferases: essential residues required for acetyl transfer to arylamines
01
26119102 2005 BIOCHEMICAL SOCIETY TRANSACTIONS 33: 331-334
Puente XS; Sanchez LM; Gutierrez-Fernandez A; Velasco G; Lopez-Otin C
A genomic view of the complexity of mammalian proteolytic systems
03
27120291 2006 BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION 34 (3): 213-220
Geisinger A; Cossio G; Wettstein R
Molecular cloning and analysis of a DNA repetitive element from the mouse genome
00
28131103 2005 BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 1715 (2): 132-144
Yamazaki J; Okamura K; Ishibashi K; Kitamura K
Characterization of CLCA protein expressed in ductal cells of rat salivary glands
00
29123104 2005 BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION 1728 (1-2): 34-43
Geisinger A; Alsheimer M; Baier A; Benavente R; Wettstein R
The mammalian gene pecanex 1 is differentially expressed during spermatogenesis
00
3011158 2004 BIOESSAYS 26 (8): 833-843
Suzuki M; Hayashizaki Y
Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs
314
#LCRNCRNode / Date / Journal / AuthorLCSGCS
312319 2004 BIOESSAYS 26 (10): 1039-1042
Hancock JM
A bigger mouse? The rat genome unveiled
11
32185105 2005 BIOESSAYS 27 (8): 775-784
Han JS; Boeke JD
LINEA retrotransposons: modulators of quantity and quality of mammalian gene expression?
04
33177106 2005 BIOESSAYS 27 (8): 839-848
Barbazuk WB; Bedell JA; Rabinowicz PD
Reduced representation sequencing: a success in maize and a promise for other plant genomes
01
34284292 2006 BIOESSAYS 28 (5): 495-503
Popova NK
From genes to aggressive behavior: the role of serotonergic system
00
35636293 2006 BIOESSAYS 28 (6): 569-573
Lee S; Kasif S
The complete genome sequence of a dog: a perspective
00
36316107 2005 BIOFUTUR (254): 24-28
Esnault Y; Jaillon O; Aury JM; Weissenbach J; Crollius HR
Tetraodon, fish in the genomic model
01
37131108 2005 BIOINFORMATICS 21: I57-I65
Brejova B; Brown DG; Li M; Vinar T
ExonHunter: a comprehensive approach to gene finding
00
38126109 2005 BIOINFORMATICS 21: I351-I358
Price AL; Jones NC; Pevzner PA
De novo identification of repeat families in large genomes
00
39236110 2005 BIOINFORMATICS 21 (6): 703-710
Zheng XH; Lu F; Wang ZY; Hoover J; Mural R
Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs
03
40122111 2005 BIOINFORMATICS 21 (9): 1789-1796
Stepanova M; Tiazhelova T; Skoblov M; Baranova A
A comparative analysis of relative occurrence of transcription factor binding sites in vertebrate genomes and gene promoter areas
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
41130112 2005 BIOINFORMATICS 21 (17): 3461-3468
Pan XK; Stein L; Brendel V
SynBrowse: a synteny browser for comparative sequence analysis
00
42129113 2005 BIOLOGY OF REPRODUCTION 72 (2): 284-292
Iwamoto Y; Kaneko T; Ichinose J; Mori T; Shibata Y; et al.
Molecular cloning of rat Spetex2 family genes mapped on chromosome 15p16, encoding a 23-kilodalton protein associated with the plasma membranes of haploid spermatids
01
43137114 2005 BIOLOGY OF REPRODUCTION 73 (2): 297-307
Blackshear PJ; Phillips RS; Ghosh S; Ramos SVB; Richfield EK; et al.
Zfp36l3, a rodent X chromosome gene encoding a placenta-specific member of the tristetraprolin family of CCCH tandem zinc finger proteins
02
44159294 2006 BIOMATERIALS 27 (9): 1851-1858
de Boer J; van Blitterswijk C; Lowik C
Bioluminescent imaging: Emerging technology for non-invasive imaging of bone tissue engineering
00
45142115 2005 BMC BIOINFORMATICS 6: Art. No. S6
Fang H; Tong W; Perkins R; Shi L; Hong H; et al.
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling
01
46175116 2005 BMC BIOINFORMATICS 6: Art. No. 53
Blair JE; Shah P; Hedges SB
Evolutionary sequence analysis of complete eukaryote genomes
04
47333117 2005 BMC BIOINFORMATICS 6: Art. No. 131
Eyras E; Reymond A; Castelo R; Bye JM; Camara F; et al.
Gene finding in the chicken genome
02
48137118 2005 BMC BIOINFORMATICS 6: Art. No. 175
Rouchka EC; Khalyfa A; Cooper NGF
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
01
49157119 2005 BMC BIOINFORMATICS 6: Art. No. 278
Rosenberg MS
Multiple sequence alignment accuracy and evolutionary distance estimation
01
50549295 2006 BMC BIOINFORMATICS 7: Art. No. 103
Shih ACC; Lee DT; Lin L; Peng CL; Chen SH; et al.
SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
51349296 2006 BMC BIOINFORMATICS 7: Art. No. 136
Chen FC; Chen CJ; Ho JY; Chuang TJ
Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat
00
52249120 2005 BMC BIOLOGY 3: Art. No. 2
Jorgensen FG; Hobolth A; Hornshoj H; Bendixen C; Fredholm M; et al.
Comparative analysis of protein coding sequences from human, mouse and the domesticated pig
04
5314710 2004 BMC EVOLUTIONARY BIOLOGY 4: Art. No. 17
Pereira SL; Baker AJ
Low number of mitochondrial pseudogenes in the chicken (Gallus gallus) nuclear genome: implications for molecular inference of population history and phylogenetics
011
54142121 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 32
Semple CAM; Maxwell A; Gautier P; Kilanowski FM; Eastwood H; et al.
The complexity of selection at the major primate beta-defensin locus
03
55147122 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 39
McLellan AS; Zimmermann W; Moore T
Conservation of pregnancy-specific glycoprotein (PSG) N domains following independent expansions of the gene families in rodents and primates
02
56549123 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 40
Laukaitis CM; Dlouhy SR; Emes RD; Ponting CP; Karn RC
Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus
00
57231297 2006 BMC GENETICS 7: Art. No. 19
Mashimo T; Voigt B; Tsurumi T; Naoi K; Nakanishi S; et al.
A set of highly informative rat simple sequence length polymorphism (SSLP) markers and genetically defined rat strains
00
5816611 2004 BMC GENOMICS 5: Art. No. 62
Balciunas D; Davidson AE; Sivasubbu S; Hermanson SB; Welle Z; et al.
Enhancer trapping in zebrafish using the Sleeping Beauty transposon
014
59133124 2005 BMC GENOMICS 6: Art. No. 11
Nalbant D; Youn H; Nalbant SI; Sharma S; Cobos E; et al.
FAM20: an evolutionarily conserved family of secreted proteins expressed in hematopoietic cells
00
60322125 2005 BMC GENOMICS 6: Art. No. 70
Wernersson R; Schierup MH; Jorgensen FG; Gorodkin J; Panitz F; et al.
Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing
010
#LCRNCRNode / Date / Journal / AuthorLCSGCS
61357126 2005 BMC GENOMICS 6: Art. No. 139
Otto H; Reche PA; Bazan F; Dittmar K; Haag F; et al.
In silico characterization of the family of PARP-like poly(ADP-ribosyl) transferases (pARTs)
02
62238127 2005 BMC GENOMICS 6: Art. No. 170
Smits BMG; Guryev V; Zeegers D; Wedekind D; Hedrich HJ; et al.
Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates
00
63391298 2006 BMC GENOMICS 7: Art. No. 20
Steinke D; Salzburger W; Braasch I; Meyer A
Many genes in fish have species-specific asymmetric rates of molecular evolution
00
64277128 2005 BRIEFINGS IN BIOINFORMATICS 6 (1): 6-22
Batzoglou S
The many faces of sequence alignment
25
65354299 2006 BULLETIN OF MATHEMATICAL BIOLOGY 68 (1): 179-196
Wendl MC
Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing
00
6615612 2004 CANADIAN JOURNAL OF PHYSIOLOGY AND PHARMACOLOGY 82 (12): 1053-1060
Hunter AL; Cruz RP; Cheyne BM; McManus BM; Granville DJ
Cytochrome p450 enzymes and cardiovascular disease
02
6718113 2004 CELL 119 (7): 1027-1040
Dorus S; Vallender EJ; Evans PD; Anderson JR; Gilbert SL; et al.
Accelerated evolution of nervous system genes in the origin of Homo sapiens
438
68224129 2005 CELL 120 (1): 15-20
Lewis BP; Burge CB; Bartel DP
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
5156
6915714 2004 CELL COMMUNICATION AND ADHESION 11 (5-6): 155-171
Cruciani V; Heintz KM; Husoy T; Hovig E; Warren DJ; et al.
The detection of hamster connexins: A comparison of expression profiles with wild-type mouse and the cancer-prone Min mouse
01
70279130 2005 CHEMICAL RESEARCH IN TOXICOLOGY 18 (3): 403-414
Hayes KR; Bradfield RA
Advances in toxicogenomics
07
#LCRNCRNode / Date / Journal / AuthorLCSGCS
712123300 2006 CHEMICAL SENSES 31 (2): 131-144
Schoenfeld TA; Cleland TA
Anatomical contributions to odorant sampling and representation in rodents: Zoning in on sniffing behavior
00
72110615 2004 CHEMICO-BIOLOGICAL INTERACTIONS 150 (1): 53-70
Shenton JM; Chen J; Uetrecht JP
Animal models of idiosyncratic drug reactions
18
73125131 2005 CHROMOSOME RESEARCH 13 (7): 707-715
Jiang ZH; Michal JJ; Melville JS; Baltzer HL
Multi-alignment of orthologous genome regions in five species provides new insights into the evolutionary make-up of mammalian genomes
01
74359301 2006 CHROMOSOME RESEARCH 14 (2): 187-202
Kuraku S; Ishijima J; Nishida-Umehara C; Agata K; Kuratani S; et al.
cDNA-based gene mapping and GC(3) profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids
00
75126132 2005 CIRCULATION RESEARCH 97 (3): 210-218
Kaneda R; Ueno S; Yamashita Y; Choi YL; Koinuma K; et al.
Genome-wide screening for target regions of histone deacetylases in cardiomyocytes
03
76111116 2004 COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING 7 (4): 345-359
Bazylak G; Nagels LJ; Geise HJ
Potentiometric quasi-array employing calixarene derivatives for the high-throughput similarity/diversity screening of beta-adrenergic and beta-blocking chiral drugs by HPLC
00
77279302 2006 COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING 9 (5): 389-397
Pedroso S; Guillen IA
Microarray and nanotechnology applications of functional nanoparticles
00
78118133 2005 COMPARATIVE GENOMICS 3388: 1-14
Berard S; Bergeron A; Chauve C
Conservation of combinatorial structures in evolution scenarios
12
79196134 2005 COMPUTATIONAL BIOLOGY AND CHEMISTRY 29 (1): 1-12
Makalowska I; Lin CF; Makalowski W
Overlapping genes in vertebrate genomes
05
80148135 2005 CURRENT GENOMICS 6 (7): 545-549
Freudenberg J; Fu YH; Ptacek LJ
Approaching inherited disease on a genomic scale
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
81364136 2005 CURRENT GENOMICS 6 (8): 589-595
Fedorova L; Fedorov A
Puzzles of the human genome: Why do we need our introns?
00
8214417 2004 CURRENT OPINION IN DRUG DISCOVERY & DEVELOPMENT 7 (5): 658-664
Aparicio SAJR; Powell J
Genetic approaches to unraveling G protein-coupled receptor biology
00
83561137 2005 CURRENT OPINION IN GENETICS & DEVELOPMENT 15 (6): 628-633
Adams MD
Conserved sequences and the evolution of gene regulatory signals
00
84246138 2005 CURRENT OPINION IN LIPIDOLOGY 16 (2): 179-191
Herrera VLM; Ruiz-Opazo N
Genetic studies in rat models: insights into cardiovascular disease
01
85874303 2006 CURRENT OPINION IN NEPHROLOGY AND HYPERTENSION 15 (2): 145-151
McBride MW; Graham D; Delles C; Dominiczak AF
Functional genomics in hypertension
00
86167304 2006 CURRENT OPINION IN PLANT BIOLOGY 9 (2): 149-156
Rabinowicz PD; Bennetzen JL
The maize genome as a model for efficient sequence analysis of large plant genomes
00
87294305 2006 CYTOGENETIC AND GENOME RESEARCH 112 (3-4): 261-269
Scott LA; Kuroiwa A; Matsuda Y; Wichman HA
X accumulation of LINE-1 retrotransposons in Tokudaia osimensis, a spiny rat with the karyotype XO
00
88122139 2005 DEVELOPMENTAL BRAIN RESEARCH 155 (2): 99-106
Kuwamura M; Muraguchi T; Matsui T; Ueno M; Takenaka S; et al.
Mutation at the Lmx1a locus provokes aberrant brain development in the rat
00
89111306 2006 DIABETOLOGIA 49 (3): 431-433
Gauguier D
Diabetes quantitative trait locus research: from physiology to genetics and back
00
90121140 2005 DNA SEQUENCE 16 (2): 151-155
Osada S; Imagawa M; Nishihara T
Organization of gene structure and expression of nuclear factor 1 family in rat
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
911109141 2005 DRUG METABOLISM REVIEWS 37 (2): 279-310
Wishart DS
Bioinformatics in drug development and assessment
01
921340142 2005 DRUG METABOLISM REVIEWS 37 (3): 511-564
Boukouvala S; Fakis G
Arylamine N-acetyltransferases: What we learn from genes and genomes
00
931418 2004 EJSO 30 (8): 905-906
Rew DA
The sequencing of the rat genone
00
94152143 2005 ENDOCRINOLOGY 146 (1): 406-413
Ueta Y; Fujihara H; Serino R; Dayanithi G; Ozawa H; et al.
Transgenic expression of enhanced green fluorescent protein enables direct visualization for physiological studies of vasopressin neurons and isolated nerve terminals of the rat
13
95136307 2006 EUKARYOTIC CELL 5 (5): 789-793
Stajich JE; Dietrich FS
Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans
00
96243144 2005 EUROPEAN JOURNAL OF IMMUNOLOGY 35 (1): 261-272
Nylenna O; Naper C; Vaage JT; Woon PY; Gauguier D; et al.
The genes and gene organization of the Ly49 region of the rat natural killer cell gene complex
05
97244308 2006 EUROPEAN JOURNAL OF IMMUNOLOGY 36 (1): 107-117
Savithri B; Khar A
A transmembrane-anchored rat RAE-1-like transcript as a ligand for NKR-P2, the rat ortholog of human and mouse NKG2D
00
9815919 2004 EUROPEAN JOURNAL OF NEUROSCIENCE 20 (12): 3244-3258
Koehl A; Schmidt N; Rieger A; Pilgram SM; Letunic I; et al.
Gene expression profiling of the rat superior olivary complex using serial analysis of gene expression
12
9919720 2004 EUROPEAN JOURNAL OF PHARMACOLOGY 500 (1-3): 385-398
Vercauteren FGG; Bergeron JJM; Vandesande F; Arckens L; Quirion R
Proteomic approaches in brain research and neuropharmacology
06
10018121 2004 EXPERT OPINION ON THERAPEUTIC TARGETS 8 (6): 587-596
Orth AP; Batalov S; Perrone M; Chanda SK
The promise of genomics to identify novel therapeutic targets
06

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