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Mon Jul 31 15:49:42 2006

Rat Genome Sequencing Project Consortium
Genome sequence of the Brown Norway rat
yields insights into mammalian evolution
NATURE 428 (6982): 493-521 APR 1 2004
and the citing papers
Nodes: 353, Authors: 2563, Journals: 153, Outer References: 13847, Words: 1363
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by journal name.

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#LCRNCRNode / Date / Journal / AuthorLCSGCS
30113580 2004 OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 8 (4): 289-305
Hunt E; Hanlon N; Leader DP; Bryce H; Dominiczak AF
The visual language of synteny
11
302155342 2006 ONCOLOGY REPORTS 15 (5): 1241-1248
Asada K; Asada R; Yoshiji H; Fukui H; Floyd RA; et al.
DNA cytosine methylation profile in various cancer-related genes is altered in cultured rat hepatocyte cell lines as compared with primary hepatocytes
00
303130254 2005 PEPTIDES 26 (10): 1835-1841
Daniels D; Suzuki A; Shapiro E; Luo LY; Yee DK; et al.
Rattus norvegicus melanocortin 3 receptor: A corrected sequence
00
304173255 2005 PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY 450 (1): 13-25
Soutourina O; Cheval L; Doucet A
Global analysis of gene expression in mammalian kidney
01
305245256 2005 PHARMACOGENOMICS 6 (7): 749-754
Salter AH
Large-scale databases in toxicogenomics
02
306275257 2005 PHASE II CONJUGATION ENZYMES AND TRANSPORT SYSTEMS 400: 22-46
Gardner-Stephen DA; Gregory PA; Mackenzie PI
Identification and characterization of functional hepatocyte nuclear factor 1-binding sites in UDP-glucuronosyltransferase genes
00
30713981 2004 PHYSIOLOGICAL GENOMICS 19 (1): 1-10
Wallace KJ; Wallis RH; Collins SC; Argoud K; Kaisaki PJ; et al.
Quantitative trait locus dissection in congenic strains of the Goto-Kakizaki rat identifies a region conserved with diabetes loci in human chromosome 1q
07
30815482 2004 PHYSIOLOGICAL GENOMICS 20 (1): 117-130
da Silva R; Lucchinetti E; Pasch T; Schaub MC; Zaugg M
Ischemic but not pharmacological preconditioning elicits a gene expression profile similar to unprotected myocardium
04
309228258 2005 PHYSIOLOGICAL GENOMICS 21 (1): 112-116
Grondin M; Eliopoulos V; Lambert R; Deng YS; Ariyarajah A; et al.
Complete and overlapping congenics proving the existence of a quantitative trait locus for blood pressure on Dahl rat chromosome 17
24
310152259 2005 PHYSIOLOGICAL GENOMICS 23 (1): 62-71
Lee SJ; Ways JA; Barbato JC; Essig D; Pettee K; et al.
Gene expression profiling of the left ventricles in a rat model of intrinsic aerobic running capacity
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
311119260 2005 PHYSIOLOGICAL GENOMICS 23 (2): 246-256
Twigger SN; Pasko D; Nie J; Shimoyama M; Bromberg S; et al.
Tools and strategies for physiological genomics: the Rat Genome Database
13
312184343 2006 PHYSIOLOGICAL GENOMICS 24 (3): 235-251
Jiang SY; Ramachandran S
Comparative and evolutionary analysis of genes encoding small GTPases and their activating proteins in eukaryotic genomes
00
313277344 2006 PHYSIOLOGICAL GENOMICS 25 (3): 405-413
Larson JH; Kumar CG; Everts RE; Green CA; Everts-van der Wind A; et al.
Discovery of eight novel divergent homologs expressed in cattle placenta
00
3142396345 2006 PHYSIOLOGICAL REVIEWS 86 (2): 709-746
Mullins LJ; Bailey MA; Mullins JJ
Hypertension, kidney, and transgenics: A fresh perspective
00
315338261 2005 PLANT PHYSIOLOGY 138 (3): 1301-1309
Schoof H; Spannagl M; Yang L; Ernst R; Gundlach H; et al.
Munich Information Center for Protein Sequences plant genome resources. A framework for integrative and comparative analyses
00
316244262 2005 PLOS BIOLOGY 3 (2): Art. No. e42
Keightley PD; Lercher MJ; Eyre-Walker A
Evidence for widespread degradation of gene control regions in hominid genomes
018
317268263 2005 PLOS GENETICS 1 (5): 507-513
Parker HG; Ostrander EA
Canine genomics and genetics: Running with the pack
01
318418264 2005 PLOS GENETICS 1 (6): 672-675
Pardi F; Goldman N
Species choice for comparative genomics: Being greedy works
00
31915183 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (39): 13994-14001
Hwang DG; Green P
Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution
622
32014884 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (47): 16543-16548
Ain R; Dai GL; Dunmore JH; Godwin AR; Soares MJ
A prolactin family paralog regulates reproductive adaptations to a physiological stressor
16
#LCRNCRNode / Date / Journal / AuthorLCSGCS
321347265 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (7): 2454-2459
Washietl S; Hofacker IL; Stadler PF
Fast and reliable prediction of noncoding RNAs
021
322337266 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (9): 3354-3359
Margulies EH; Maduro VVB; Thomas PJ; Tomkins JP; Amemiya CT; et al.
Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes
212
323233267 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (11): 4051-4056
Zhou Y; Mishra B
Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling
04
324424268 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (13): 4795-4800
Margulies EH; Vinson JP; Miller W; Jaffe DB; Lindblad-Toh K; et al.
An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing
512
325559269 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (16): 5767-5772
Grus WE; Shi P; Zhang YP; Zhang JZ
Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals
416
326318270 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (19): 6639-6640
Rodriguez I
Remarkable diversity of mammalian pheromone receptor repertoires
00
327121271 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (22): 7900-7905
McAuliffe JD; Jordan MI; Pachter L
Subtree power analysis and species selection for comparative genomics
11
328152272 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (26): 9230-9234
Fukami-Kobayashi K; Shiina T; Anzai T; Sano K; Yamazaki M; et al.
Genomic evolution of MHC class I region in primates
04
329135273 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (40): 14302-14307
Ryu BY; Kubota H; Avarbock MR; Brinster RL
Conservation of spermatogonial stem cell self-renewal signaling between mouse and rat
17
330222274 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (51): 18526-18531
Everts-van der Wind A; Larkin DM; Green CA; Elliott JS; Olmstead CA; et al.
A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution
12
#LCRNCRNode / Date / Journal / AuthorLCSGCS
331521346 2006 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 103 (8): 2740-2745
Kamal M; Xie XH; Lander ES
A large family of ancient repeat elements in the human genome is under strong selection
02
332268347 2006 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 103 (15): 5676-5681
Pereira TV; Salzano FM; Mostowska A; Trzeciak WH; Ruiz-Linares A; et al.
Natural selection and molecular evolution in primate PAX9 gene, a major determinant of tooth development
00
333157275 2005 PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 61 (4): 878-887
Ferrer-Costa C; Orozco M; de la Cruz X
Use of bioinformatics tools for the annotation of disease-associated mutations in animal models
00
334141276 2005 PROTEOMICS 5 (5): 1263-1273
Liu T; Qian WJ; Chen WNU; Jacobs JM; Moore RJ; et al.
Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: The human mammary epithelial cell proteome
05
3351172277 2005 PROTEOMICS 5 (11): 2819-2838
Shakib K; Norman JT; Fine LG; Brown LR; Godovac-Zimmermann J
Proteomics profiling of nuclear proteins for kidney fibroblasts suggests hypoxia, meiosis, and cancer may meet in the nucleus
02
336128348 2006 PROTEOMICS 6 (10): 2982-2990
Yang W; Liu P; Liu YS; Wang QS; Tong YP; et al.
Proteomic analysis of rat pheochromocytoma PC12 cells
00
337121349 2006 PULMONARY PHARMACOLOGY & THERAPEUTICS 19 (1): 70-73
Di Nicolantonio R; Kostka V; Kwitek A; Jacob H; Thomas WG; et al.
Fine mapping of Lvm1: a quantitative trait locus controlling heart size independently of blood pressure
00
338149278 2005 REPRODUCTION 129 (1): 1-7
Wrobel G; Primig M
Mammalian male germ cells are fertile ground for expression profiling of sexual reproduction
08
33913785 2004 SCIENCE 304 (5675): 1321-1325
Bejerano G; Pheasant M; Makunin I; Stephen S; Kent WJ; et al.
Ultraconserved elements in the human genome
27124
34032886 2004 SCIENCE 306 (5296): 636-640
Feingold EA; Good PJ; Guyer MS; Kamholz S; Liefer L; et al.
The ENCODE (ENCyclopedia of DNA elements) Project
1394
#LCRNCRNode / Date / Journal / AuthorLCSGCS
341231279 2005 SCIENCE 309 (5734): 613-617
Murphy WJ; Larkin DM; Everts-van der Wind A; Bourque G; Tesler G; et al.
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps
216
342131350 2006 THERIOGENOLOGY 65 (2): 288-298
Iwanami Y; Kobayashi T; Kato M; Hirabayashi M; Hochi S
Characteristics of rat round spermatids differentiated from spermatogonial cells during co-culture with Sertoli cells, assessed by flow cytometry, microinsemination and RT-PCR
00
343144280 2005 TOHOKU JOURNAL OF EXPERIMENTAL MEDICINE 206 (2): 163-171
Iwamoto M; Mizuiri S; Arita M; Hemmi H
Nuclear factor-kappa B activation in diabetic rat kidney: Evidence for involvement of P-selectin in diabetic nephropathy
00
34416487 2004 TOXICOLOGY 202 (1-2): 21-32
Plant N
Interaction networks: coordinating responses to xenobiotic exposure
04
3452157281 2005 TRANSGENIC RESEARCH 14 (5): 531-546
Tesson L; Cozzi J; Menoret S; Remy S; Usal C; et al.
Transgenic modifications of the rat genome
00
346468282 2005 TRENDS IN ECOLOGY & EVOLUTION 20 (4): 180-186
Ellegren H
The avian genome uncovered
03
34712788 2004 TRENDS IN GENETICS 20 (11): 563-569
Itoh N; Ornitz DM
Evolution of the Fgf and Fgfr gene families
049
34818689 2004 TRENDS IN GENETICS 20 (12): 631-639
Murphy WJ; Pevzner PA; O'Brien SJ
Mammalian phylogenomics comes of age
424
349130283 2005 TRENDS IN GENETICS 21 (2): 77-81
Eisenberg E; Nemzer S; Kinar Y; Sorek R; Rechavi G; et al.
Is abundant A-to-I RNA editing primate-specific?
210
3503133284 2005 TRENDS IN GENETICS 21 (12): 673-682
Coghlan A; Eichler EE; Oliver SG; Paterson AH; Stein L
Chromosome evolution in eukaryotes: a multi-kingdom perspective
01
#LCRNCRNode / Date / Journal / AuthorLCSGCS
351625351 2006 TRENDS IN GENETICS 22 (4): 187-193
Margulies EH; Chen CW; Green ED
Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons
00
352492352 2006 TRENDS IN GENETICS 22 (4): 232-240
Smits BMG; Cuppen E
Rat genetics: the next episode
00
353171353 2006 TRENDS IN NEUROSCIENCES 29 (4): 233-240
Vitaterna MH; Pinto LH; Takahashi JS
Large-scale mutagenesis and phenotypic screens for the nervous system and behavior in mice
00

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