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Mon Jul 31 15:49:42 2006

Rat Genome Sequencing Project Consortium
Genome sequence of the Brown Norway rat
yields insights into mammalian evolution
NATURE 428 (6982): 493-521 APR 1 2004
and the citing papers
Nodes: 353, Authors: 2563, Journals: 153, Outer References: 13847, Words: 1363
Yearly output  |  Document Type  |  Language  |  Institution  |  Institution with Subdivision  |  Country
Collection span: 2004 - 2006
View: Overview   Sorted by journal name.

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#LCRNCRNode / Date / Journal / AuthorLCSGCS
2012296200 2005 INTERNATIONAL REVIEW OF CYTOLOGY - A SURVEY OF CELL BIOLOGY, VOL 247 247: 165-+
Kramerov DA; Vassetzky NS
Short retroposons in eukaryotic genomes
03
20214753 2004 INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE 45 (11): 3955-3963
Torrado M; Senatorov VV; Trivedi R; Fariss RN; Tomarev SI
Pdlim2, a novel PDZ-LIM domain protein, interacts with alpha-actinins and filamin A
02
203136201 2005 INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE 46 (6): 2140-2146
Chalberg TW; Genise HL; Vollrath D; Calos MP
phi C31 integrase confers genomic integration and long-term transgene expression in rat retina
04
204125202 2005 JOURNAL OF ANIMAL BREEDING AND GENETICS 122: 28-35
Duchesne A; Eggen A
Radiation hybrid mapping of genes and newly identified microsatellites in candidate regions for bovine arthrogryposis-palatoschisis and progressive ataxia based on comparative data from man, mouse and rat
00
205125203 2005 JOURNAL OF APPLIED PHYSIOLOGY 98 (1): 371-379
Mashimo T; Voigt B; Kuramoto T; Serikawa T
Rat Phenome Project: The untapped potential of existing rat strains
35
206144204 2005 JOURNAL OF APPLIED PHYSIOLOGY 98 (3): 838-844
Golder FJ; Zabka AG; Bavis RW; Baker-Herman T; Fuller DD; et al.
Differences in time-dependent hypoxic phrenic responses among inbred rat strains
02
20716554 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (25): 26627-26634
Quesada C; Sanchez LM; Alvarez J; Lopez-Otin C
Identification and characterization of human and mouse ovastacin - A novel metalloproteinase similar to hatching enzymes from arthropods, birds, amphibians, and fish
02
20813155 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (53): 56014-56023
Streb JW; Kitchen CM; Gelman IH; Miano JM
Multiple promoters direct expression of three AKAP12 isoforms with distinct subcellular and tissue distribution profiles
04
209139205 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (3): 1953-1961
Cal S; Quesada V; Llamazares M; Diaz-Perales A; Garabaya C; et al.
Human polyserase-2, a novel enzyme with three tandem serine protease domains in a single polypeptide chain
01
210154206 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (13): 12721-12731
Hoodbhoy T; Joshi S; Boja ES; Williams SA; Stanley P; et al.
Human sperm do not bind to rat zonae pellucidae despite the presence of four homologous glycoproteins
05
#LCRNCRNode / Date / Journal / AuthorLCSGCS
211144323 2006 JOURNAL OF BIOLOGICAL CHEMISTRY 281 (27): 18473-18481
Ugarte G; Brandan E
Transforming growth factor beta (TGF-beta) signaling is regulated by electrical activity in skeletal muscle cells - TGF-beta type I receptor is transcriptionally regulated by myotube excitability
00
212399324 2006 JOURNAL OF BIOMEDICAL INFORMATICS 39 (1): 51-61
Kosiol C; Bofkin L; Whelan S
Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome
01
213166207 2005 JOURNAL OF BIOMEDICAL OPTICS 10 (4): Art. No. 041204
Murakami T; Kobayashi E
Color-engineered rats and luminescent LacZ imaging: a new platform to visualize biological processes
02
214145208 2005 JOURNAL OF CELLULAR BIOCHEMISTRY 94 (5): 890-898
Arnosti DN; Kulkarni MM
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
01
215113856 2004 JOURNAL OF COMPARATIVE NEUROLOGY 476 (2): 186-201
Schoenfeld TA; Knott TK
Evidence for the disproportionate mapping of olfactory airspace onto the main olfactory bulb of the hamster
15
216176209 2005 JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 304B (1): 75-85
Tanzer A; Amemiya CT; Kim CB; Stadler PF
Evolution of microRNAs located within Hox gene clusters
09
217111210 2005 JOURNAL OF HEALTH SCIENCE 51 (2): 253-256
Ohta K; Osada S; Nishikawa J; Nishihara T
Cloning and characterization of a cDNA encoding the histone acetyltransferase monocytic leukemia zinc finger protein (MOZ) in the rat
00
21813957 2004 JOURNAL OF HYPERTENSION 22 (8): 1461-1464
Bianchi G; Tripodi G; Manunta P
Na+, kidney, hypertension and genes: lessons from rats
01
219197325 2006 JOURNAL OF INTEGRATIVE PLANT BIOLOGY 48 (1): 5-14
Feng CP; Mundy J
Gene discovery and functional analyses in the model plant Arabidopsis
00
220365211 2005 JOURNAL OF LIPID RESEARCH 46 (10): 2151-2167
Sabol SL; Brewer HB; Santamarina-Fojo S
The human ABCG1 gene: identification of LXR response elements that modulate expression in macrophages and liver
04
#LCRNCRNode / Date / Journal / AuthorLCSGCS
221125212 2005 JOURNAL OF MOLECULAR ENDOCRINOLOGY 35 (1): 1-12
Wang H; Horikawa Y; Jin L; Narita T; Yamada S; et al.
Gene expression profile in rat pancreatic islet and RINm5F cells
00
22211858 2004 JOURNAL OF MOLECULAR EVOLUTION 59 (5): 703-708
Nekrutenko A
Identification of novel exons from rat-mouse comparisons
00
223152213 2005 JOURNAL OF MOLECULAR EVOLUTION 60 (5): 566-576
Shi P; Bielawski JP; Yang H; Zhang YP
Adaptive diversification of vomeronasal receptor 1 genes in rodents
14
224151326 2006 JOURNAL OF NEUROPHYSIOLOGY 95 (1): 187-195
Li C; Horn JP
Physiological classification of sympathetic neurons in the rat superior cervical ganglion
00
22516859 2004 JOURNAL OF NEUROSCIENCE 24 (23): 5410-5419
Cirelli C; Tononi G
Locus ceruleus control of state-dependent gene expression
012
226128214 2005 JOURNAL OF NUTRITION 135 (9): 2144-2150
Sunde RA; Evenson JK; Thompson KM; Sachdev SW
Dietary selenium requirements based on glutathione peroxidase-1 activity and mRNA levels and other Se-dependent parameters are not increased by pregnancy and lactation in rats
02
2271158327 2006 JOURNAL OF PERINATAL MEDICINE 34 (3): 185-195
Genuis SJ
The chemical erosion of human health: adverse environmental exposure and in-utero pollution determinants of congenital disorders and chronic disease
00
228120328 2006 JOURNAL OF THE ROYAL SOCIETY INTERFACE 3 (7): 345-349
Crutchfield JP; Gornerup O
Objects that make objects: the population dynamics of structural complexity
00
229233215 2005 JOURNAL OF VIROLOGY 79 (18): 12035-12044
Barr SD; Leipzig J; Shinn P; Ecker JR; Bushman FD
Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome
00
230151216 2005 JOURNAL OF VIROLOGY 79 (23): 14698-14707
Cantrell MA; Ederer MM; Erickson IK; Swier VJ; Baker RJ; et al.
MysTR: an endogenous retrovirus family in mammals that is undergoing recent amplifications to unprecedented copy numbers
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
231150217 2005 KIDNEY INTERNATIONAL 68 (6): 2462-2472
Van Dijk SJ; Specht PAC; Lutz MM; Lazar J; Jacob HJ; et al.
Interaction between Rf-1 and Rf-4 quantitative trait loci increases susceptibility to renal damage in double congenic rats
11
232236329 2006 KIDNEY INTERNATIONAL 69 (8): 1369-1376
Van Dijk SJ; Specht PAC; Lazar J; Jacob HJ; Provoost AP
Synergistic QTL interactions between Rf-1 and Rf-3 increase renal damage susceptibility in double congenic rats
00
23312260 2004 MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 17 (3-6): 353-358
Behr VC; Weber T; Neuberger T; Vroemen M; Weidner N; et al.
High-resolution MR imaging of the rat spinal cord in vivo in a wide-bore magnet at 17.6 Tesla
03
23417061 2004 MAMMALIAN GENOME 15 (11): 887-900
Stover CM; Lynch NJ; Hanson SJ; Windbichler M; Gregory SG; et al.
Organization of the MASP2 locus and its expression profile in mouse and rat
02
235252218 2005 MAMMALIAN GENOME 16 (6): 442-459
Chantry-Darmon U; Urien C; Hayes H; Bertaud M; Chadi-Taourit S; et al.
Construction of a cytogenetically anchored microsatellite map in rabbit
00
236235219 2005 MAMMALIAN GENOME 16 (12): 934-941
Wen GP; Ramser J; Taudien S; Gausmann U; Blechschmidt K; et al.
Validation of mRNA/EST-based gene predictions in human Xp11.4 revealed differences to the organization of the orthologous mouse locus
00
237348330 2006 MAMMALIAN GENOME 17 (6): 480-489
Petretto E; Mangion J; Pravanec M; Hubner N; Aitman TJ
Integrated gene expression profiling and linkage analysis in the rat
00
238263331 2006 MARINE BIOLOGY 149 (1): 107-115
Watanabe H; Iguchi T
Using ecotoxicogenomics to evaluate the impact of chemicals on aquatic organisms
00
239180220 2005 MECHANISMS OF AGEING AND DEVELOPMENT 126 (6-7): 767-782
Maya-Mendoza A; Hernandez-Munoz R; Gariglio P; Aranda-Anzaldo A
Natural ageing in the rat liver correlates with progressive stabilisation of DNA-nuclear matrix interactions and withdrawal of genes from the nuclear substructure
00
24012962 2004 MECHANISMS OF DEVELOPMENT 121 (7-8): 903-913
Khorasani MZ; Hennig S; Imre G; Asakawa S; Palczewski S; et al.
A first generation physical map of the medaka genome in BACs essential for positional cloning and clone-by-clone based genomic sequencing
09
#LCRNCRNode / Date / Journal / AuthorLCSGCS
241189332 2006 MEDICINAL RESEARCH REVIEWS 26 (1): 63-87
Glocker MO; Guthke R; Kekow J; Thiesen HJ
Rheumatoid arthritis, a complex multifactorial disease: On the way toward individualized medicine
00
24218163 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (10): 1923-1937
Bertrand W; Brunet FG; Escriva H; Parmentier G; Laudet V; et al.
Evolutionary genomics of nuclear receptors: From twenty-five ancestral genes to derived endocrine systems
011
243135221 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (2): 193-199
Kosiol C; Goldman N
Different versions of the Dayhoff rate matrix
05
244234222 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (2): 360-366
Misceo D; Cardone MF; Carbone L; D'Addabbo P; de Jong PJ; et al.
Evolutionary history of chromosome 20
01
245245223 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (4): 1044-1052
Good JM; Nachman MW
Rates of protein evolution are positively correlated with developmental timing of expression during mouse spermatogenesis
06
246135224 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (4): 1147-1155
Zhang JZ; He XL
Significant impact of protein dispensability on the instantaneous rate of protein evolution
012
247143225 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (7): 1546-1554
Gogolevskaya IK; Koval AP; Kramerov DA
Evolutionary history of 4.5SH RNA
11
248144226 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (9): 1845-1852
Podlaha O; Webb DM; Tucker PK; Zhang JZ
Positive selection for indel substitutions in the rodent sperm protein Catsper1
14
249148227 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (10): 1983-1991
Gentles AJ; Kohany O; Jurka J
Evolutionary diversity and potential recombinogenic role of integration targets of non-LTR retrotransposons
03
2503121228 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (11): 2275-2284
Blair JE; Hedges SB
Molecular phylogeny and divergence times of deuterostome animals
07
#LCRNCRNode / Date / Journal / AuthorLCSGCS
251467333 2006 MOLECULAR BIOLOGY AND EVOLUTION 23 (3): 675-682
Chen FC; Wang SS; Chen CJ; Li WH; Chuang TJ
Alternatively and constitutively spliced exons are subject to different evolutionary forces
02
252365334 2006 MOLECULAR BIOLOGY AND EVOLUTION 23 (5): 927-940
Ezawa K; OOta S; Saitou N
Genome-wide search of gene conversions in duplicated genes of mouse and rat
00
25313064 2004 MOLECULAR BRAIN RESEARCH 129 (1-2): 20-32
Tanaka T; Horikawa Y; Kawamoto T; Kabe-Sakurai N; Takeda J; et al.
Expression profile of mRNAs from rat hippocampus and its application to microarray
00
25416065 2004 MOLECULAR THERAPY 10 (2): 344-354
Nicol CG; Graham D; Miller WH; White SJ; Smith TAG; et al.
Effect of adenovirus serotype 5 fiber and penton modifications on in vivo tropism in rats
011
255258229 2005 MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS 575 (1-2): 102-115
Luhe A; Suter L; Ruepp S; Singer T; Weiser T; et al.
Toxicogenomics in the pharmaceutical industry: Hollow promises or real benefit?
04
256022666 2004 NATURE 428 (6982): 493-521
Gibbs RA; Weinstock GM; Metzker ML; Muzny DM; Sodergren EJ; et al.
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
352352
25712567 2004 NATURE 429 (6991): 558-562
Bazykin GA; Kondrashov FA; Ogurtsov AY; Sunyaev S; Kondrashov AS
Positive selection at sites of multiple amino acid replacements since rat-mouse divergence
05
25812368 2004 NATURE 431 (7011): 927-930
She XW; Jiang ZX; Clark RL; Liu G; Cheng Z; et al.
Shotgun sequence assembly and recent segmental duplications within the human genome
437
25915769 2004 NATURE 431 (7011): 946-957
Jaillon O; Aury JM; Brunet F; Petit JL; Stange-Thomann N; et al.
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
13122
26022870 2004 NATURE 431 (7011): 988-993
Nobrega MA; Zhu YW; Plajzer-Frick I; Afzal V; Rubin EM
Megabase deletions of gene deserts result in viable mice
725
#LCRNCRNode / Date / Journal / AuthorLCSGCS
261316571 2004 NATURE 432 (7018): 695-716
Hillier LW; Miller W; Birney E; Warren W; Hardison RC; et al.
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
40201
26221972 2004 NATURE 432 (7018): 761-764
Wallis JW; Aerts J; Groenen MAM; Crooijmans RPMA; Layman D; et al.
A physical map of the chicken genome
127
26334873 2004 NATURE 432 (7020): 988-994
Martin J; Han C; Gordon LA; Terry A; Prabhakar S; et al.
The sequence and analysis of duplication-rich human chromosome 16
211
264130230 2005 NATURE 433 (7026): 633-638
Jordan IK; Kondrashov FA; Adzhubei IA; Wolf YI; Koonin EV; et al.
A universal trend of amino acid gain and loss in protein evolution
013
265267231 2005 NATURE 434 (7031): 325-337
Ross MT; Grafham DV; Coffey AJ; Scherer S; McLay K; et al.
The DNA sequence of the human X chromosome
360
266337232 2005 NATURE 434 (7031): 338-345
Xie XH; Lu J; Kulbokas EJ; Golub TR; Mootha V; et al.
Systematic discovery of regulatory motifs in human promoters and 3 ' UTRs by comparison of several mammals
7113
267350233 2005 NATURE 434 (7034): 724-731
Hillier LW; Graves TA; Fulton RS; Fulton LA; Pepin KH; et al.
Generation and annotation of the DNA sequences of human chromosomes 2 and 4
210
268144234 2005 NATURE 435 (7044): 903-910
Muotri AR; Chu VT; Marchetto MCN; Deng W; Moran JV; et al.
Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition
124
2696172235 2005 NATURE 437 (7055): 69-87
Mikkelsen TS; Hillier LW; Eichler EE; Zody MC; Jaffe DB; et al.
Initial sequence of the chimpanzee genome and comparison with the human genome
888
270634236 2005 NATURE 437 (7058): 551-555
Nusbaum C; Zody MC; Borowsky ML; Kamal M; Kodira CD; et al.
DNA sequence and analysis of human chromosome 18
03
#LCRNCRNode / Date / Journal / AuthorLCSGCS
271229237 2005 NATURE 437 (7062): 1149-1152
Andolfatto P
Adaptive evolution of non-coding DNA in Drosophila
015
27214119238 2005 NATURE 438 (7069): 803-819
Lindblad-Toh K; Wade CM; Mikkelsen TS; Karlsson EK; Jaffe DB; et al.
Genome sequence, comparative analysis and haplotype structure of the domestic dog
429
273231335 2006 NATURE 440 (7082): 346-351
Scherer SE; Muzny DM; Buhay CJ; Chen R; Cree A; et al.
The finished DNA sequence of human chromosome 12
00
274328336 2006 NATURE 440 (7083): 497-500
Taylor TD; Noguchi H; Totoki Y; Toyoda A; Kuroki Y; et al.
Human chromosome 11 DNA sequence and analysis including novel gene identification
00
275296337 2006 NATURE 441 (7097): 1087-1093
Muotri AR; Gage FH
Generation of neuronal variability and complexity
00
276343338 2006 NATURE 441 (7097): 1103-1108
Patterson N; Richter DJ; Gnerre S; Lander ES; Reich D
Genetic evidence for complex speciation of humans and chimpanzees
00
2771474 2004 NATURE BIOTECHNOLOGY 22 (5): 529-531
Kola I
Putting the rat on the map
00
27811075 2004 NATURE GENETICS 36 (5): 441-442
Wallace CA; Aitman TJ
The rat comes clean
11
279250239 2005 NATURE GENETICS 37 (3): 243-253
Hubner N; Wallace CA; Zimdahl H; Petretto E; Schulz H; et al.
Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease
858
280315339 2006 NATURE GENETICS 38 (2): 140-141
Hubner N
Expressing physiology
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
281230340 2006 NATURE GENETICS 38 (2): 234-239
Malek RL; Wang HY; Kwitek AE; Greene AS; Bhagabati N; et al.
Physiogenomic resources for rat models of heart, lung and blood disorders
12
282133240 2005 NATURE IMMUNOLOGY 6 (7): 689-697
Saveanu L; Carroll O; Lindo V; Del Val M; Lopez D; et al.
Concerted peptide trimming by human ERAP1 and ERAP2 aminopeptidase complexes in the endoplasmic reticulum
012
283230241 2005 NATURE METHODS 2 (2): 105-111
Ng P; Wei CL; Sung WK; Chiu KP; Lipovich L; et al.
Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation
015
28412676 2004 NATURE NEUROSCIENCE 7 (11): 1175-1179
Crabbe JC; Morris RGM
Festina lente: Late-night thoughts on high-throughput screening of mouse behavior
06
285113477 2004 NATURE REVIEWS GENETICS 5 (6): 435-445
Ellegren H
Microsatellites: Simple sequences with complex evolution
140
28615878 2004 NATURE REVIEWS GENETICS 5 (8): 578-U1
Meyers BC; Scalabrin S; Morgante M
Mapping and sequencing complex genomes: Let's get physical!
113
287334242 2005 NATURE REVIEWS GENETICS 6 (8): 643-649
Hitte C; Madeoy J; Kirkness EF; Priat C; Lorentzen TD; et al.
Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping
13
2884111243 2005 NATURE REVIEWS GENETICS 6 (9): 699-708
Gregory TR
Synergy between sequence and size in large-scale genomics
01
2891107244 2005 NATURE REVIEWS MOLECULAR CELL BIOLOGY 6 (9): 702-714
Yates JR; Gilchrist A; Howell KE; Bergeron JJM
Proteomics of organelles and large cellular structures
09
2901162341 2006 NEUROBIOLOGY OF AGING 27 (8): 1060-1077
Reddy PH; McWeeney S
Mapping cellular transcriptosomes in autopsied Alzheimer's disease subjects and relevant animal models
02
#LCRNCRNode / Date / Journal / AuthorLCSGCS
291124245 2005 NEUROBIOLOGY OF LEARNING AND MEMORY 84 (1): 69-73
Hermes GL; Jacobs LF; McClintock MK
The sectored foraging field: A novel design to quantify spatial strategies, learning, memory, and emotion
00
2921155246 2005 NEURON 48 (3): 417-430
Ache BW; Young JM
Olfaction: Diverse species, conserved principles
03
29313479 2004 NUCLEIC ACIDS RESEARCH 32: W273-W279
Frazer KA; Pachter L; Poliakov A; Rubin EM; Dubchak I
VISTA: computational tools for comparative genomics
022
294115247 2005 NUCLEIC ACIDS RESEARCH 33: D25-D28
Tateno Y; Saitou N; Okubo K; Sugawara H; Gojobori T
DDBJ in collaboration with mass-sequencing teams on annotation
05
295116248 2005 NUCLEIC ACIDS RESEARCH 33: D442-D446
Veeramachaneni V; Makalowski W
DED: Database of Evolutionary Distances
02
296229249 2005 NUCLEIC ACIDS RESEARCH 33: D447-D453
Hubbard T; Andrews D; Caccamo M; Cameron G; Chen Y; et al.
Ensembl 2005
091
297128250 2005 NUCLEIC ACIDS RESEARCH 33: D485-D491
de la Cruz N; Bromberg S; Pasko D; Shimoyama M; Twigger S; et al.
The Rat Genome Database (RGD): developments towards a phenome database
04
298117251 2005 NUCLEIC ACIDS RESEARCH 33: D492-D494
Petersen G; Johnson P; Andersson L; Klinga-Levan K; Gomez-Fabre PM; et al.
RatMap - rat genome tools and data
01
299232252 2005 NUCLEIC ACIDS RESEARCH 33: D505-D510
Boccia A; Petrillo M; di Bernardo D; Guffanti A; Mignone F; et al.
DG-CST (Disease Gene Conserved Sequence Tags), a database of human-mouse conserved elements associated to disease genes
02
300145253 2005 NUCLEIC ACIDS RESEARCH 33 (3): 946-954
Zdobnov EM; Campillos M; Harrington ED; Torrents D; Bork P
Protein coding potential of retroviruses and other transposable elements in vertebrate genomes
04

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