| Missing Links? Citation Matrix | Graphs | Glossary HistCite Guide About |
Nodes: 228,
Authors: 979,
Journals: 81,
Outer References: 7806,
Words: 937
Collection span: 2003 - 2005
View: Overview. Sorted by year, source, volume, issue, page.
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
|---|---|---|---|---|---|
| 1 | 1 | 47 | 1 2003 BMC EVOLUTIONARY BIOLOGY 3: Art. No. 19 Moses AM; Chiang DY; Kellis M; Lander ES; Eisen MB Position specific variation in the rate of evolution in transcription factor binding sites | 0 | 11 |
| 2 | 2 | 73 | 2 2003 CELL 115 (4): 389-399 Tsong AE; Miller MG; Raisner RM; Johnson AD Evolution of a combinatorial transcriptional circuit: A case study in yeasts | 1 | 12 |
| 3 | 1 | 69 | 3 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 217-225 Zhang MQ Prediction, annotation, and analysis of human promoters | 0 | 1 |
| 4 | 1 | 64 | 4 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 345-357 Weston AD; Baliga NS; Bonneau R; Hood L Systems approaches applied to the study of Saccharomyces cerevisiae and Halobacterium sp. | 0 | 2 |
| 5 | 4 | 96 | 5 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 431-443 Jorgensen P; Breitkreutz BJ; Breitkreutz K; Stark C; Liu G; et al. Harvesting the genome's bounty: Integrative genomics | 0 | 0 |
| 6 | 1 | 55 | 6 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13 (6): 583-587 Sankoff D Rearrangements and chromosomal evolution | 0 | 5 |
| 7 | 1 | 46 | 7 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13 (6): 604-610 Cooper GM; Sidow A Genomic regulatory regions: insights from comparative sequence analysis | 2 | 10 |
| 8 | 1 | 61 | 8 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13 (6): 611-616 Li H; Wang W Dissecting the transcription networks of a cell using computational genomics | 0 | 3 |
| 9 | 1 | 47 | 9 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13 (6): 623-628 Copley RR; Goodstadt L; Ponting C Eukaryotic domain evolution inferred from genome comparisons | 0 | 6 |
| 10 | 1 | 63 | 10 2003 EMBO JOURNAL 22 (18): 4738-4747 Harismendy O; Gendrel CG; Soularue P; Gidrol X; Sentenac A; et al. Genome-wide location of yeast RNA polymerase III transcription machinery | 2 | 10 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 11 | 1 | 58 | 11 2003 EMBO JOURNAL 22 (21): 5951-5961 Perez-Martinez X; Broadley SA; Fox TD Mss51p promotes mitochondrial Cox1p synthesis and interacts with newly synthesized Cox1p | 0 | 2 |
| 12 | 1 | 50 | 12 2003 GENOME BIOLOGY 4 (7): Art. No. R43 Chiang DY; Moses AM; Kellis M; Lander ES; Eisen MB Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts | 0 | 12 |
| 13 | 1 | 44 | 13 2003 GENOME BIOLOGY 4 (12): Art. No. 122 Dubchak I; Frazer K Multi-species sequence comparison: the next frontier in genome annotation | 0 | 3 |
| 14 | 1 | 67 | 14 2003 GENOME RESEARCH 13 (12): 2507-2518 Margulies EH; Blanchette M; Haussler D; Green ED Identification and characterization of multi-species conserved sequences | 6 | 39 |
| 15 | 1 | 5 | 15 2003 HEREDITY 91 (6): 533-534 Furlong RF; Yang ZH Comparative genomics - Comparative genomics coming of age | 0 | 0 |
| 16 | 1 | 45 | 16 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278 (42): 41519-41527 Oishi K; Miyazaki K; Kadota K; Kikuno R; Nagase T; et al. Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes | 0 | 14 |
| 17 | 1 | 35 | 17 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278 (52): 52641-52650 Lucau-Danila A; Delaveau T; Lelandais G; Devaux F; Jacq C Competitive promoter occupancy by two yeast paralogous transcription factors controlling the multidrug resistance phenomenon | 0 | 3 |
| 18 | 1 | 85 | 18 2003 JOURNAL OF GENERAL VIROLOGY 84: 2895-2908 Davison AJ; Benko M; Harrach B Genetic content and evolution of adenoviruses | 0 | 20 |
| 19 | 1 | 63 | 19 2003 JOURNAL OF MOLECULAR BIOLOGY 333 (1): 1-20 Giuliodori S; Percudani R; Braglia P; Ferrari R; Guffanti E; et al. A composite upstream sequence motif potentiates tRNA gene transcription in yeast | 0 | 1 |
| 20 | 1 | 27 | 20 2003 JOURNAL OF MOLECULAR BIOLOGY 333 (5): 885-892 Harrison PM; Carriero N; Liu Y; Gerstein M A 'PolyORFomic' analysis of prokaryote genomes using disabled-homology filtering reveals conserved but undiscovered short ORFs | 0 | 2 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 21 | 1 | 19 | 21 2003 JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 6 (1): 19-28 De Hertogh B; Talla E; Tekaia F; Beyne E; Sherman D; et al. Novel transporters from hemiascomycete yeasts | 0 | 0 |
| 22 | 1 | 4 | 22 2003 JOURNAL OF NEUROENDOCRINOLOGY 15 (10): 905-906 Hazlerigg D You probably can't afford it, but can you afford to ignore it? | 0 | 0 |
| 23 | 1 | 72 | 23 2003 MOLECULAR AND CELLULAR BIOLOGY 23 (18): 6564-6573 Chahwan C; Nakamura TM; Sivakumar S; Russell P; Rhind N The fission yeast Rad32 (Mre11)-Rad50-Nbs1 complex is required for the S-phase DNA damage checkpoint | 0 | 10 |
| 24 | 1 | 101 | 24 2003 MOLECULAR BIOLOGY OF THE CELL 14 (12): 4931-4946 Nekrasov VS; Smith MA; Peak-Chew S; Kilmartin JV Interactions between centromere complexes in Saccharomyces cerevisiae | 1 | 9 |
| 25 | 3 | 56 | 25 2003 MOLECULAR CELL 12 (6): 1353-1365 Hazbun TR; Malmstrom L; Anderson S; Graczyk BJ; Fox B; et al. Assigning function to yeast proteins by integration of technologies | 1 | 23 |
| 26 | 1 | 10 | 26 2003 NATURE 423 (6937): 233-234 Salzberg SL Genomics - Yeast rises again | 2 | 2 |
| 27 | 0 | 50 | 27 2003 NATURE 423 (6937): 241-254 Kellis M; Patterson N; Endrizzi M; Birren B; Lander ES Sequencing and comparison of yeast species to identify genes and regulatory elements | 227 | 227 |
| 28 | 2 | 48 | 28 2003 NATURE 425 (6959): 686-691 Huh WK; Falvo JV; Gerke LC; Carroll AS; Howson RW; et al. Global analysis of protein localization in budding yeast | 13 | 202 |
| 29 | 2 | 29 | 29 2003 NATURE 425 (6959): 737-741 Ghaemmaghami S; Huh W; Bower K; Howson RW; Belle A; et al. Global analysis of protein expression in yeast | 14 | 138 |
| 30 | 1 | 51 | 30 2003 NATURE 425 (6960): 798-804 Rokas A; Williams BL; King N; Carroll SB Genome-scale approaches to resolving incongruence in molecular phylogenies | 6 | 57 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 31 | 2 | 8 | 31 2003 NATURE 426 (6968): 750-751 Dennis C Genomics - Compare and contrast | 0 | 0 |
| 32 | 1 | 40 | 32 2003 NATURE GENETICS 35 (1): 57-64 Yvert G; Brem RB; Whittle J; Akey JM; Foss E; et al. Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors | 4 | 31 |
| 33 | 1 | 1 | 33 2003 NATURE REVIEWS GENETICS 4 (6): 404-404 Skipper M Comparative genomics - Maximize your power | 0 | 0 |
| 34 | 1 | 76 | 34 2003 NATURE REVIEWS MICROBIOLOGY 1 (2): 106-116 Johnson A The biology of mating in Candida albicans | 1 | 10 |
| 35 | 1 | 19 | 35 2003 NUCLEIC ACIDS RESEARCH 31 (16): Art. No. e94 Fukumura R; Takahashi H; Saito T; Tsutsumi Y; Fujimori A; et al. A sensitive transcriptome analysis method that can detect unknown transcripts | 0 | 2 |
| 36 | 1 | 33 | 36 2003 PLOS BIOLOGY 1 (2): 156-160 Hardison RC Comparative genomics | 0 | 1 |
| 37 | 1 | 118 | 37 2003 PLOS BIOLOGY 1 (2): 166-+ Stein LD; Bao ZR; Blasiar D; Blumenthal T; Brent MR; et al. The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics | 3 | 23 |
| 38 | 1 | 66 | 38 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100 (23): 13134-13139 Famili I; Forster J; Nielson J; Palsson BO Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network | 0 | 16 |
| 39 | 1 | 25 | 39 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100 (26): 15661-15665 Yang J; Lusk R; Li WH Organismal complexity, protein complexity, and gene duplicability | 0 | 7 |
| 40 | 1 | 45 | 40 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100 (26): 15764-15769 Kushner DB; Lindenbach BD; Grdzelishvili VZ; Noueiry AO; Paul SM; et al. Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus | 0 | 5 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 41 | 1 | 24 | 41 2003 RNA-A PUBLICATION OF THE RNA SOCIETY 9 (11): 1323-1332 Seto AG; Umansky K; Tzfati Y; Zaug AJ; Blackburn EH; et al. A template-proximal RNA paired element contributes to Saccharomyces cerevisiae telomerase activity | 2 | 6 |
| 42 | 1 | 60 | 42 2003 SCIENCE 301 (5634): 793-797 Eichler EE; Sankoff D Structural dynamics of eukaryotic chromosome evolution | 2 | 39 |
| 43 | 1 | 32 | 43 2003 TRENDS IN GENETICS 19 (11): 603-607 Doak TG; Cavalcanti ARO; Stover NA; Dunn DM; Weiss R; et al. Sequencing the Oxytricha trifallax macronuclear genome: a pilot project | 0 | 3 |
| 44 | 1 | 35 | 44 2003 YEAST 20 (14): 1177-1188 Heyken WT; Wagner C; Wittmann J; Albrecht A; Schuller HJ Negative regulation of phospholipid biosynthesis in Saccharomyces cerevisiae by a Candida albicans orthologue of OPII | 0 | 0 |
| 45 | 1 | 58 | 45 2003 YEAST 20 (14): 1213-1226 Fernandez-Espinar MT; Barrio E; Querol A Analysis of the genetic variability in the species of the Saccharomyces sensu stricto complex | 2 | 4 |
| 46 | 2 | 24 | 46 2004 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 3240: 326-337 Sundararajan M; Brudno M; Small K; Sidow A; Batzoglou S Chaining algorithms for alignment of draft sequence | 0 | 0 |
| 47 | 1 | 49 | 47 2004 AMERICAN JOURNAL OF HUMAN GENETICS 75 (2): 294-304 Hammond CJ; Andrew T; Mak YT; Spector TD A susceptibility locus for myopia in the normal population is linked to the PAX6 gene region on chromosome 11: A genomewide scan of dizygotic twins | 0 | 4 |
| 48 | 1 | 40 | 48 2004 AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY 31 (2): S72-S75 [Anon] Identifying regulatory networks - Lessons from yeast to humans | 0 | 0 |
| 49 | 3 | 193 | 49 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 15-56 Miller W; Makova KD; Nekrutenko A; Hardison RC Comparative genomics | 0 | 2 |
| 50 | 2 | 173 | 50 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 443-477 Borevitz JO; Ecker JR Plant genomics: The third wave | 0 | 1 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 51 | 3 | 159 | 51 2004 BIOCHEMICAL JOURNAL 381: 1-12 Wei GH; Liu DP; Liang CC Charting gene regulatory networks: strategies, challenges and perspectives | 0 | 2 |
| 52 | 1 | 28 | 52 2004 BIOINFORMATICS 20 (13): 1993-2003 Ihmels J; Bergmann S; Barkai N Defining transcription modules using large-scale gene expression data | 0 | 3 |
| 53 | 1 | 30 | 53 2004 BIOINFORMATICS 20 (15): 2370-2379 Simonis N; Wodak SJ; Cohen GN; van Helden J Combining pattern discovery and discriminant analysis to predict gene co-regulation | 1 | 1 |
| 54 | 1 | 49 | 54 2004 BIOINFORMATICS 20 (16): 2738-2750 Grad YH; Roth FP; Halfon MS; Church GM Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura | 0 | 0 |
| 55 | 1 | 18 | 55 2004 BMC BIOINFORMATICS 5: Art. No. 27 Bigelow HR; Wenick AS; Wong A; Hobert O CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting | 0 | 8 |
| 56 | 1 | 22 | 56 2004 BMC BIOINFORMATICS 5: Art. No. 57 Cora D; Di Cunto F; Provero P; Silengo L; Caselle M Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs | 0 | 3 |
| 57 | 1 | 28 | 57 2004 BMC BIOINFORMATICS 5: Art. No. 62 Conant GC; Wagner A A fast algorithm for determining the best combination of local alignments to a query sequence | 0 | 0 |
| 58 | 2 | 35 | 58 2004 BMC BIOINFORMATICS 5: Art. No. 170 Sinha S; Blanchette M; Tompa M PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences | 0 | 2 |
| 59 | 1 | 43 | 59 2004 BMC GENOMICS 5: Art. No. 59 Nagaraj VH; O'Flanagan RA; Bruning AR; Mathias JR; Vershon AK; et al. Combined analysis of expression data and transcription factor binding sites in the yeast genome | 0 | 3 |
| 60 | 1 | 15 | 60 2004 BRIEFINGS IN BIOINFORMATICS 5 (1): 9-22 Dwight SS; Balakrishnan R; Christie KR; Costanzo MC; Dolinski K; et al. Saccharomyces genome database: Underlying principles and organisation | 2 | 3 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 61 | 3 | 113 | 61 2004 CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE 26 (1): 19-30 Hsiang T; Baillie DL Recent progress, developments, and issues in comparative fungal genomics | 0 | 1 |
| 62 | 1 | 57 | 62 2004 CELL 116 (5): 699-709 Basehoar AD; Zanton SJ; Pugh BF Identification and distinct regulation of yeast TATA box-containing genes | 2 | 14 |
| 63 | 4 | 62 | 63 2004 CELL 118 (1): 31-44 Mnaimneh S; Davierwala AP; Haynes J; Moffat J; Peng WT; et al. Exploration of essential gene functions via titratable promoter alleles | 2 | 12 |
| 64 | 1 | 49 | 64 2004 CELL 119 (7): 969-979 Martin DE; Soulard A; Hall MN TOR regulates ribosomal protein gene expression via PKA and the forkhead transcription factor FHL1 | 0 | 1 |
| 65 | 1 | 45 | 65 2004 CELLULAR AND MOLECULAR LIFE SCIENCES 61 (10): 1208-1220 Creutz CE; Snyder SL; Schulz TA Characterization of the yeast tricalbins: membrane-bound multi-C2-domain proteins that form complexes involved in membrane trafficking | 0 | 0 |
| 66 | 1 | 184 | 66 2004 CELLULAR AND MOLECULAR LIFE SCIENCES 61 (13): 1615-1632 Hilt W Ubiquitin-proteasome system - Targets of programmed destruction: a primer to regulatory proteolysis in yeast | 0 | 0 |
| 67 | 2 | 20 | 67 2004 CURRENT BIOLOGY 14 (10): R392-R394 Wolfe K Evolutionary genomics: Yeasts accelerate beyond BLAST | 0 | 1 |
| 68 | 1 | 19 | 68 2004 CURRENT BIOLOGY 14 (14): R565-R567 Lustig AJ Telomerase RNA: A flexible RNA scaffold for telomerase biosynthesis | 0 | 0 |
| 69 | 1 | 37 | 69 2004 CURRENT GENETICS 45 (3): 121-128 Roth S; Kumme J; Schuller HJ Transcriptional activators Cat8 and Sip4 discriminate between sequence variants of the carbon source-responsive promoter element in the yeast Saccharomyces cerevisiae | 0 | 1 |
| 70 | 1 | 43 | 70 2004 CURRENT GENETICS 45 (6): 360-370 Bond U; Neal C; Donnelly D; James TC Aneuploidy and copy number breakpoints in the genome of lager yeasts mapped by microarray hybridisation | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 71 | 1 | 127 | 71 2004 CURRENT MOLECULAR MEDICINE 4 (6): 563-576 Horn D The molecular control of antigenic variation in Trypanosoma brucei | 0 | 0 |
| 72 | 1 | 60 | 72 2004 CURRENT OPINION IN BIOTECHNOLOGY 15 (1): 70-77 Herrgard MJ; Covert MW; Palsson BO Reconstruction of microbial transcriptional regulatory networks | 1 | 9 |
| 73 | 4 | 111 | 73 2004 CURRENT OPINION IN CELL BIOLOGY 16 (6): 602-613 Tyers M Cell cycle goes global | 0 | 0 |
| 74 | 1 | 44 | 74 2004 CURRENT OPINION IN CHEMICAL BIOLOGY 8 (1): 20-25 Rual JF; Hill DE; Vidal M ORFeome projects: gateway between genomics and omics | 1 | 9 |
| 75 | 1 | 40 | 75 2004 CURRENT OPINION IN MICROBIOLOGY 7 (4): 382-387 Llinas M; DeRisi JL Pernicious plans revealed: Plasmodium falciparum genome wide expression analysis | 0 | 0 |
| 76 | 6 | 53 | 76 2004 CURRENT OPINION IN MICROBIOLOGY 7 (5): 546-554 Hughes TR; Robinson MD; Mitsakakis N; Johnston M The promise of functional genomics: completing the encyclopedia of a cell | 0 | 1 |
| 77 | 4 | 53 | 77 2004 CURRENT OPINION IN MICROBIOLOGY 7 (6): 638-646 Chua G; Robinson MD; Morris Q; Hughes TR Transcriptional networks: reverse-engineering gene regulation on a global scale | 0 | 0 |
| 78 | 1 | 43 | 78 2004 EMBO JOURNAL 23 (5): 1123-1132 Bird AJ; Blankman E; Stillman DJ; Eide DJ; Winge DR The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2 | 0 | 1 |
| 79 | 1 | 54 | 79 2004 EMBO JOURNAL 23 (19): 3735-3746 Chacinska A; Pfannschmidt S; Wiedemann N; Kozjak V; Szklarz LKS; et al. Essential role of Mia40 in import and assembly of mitochondrial intermembrane space proteins | 0 | 1 |
| 80 | 2 | 41 | 80 2004 EUKARYOTIC CELL 3 (2): 318-330 Gulshan K; Rovinsky SA; Moye-Rowley WS YBP1 and its homologue YBP2/YBH1 influence oxidative-stress tolerance by nonidentical mechanisms in Saccharomyces cerevisiae | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 81 | 1 | 78 | 81 2004 EUKARYOTIC CELL 3 (2): 339-347 Stebbins JL; Triezenberg SJ Identification, mutational analysis, and coactivator requirements of two distinct transcriptional activation domains of the Saccharomyces cerevisiae Hap4 protein | 0 | 1 |
| 82 | 1 | 118 | 82 2004 EXPERIMENTAL BIOLOGY AND MEDICINE 229 (8): 705-721 Kirmizis A; Farnham PJ Genomic approaches that aid in the identification of transcription factor target genes | 0 | 1 |
| 83 | 1 | 39 | 83 2004 FEMS MICROBIOLOGY LETTERS 231 (2): 153-158 Rodriguez-Valera F Environmental genomics, the big picture? | 0 | 5 |
| 84 | 2 | 22 | 84 2004 FEMS MICROBIOLOGY LETTERS 239 (1): 95-101 Sims AH; Dunn-Coleman NS; Robson GD; Oliver SG Glutamic protease distribution is limited to filamentous fungi | 0 | 0 |
| 85 | 1 | 41 | 85 2004 FEMS YEAST RESEARCH 4 (4-5): 521-525 Sweeney JY; Kuehne HA; Sniegowski PD Sympatric natural Saccharomyces cerevisiae and S-paradoxus populations have different thermal growth profiles | 0 | 0 |
| 86 | 1 | 50 | 86 2004 FEMS YEAST RESEARCH 4 (8): 821-832 Maciaszczyk E; Wysocki R; Golik P; Lazowska J; Ulaszewski S Arsenical resistance genes in Saccharomyces douglasii and other yeast species undergo rapid evolution involving genomic rearrangements and duplications | 0 | 0 |
| 87 | 2 | 32 | 87 2004 FEMS YEAST RESEARCH 5 (1): 73-79 Marinangeli P; Clementi F; Ciani M; Mannazzu I SED1 polymorphism within the genus Saccharomyces | 0 | 0 |
| 88 | 1 | 29 | 88 2004 FEMS YEAST RESEARCH 5 (3): 263-269 Naumova ES; Sukhotina NN; Naumov GI Molecular-genetic differentiation of the dairy yeast Kluyveromyces lactis and its closest wild relatives | 0 | 0 |
| 89 | 1 | 38 | 89 2004 FUNGAL GENETICS AND BIOLOGY 41 (3): 285-292 Nowrousian M; Wurtz C; Poggeler S; Kuck U Comparative sequence analysis of Sordaria macrospora and Neurospora crassa as a means to improve genome annotation | 1 | 1 |
| 90 | 1 | 57 | 90 2004 GENE 335: 1-17 Lafontaine I; Fischer G; Talla E; Dujon B Gene relics in the genorne of the yeast Saccharomyces cerevisiae | 0 | 1 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 91 | 1 | 57 | 91 2004 GENES & DEVELOPMENT 18 (9): 981-991 Wilmes GM; Archambault V; Austin RJ; Jacobson MD; Bell SP; et al. Interaction of the S-phase cyclin Clb5 with an 'RXL' docking sequence in the initiator protein Orc6 provides an origin-localized replication control switch | 1 | 9 |
| 92 | 1 | 38 | 92 2004 GENETICAL RESEARCH 83 (3): 177-188 Honeycutt E; Gibson G Use of regression methods to identify motifs that modulate germline transcription in Drosophila melanogaster | 0 | 1 |
| 93 | 1 | 56 | 93 2004 GENETICS 166 (4): 1727-1739 Abdel-Sater F; Iraqui I; Urrestarazu A; Andre B The external amino acid signaling pathway promotes activation of Stp1 and Uga35/Dal81 transcription factors for induction of the AGP1 gene in Saccharomyces cerevisiae | 0 | 2 |
| 94 | 1 | 64 | 94 2004 GENETICS 167 (1): 65-75 Williams EH; Perez-Martinez X; Fox TD MrpL36p, a highly diverged L31 ribosomal protein homolog with additional functional domains in Saccharomyces cerevisiae mitochondria | 1 | 1 |
| 95 | 1 | 60 | 95 2004 GENETICS 168 (1): 253-264 Gonzalez J; Casals F; Ruiz A Duplicative and conservative transpositions of Larval serum protein 1 genes in the genus Drosophila | 0 | 0 |
| 96 | 1 | 91 | 96 2004 GENETICS 168 (4): 2245-2260 Qin H; Wu WB; Comeron JM; Kreitman M; Li WH Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes | 0 | 0 |
| 97 | 1 | 38 | 97 2004 GENOME BIOLOGY 5 (1): Art. No. R2 Hurowitz EH; Brown PO Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae | 0 | 0 |
| 98 | 1 | 125 | 98 2004 GENOME BIOLOGY 5 (1): Art. No. 201 Bulyk ML Computational prediction of transcription-factor binding site locations | 0 | 1 |
| 99 | 1 | 133 | 99 2004 GENOME BIOLOGY 5 (2): Art. No. R7 Koonin EV; Fedorova ND; Jackson JD; Jacobs AR; Krylov DM; et al. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes | 0 | 21 |
| 100 | 2 | 15 | 100 2004 GENOME BIOLOGY 5 (2): Art. No. 206 Scannell DR; Wolfe K Rewiring the transcriptional regulatory circuits of cells | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 101 | 1 | 84 | 101 2004 GENOME BIOLOGY 5 (4): Art. No. R22 Breier AM; Chatterji S; Cozzarelli NR Prediction of Saccharomyces cerevisiae replication origins | 0 | 7 |
| 102 | 2 | 36 | 102 2004 GENOME BIOLOGY 5 (4): Art. No. R23 Bailey JA; Baertsch R; Kent WJ; Haussler D; Eichler EE Hotspots of mammalian chromosomal evolution | 0 | 17 |
| 103 | 1 | 54 | 103 2004 GENOME BIOLOGY 5 (5): Art. No. R33 Simonis N; van Helden J; Cohen GN; Wodak SJ Transcriptional regulation of protein complexes in yeast | 0 | 2 |
| 104 | 1 | 58 | 104 2004 GENOME BIOLOGY 5 (9): Art. No. R62 Bernstein BE; Liu CL; Humphrey EL; Perlstein EO; Schreiber SL Global nucleosome occupancy in yeast | 0 | 4 |
| 105 | 1 | 78 | 105 2004 GENOME BIOLOGY 5 (12): Art. No. R95 Haugen AC; Kelley R; Collins JB; Tucker CJ; Deng CC; et al. Integrating phenotypic and expression profiles to map arsenic-response networks | 0 | 0 |
| 106 | 2 | 51 | 106 2004 GENOME BIOLOGY 5 (12): Art. No. R98 Moses AM; Chiang DY; Pollard DA; Iyer VN; Eisen MB MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model | 0 | 0 |
| 107 | 1 | 35 | 107 2004 GENOME RESEARCH 14 (1): 99-108 Pritsker M; Liu YC; Beer MA; Tavazoie S Whole-genome discovery of transcription factor binding sites by network-level conservation | 5 | 9 |
| 108 | 1 | 32 | 108 2004 GENOME RESEARCH 14 (3): 451-458 Liu YY; Liu XS; Wei LP; Altman RB; Batzoglou S Eukaryotic regulatory element conservation analysis and identification using comparative genomics | 1 | 6 |
| 109 | 2 | 36 | 109 2004 GENOME RESEARCH 14 (4): 493-506 Tuzun E; Bailey JA; Eichler EE Recent segmental duplications in the working draft assembly of the brown Norway rat | 1 | 12 |
| 110 | 1 | 22 | 110 2004 GENOME RESEARCH 14 (4): 672-678 Kalafus KJ; Jackson AR; Milosavljevic A Pash: Efficient genome-scale sequence anchoring by positional hashing | 0 | 3 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 111 | 1 | 26 | 111 2004 GENOME RESEARCH 14 (4): 685-692 Brudno M; Poliakov A; Salamov A; Cooper GM; Sidow A; et al. Automated whole-genome multiple alignment of rat, mouse, and human | 0 | 5 |
| 112 | 1 | 15 | 112 2004 GENOME RESEARCH 14 (4): 716-720 Chakrabarti K; Pachter L Visualization of multiple genome annotations and alignments with the K-BROWSER | 0 | 4 |
| 113 | 1 | 17 | 113 2004 GENOME RESEARCH 14 (5): 829-834 Tanay A; Gat-Viks I; Shamir R A global view of the selection forces in the evolution of yeast cis-regulation | 1 | 1 |
| 114 | 2 | 59 | 114 2004 GENOME RESEARCH 14 (6): 1043-1051 Edwards-Ingram LC; Gent ME; Hoyle DC; Hayes A; Stateva LI; et al. Comparative genomic hybridization provides new insights into the molecular taxonomy of the Saccharomyces sensu stricto complex | 0 | 0 |
| 115 | 3 | 57 | 115 2004 GENOME RESEARCH 14 (10B): 2010-2014 Hill DE; Brasch MA; del Campo AA; Doucette-Stamm L; Garrels JI; et al. Academia-industry collaboration: An integral element for building "omic" resources | 0 | 0 |
| 116 | 1 | 33 | 116 2004 GENOME RESEARCH 14 (12): 2448-2456 Johnson DS; Davidson B; Brown CD; Smith WC; Sidow A Noncoding regulatory sequences of Gona exhibit strong correspondence between evolutionary constraint and functional importance | 0 | 0 |
| 117 | 1 | 50 | 117 2004 GENOMICS 84 (6): 929-940 Bina M; Wyss P; Ren WH; Szpankowski W; Thomas E; et al. Exploring the characteristics of sequence elements in proximal promoters of human genes | 0 | 0 |
| 118 | 4 | 196 | 118 2004 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37 (1): 93-106 Castrillo JO; Oliver SG Yeast as a touchstone in post-genomic research: Strategies for integrative analysis in functional genomics | 1 | 7 |
| 119 | 1 | 39 | 119 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (2): 1191-1196 Sullivan M; Hornig NCD; Porstmann T; Uhlmann F Studies on substrate recognition by the budding yeast separase | 0 | 2 |
| 120 | 1 | 34 | 120 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (6): 4322-4329 Davis-Kaplan SR; Ward DM; Shiflett SL; Kaplan J Genome-wide analysis of iron-dependent growth reveals a novel yeast gene required for vacuolar acidification | 1 | 3 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 121 | 1 | 45 | 121 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (16): 15728-15733 Ellis TP; Helfenbein KG; Tzagoloff A; Dieckmann CL Aep3p stabilizes the mitochondrial bicistronic mRNA encoding subunits 6 and 8 of the H+-translocating ATP synthase of Saccharomyces cerevisiae | 0 | 4 |
| 122 | 2 | 30 | 122 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (17): 17361-17365 Sambade M; Kane PM The yeast vacuolar proton-translocating ATPase contains a subunit homologous to the Manduca sexta and bovine e subunits that is essential for function | 0 | 2 |
| 123 | 2 | 59 | 123 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (48): 50243-50249 Burri L; Vascotto K; Fredersdorf S; Tiedt R; Hall MN; et al. Zim17, a novel zinc finger protein essential for protein import into mitochondria | 0 | 2 |
| 124 | 1 | 17 | 124 2004 JOURNAL OF BIOSCIENCE AND BIOENGINEERING 97 (1): 14-18 Miyashita K; Sakamoto K; Kitagaki H; Iwashita K; Ito K; et al. Cloning and analysis of the AWA1 gene of a nonfoaming mutant of a sake yeast | 0 | 1 |
| 125 | 1 | 61 | 125 2004 JOURNAL OF CLINICAL MICROBIOLOGY 42 (12): 5757-5766 Fournier PE; Zhu Y; Ogata H; Raoult D Use of highly variable intergenic spacer sequences for multispacer typing of Rickettsia conorii strains | 0 | 0 |
| 126 | 1 | 53 | 126 2004 JOURNAL OF COMPUTATIONAL BIOLOGY 11 (2-3): 319-355 Kellis M; Patterson N; Birren B; Berger B; Lander ES Methods in comparative genomics: Genome correspondence, gene identification and regulatory motif discovery | 0 | 0 |
| 127 | 1 | 28 | 127 2004 JOURNAL OF COMPUTATIONAL BIOLOGY 11 (2-3): 357-375 Tanay A; Shamir R Multilevel modeling and inference of transcription regulation | 0 | 0 |
| 128 | 2 | 62 | 128 2004 JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 302B (4): 392-411 Evangelisti AM; Wagner A Molecular evolution in the yeast transcriptional regulation network | 0 | 2 |
| 129 | 1 | 44 | 129 2004 JOURNAL OF MOLECULAR BIOLOGY 342 (1): 19-30 Washietl S; Hofacker IL Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics | 1 | 1 |
| 130 | 1 | 48 | 130 2004 JOURNAL OF MOLECULAR EVOLUTION 58 (2): 203-211 Hahn MW; Conant GC; Wagner A Molecular evolution in large genetic networks: Does connectivity equal constraint? | 1 | 8 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 131 | 1 | 23 | 131 2004 JOURNAL OF NUTRITION 134 (4): 962S-967S Ward RE; German JB Understanding milk's bioactive components: A goal for the Genomics toolbox | 0 | 1 |
| 132 | 1 | 80 | 132 2004 JOURNAL OF PROTEOME RESEARCH 3 (2): 179-196 Weston AD; Hood L Systems biology, proteomics, and the future of health care: Toward predictive, preventative, and personalized medicine | 0 | 8 |
| 133 | 2 | 69 | 133 2004 MOLECULAR & CELLULAR PROTEOMICS 3 (3): 209-225 Baxter SM; Rosenblum JS; Knutson S; Nelson MR; Montimurro JS; et al. Synergistic computational and experimental proteomics approaches for more accurate detection of active serine hydrolases in yeast | 0 | 2 |
| 134 | 1 | 38 | 134 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (1): 135-143 Hess D; Liu BS; Roan NR; Sternglanz R; Winston F Spt10-dependent transcriptional activation in Saccharomyces cerevisiae requires both the Spt10 acetyltransferase domain and Spt21 | 0 | 1 |
| 135 | 2 | 40 | 135 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (10): 4118-4127 Moqtaderi Z; Struhl K Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes | 0 | 7 |
| 136 | 1 | 38 | 136 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (17): 7503-7513 Andreasson C; Ljungdahl PO The N-terminal regulatory domain of Stp1p is modular and, fused to an artificial transcription factor, confers full Ssy1p-Ptr3p-Ssy5p sensor control | 0 | 1 |
| 137 | 2 | 63 | 137 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (17): 7720-7736 Chappell AS; Lundblad V Structural elements required for association of the Saccharomyces cerevisiae telomerase RNA with the Est2 reverse transcriptase | 0 | 2 |
| 138 | 1 | 33 | 138 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (8): 1548-1556 Tang H; Wyckoff GJ; Lu J; Wu CI A universal evolutionary index for amino acid changes | 0 | 0 |
| 139 | 1 | 70 | 139 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (12): 2210-2231 Premzl M; Gready JE; Jermiin LS; Simonic T; Graves JAM Evolution of vertebrate genes related to prion and Shadoo proteins - Clues from comparative genomic analysis | 0 | 1 |
| 140 | 2 | 58 | 140 2004 MOLECULAR BIOLOGY OF THE CELL 15 (9): 4191-4202 Green SR; Johnson AD Promoter-dependent roles for the Srb10 cyclin-dependent kinase and the Hda1 deacetylase in Tup1-mediated repression in Saccharomyces cerevisiae | 0 | 1 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 141 | 3 | 44 | 141 2004 MOLECULAR CELL 15 (1): 5-15 Badis G; Saveanu C; Fromont-Racine M; Jacquier A Targeted mRNA degradation by deadenylation-independent decapping | 0 | 2 |
| 142 | 1 | 60 | 142 2004 MOLECULAR MICROBIOLOGY 52 (5): 1271-1280 Gardenour KR; Levy J; Lopes JM Identification of novel dominant INO2(c) mutants with an Opi(-) phenotype | 0 | 0 |
| 143 | 3 | 61 | 143 2004 MOLECULAR MICROBIOLOGY 53 (2): 381-389 Piskur J; Langkjaer RB Yeast genome sequencing: the power of comparative genomics | 1 | 1 |
| 144 | 1 | 83 | 144 2004 MOLECULAR PLANT PATHOLOGY 5 (6): 515-525 Goswami RS; Kistler HC Heading for disaster: Fusarium graminearum on cereal crops | 0 | 0 |
| 145 | 2 | 45 | 145 2004 NATURE 428 (6983): 617-624 Kellis M; Birren BW; Lander ES Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae | 14 | 57 |
| 146 | 1 | 30 | 146 2004 NATURE 429 (6991): 571-574 Martens JA; Laprade L; Winston F Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene | 1 | 14 |
| 147 | 3 | 10 | 147 2004 NATURE 430 (6995): 25-26 Goffeau A Evolutionary genomics - Seeing double | 0 | 0 |
| 148 | 3 | 34 | 148 2004 NATURE 430 (6995): 35-44 Dujon B; Sherman D; Fischer G; Durrens P; Casaregola S; et al. Genome evolution in yeasts | 7 | 24 |
| 149 | 2 | 30 | 149 2004 NATURE 431 (7004): 99-104 Harbison CT; Gordon DB; Lee TI; Rinaldi NJ; Macisaac KD; et al. Transcriptional regulatory code of a eukaryotic genome | 4 | 12 |
| 150 | 2 | 71 | 150 2004 NATURE 431 (7011): 931-945 Collins FS; Lander ES; Rogers J; Waterston RH Finishing the euchromatic sequence of the human genome | 0 | 22 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 151 | 2 | 49 | 151 2004 NATURE GENETICS 36 (12): 1331-1339 Mukherjee S; Berger MF; Jona G; Wang XS; Muzzey D; et al. Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays | 0 | 1 |
| 152 | 2 | 102 | 152 2004 NATURE REVIEWS GENETICS 5 (3): 190-201 Steinmetz LM; Davis RW Maximizing the potential of functional genomics | 0 | 9 |
| 153 | 2 | 86 | 153 2004 NATURE REVIEWS GENETICS 5 (6): 456-465 Boffelli D; Nobrega MA; Rubin EM Comparative genomics at the vertebrate extremes | 1 | 18 |
| 154 | 2 | 3 | 154 2004 NATURE REVIEWS MICROBIOLOGY 2 (11): 856-857 Pain A; Bentley S; Parkhill J Eukaryotes: not beyond compare | 0 | 0 |
| 155 | 1 | 133 | 155 2004 NATURWISSENSCHAFTEN 91 (9): 405-421 Haubold B; Wiehe T Comparative genomics: methods and applications | 0 | 1 |
| 156 | 1 | 10 | 156 2004 NUCLEIC ACIDS RESEARCH 32: D311-D314 Christie KR; Weng S; Balakrishnan R; Costanzo MC; Dolinski K; et al. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms | 0 | 31 |
| 157 | 1 | 14 | 157 2004 NUCLEIC ACIDS RESEARCH 32: D315-D318 Sherman D; Durrens P; Beyne E; Nikolski M; Souciet JL Genolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts | 0 | 7 |
| 158 | 1 | 36 | 158 2004 NUCLEIC ACIDS RESEARCH 32 (2): 407-414 Jeong HS; Backlund PS; Chen HC; Karavanov AA; Crouch RJ RNase H2 of Saccharomyces cerevisiae is a complex of three proteins | 0 | 2 |
| 159 | 1 | 60 | 159 2004 NUCLEIC ACIDS RESEARCH 32 (5): Art. No. e51 Nagpal S; Karaman MW; Timmerman MM; Ho VV; Pike BL; et al. Improving the sensitivity and specificity of gene expression analysis in highly related organisms through the use of electronic masks | 0 | 4 |
| 160 | 1 | 60 | 160 2004 NUCLEIC ACIDS RESEARCH 32 (5): 1774-1782 Shabalina SA; Ogurtsov AY; Rogozin IB; Koonin EV; Lipman DJ Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals | 0 | 2 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 161 | 1 | 49 | 161 2004 NUCLEIC ACIDS RESEARCH 32 (7): 2069-2078 Leh-Louis V; Wirth B; Despons L; Wain-Hobson S; Potier S; et al. Differential evolution of the Saccharomyces cerevisiae DUP240 paralogs and implication of recombination in phylogeny | 0 | 1 |
| 162 | 1 | 50 | 162 2004 NUCLEIC ACIDS RESEARCH 32 (8): 2529-2540 Dahan O; Kupiec M The Saccharomyces cerevisiae gene CDC40/PRP17 controls cell cycle progression through splicing of the ANC1 gene | 0 | 3 |
| 163 | 1 | 54 | 163 2004 NUCLEIC ACIDS RESEARCH 32 (9): 2889-2900 Kreiman G Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes | 0 | 0 |
| 164 | 2 | 50 | 164 2004 NUCLEIC ACIDS RESEARCH 32 (20): 6038-6046 Glockner G; Lehmann R; Romualdi A; Pradella S; Schulte-Spechtel U; et al. Comparative analysis of the Borrelia garinii genome | 0 | 1 |
| 165 | 1 | 55 | 165 2004 NUCLEIC ACIDS RESEARCH 32 (22): 6469-6478 Mathias JR; Hanlon SE; O'Flanagan RA; Sengupta AM; Vershon AK Repression of the yeast HO gene by the MAT alpha 2 and MATa1 homeodomain proteins | 0 | 0 |
| 166 | 1 | 156 | 166 2004 PEPTIDES 25 (9): 1465-1476 Bardwell L A walk-through of the yeast mating pheromone response pathway | 1 | 4 |
| 167 | 1 | 27 | 167 2004 PLANT JOURNAL 37 (6): 897-905 Kuromori T; Hirayama T; Kiyosue Y; Takabe H; Mizukado S; et al. A collection of 11,800 single-copy Ds transposon insertion lines in Arabidopsis | 1 | 9 |
| 168 | 1 | 63 | 168 2004 PLOS BIOLOGY 2 (8): 1208-1223 Patil CK; Li H; Walter P Gcn4p and novel upstream activating sequences regulate targets of the unfolded protein response | 0 | 0 |
| 169 | 3 | 124 | 169 2004 PLOS BIOLOGY 2 (12): 2202-2219 Gasch AP; Moses AM; Chiang DY; Fraser HB; Berardini M; et al. Conservation and evolution of cis-regulatory systems in ascomycete fungi | 0 | 0 |
| 170 | 1 | 50 | 170 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (2): 434-439 Inada M; Guthrie C Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs | 0 | 7 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 171 | 1 | 41 | 171 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (5): 1200-1205 Klevecz RR; Bolen J; Forrest G; Murray DB A genomewide oscillation in transcription gates DNA replication and cell cycle | 0 | 11 |
| 172 | 1 | 35 | 172 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (17): 6570-6575 Mootha VK; Handschin C; Arlow D; Xie XH; St Pierre J; et al. Err alpha and Gabpa/b specify PGC-1 alpha-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle | 1 | 14 |
| 173 | 2 | 38 | 173 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (24): 9003-9008 Kiontke K; Gavin NP; Raynes Y; Roehrig C; Piano F; et al. Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss | 0 | 6 |
| 174 | 1 | 35 | 174 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (24): 9033-9038 Fraser HB; Hirsh AE; Wall DP; Eisen MB Coevolution of gene expression among interacting proteins | 0 | 5 |
| 175 | 2 | 33 | 175 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (27): 10024-10029 Zappulla DC; Cech TR Yeast telomerase RNA: A flexible scaffold for protein subunits | 0 | 4 |
| 176 | 1 | 44 | 176 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (33): 12114-12119 Zhou Q; Wong WH CisModule: De novo discovery of' cis-regulatory modules by hierarchical mixture modeling | 0 | 0 |
| 177 | 4 | 45 | 177 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (39): 14144-14149 Hittinger CT; Rokas A; Carroll SB Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts | 1 | 2 |
| 178 | 1 | 68 | 178 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (39): 14150-14155 Qiu WG; Schutzer SE; Bruno JF; Attie O; Yun X; et al. Genetic exchange and plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing | 0 | 4 |
| 179 | 1 | 29 | 179 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (46): 16234-16239 Das D; Banerjee N; Zhang MQ Interacting models of cooperative gene regulation | 0 | 0 |
| 180 | 1 | 20 | 180 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (49): 17156-17161 Iwama H; Gojobori T Highly conserved upstream sequences for transcription factor genes and implications for the regulatory network | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 181 | 1 | 38 | 181 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (50): 17422-17427 Sidoux-Walter F; Pettersson N; Hohmann S The Saccharomyces cerevisiae aquaporin Aqy1 is involved in sporulation | 0 | 0 |
| 182 | 1 | 31 | 182 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (52): 18069-18074 Galgoczy DJ; Cassidy-Stone A; Llinas M; O'Rourke SM; Herskowitz I; et al. Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae | 0 | 1 |
| 183 | 1 | 78 | 183 2004 PROTEOMICS 4 (6): 1712-1726 Southan C Has the yo-yo stopped? - An assessment of human protein-coding gene number | 0 | 4 |
| 184 | 1 | 32 | 184 2004 RESEARCH IN MICROBIOLOGY 155 (4): 217-223 Zeyl C Capturing the adaptive mutation in yeast | 0 | 0 |
| 185 | 1 | 84 | 185 2004 RESEARCH IN MICROBIOLOGY 155 (5): 301-310 Korona R Experimental studies of deleterious mutation in Saccharomyces cerevisiae | 0 | 0 |
| 186 | 1 | 51 | 186 2004 RNA-A PUBLICATION OF THE RNA SOCIETY 10 (1): 75-89 Van Nues RW; Brown JD Saccharomyces SRP RNA secondary structures: A conserved S-domain and extended Alu-domain | 0 | 1 |
| 187 | 2 | 37 | 187 2004 SCIENCE 304 (5675): 1321-1325 Bejerano G; Pheasant M; Makunin I; Stephen S; Kent WJ; et al. Ultraconserved elements in the human genome | 4 | 30 |
| 188 | 3 | 26 | 188 2004 SCIENCE 306 (5700): 1367-1370 Gao LZ; Innan H Very low gene duplication rate in the yeast genome | 0 | 0 |
| 189 | 1 | 70 | 189 2004 TRENDS IN ECOLOGY & EVOLUTION 19 (1): 32-38 McGrath CL; Katz LA Genome diversity in microbial eukaryotes | 0 | 2 |
| 190 | 2 | 36 | 190 2004 TRENDS IN GENETICS 20 (9): 403-407 Zhang ZQ; Gu JY; Gu X How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution? | 0 | 2 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 191 | 1 | 32 | 191 2004 YEAST 21 (6): 519-530 de Sousa HR; Spencer-Martins I; Goncalves P Differential regulation by glucose and fructose of a gene encoding a specific fructose/H+ symporter in Saccharomyces sensu stricto yeasts | 0 | 1 |
| 192 | 1 | 18 | 192 2004 YEAST 21 (12): 1021-1023 Doherty K; Pramanik A; Pride L; Lukose J; Moore CW Expression of the expanded YFL007w ORF and assignment of the gene name BLM10 | 0 | 0 |
| 193 | 2 | 31 | 193 2004 YEAST 21 (14): 1195-1203 Talarek N; Louis EJ; Cullin C; Aigle M Developing methods and strains for genetic studies in the Saccharomyces bayanus var. uvarum species | 0 | 0 |
| 194 | 1 | 20 | 194 2005 BIOINFORMATICS 21 (4): 423-429 Kasturi J; Acharya R Clustering of diverse genomic data using information fusion | 0 | 0 |
| 195 | 1 | 24 | 195 2005 BIOINFORMATICS 21 (7): 1172-1179 Kloster M; Tang C; Wingreen NS Finding regulatory modules through large-scale gene-expression data analysis | 0 | 0 |
| 196 | 1 | 50 | 196 2005 BIOTECHNOLOGY AND BIOENGINEERING 89 (1): 53-77 Wei HR; Kaznessis Y Inferring gene regulatory relationships by combining target-target pattern recognition and regulator-specific motif examination | 0 | 0 |
| 197 | 5 | 40 | 197 2005 CELL CYCLE 4 (1): 125-130 Archambault V; Buchler NE; Wilmes GM; Jacobson MD; Cross FR Two-faced Cyclins with eyes on the targets | 0 | 1 |
| 198 | 3 | 21 | 198 2005 COMPARATIVE AND FUNCTIONAL GENOMICS 6 (1-2): 2-16 Howson R; Huh WK; Ghaemmaghami S; Falvo JV; Bower K; et al. Construction, verification and experimental use of two epitope-tagged collections budding yeast strains | 0 | 0 |
| 199 | 1 | 28 | 199 2005 CURRENT BIOLOGY 15 (4): 347-352 McCarroll SA; Li H; Bargmann CI Identification of transcriptional regulatory elements in chemosensory receptor genes by probabilistic segmentation | 0 | 0 |
| 200 | 2 | 68 | 200 2005 EUKARYOTIC CELL 4 (2): 337-345 Williams EH; Bsat N; Bonnefoy N; Butler CA; Fox TD Alteration of a novel dispensable mitochondrial ribosomal small-subunit protein, Rsm28p, allows translation of defective COX2 mRNAs | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 201 | 2 | 63 | 201 2005 FEBS LETTERS 579 (8): 1859-1866 Schlitt T; Brazma A Modelling gene networks at different organisational levels | 0 | 0 |
| 202 | 2 | 34 | 202 2005 FEMS YEAST RESEARCH 5 (4-5): 471-483 Nguyen HV; Gaillardin C Evolutionary relationships between the former species Saccharomyces uvarum and the hybrids Saccharomyces bayanus and Saccharomyces pastorianus; reinstatement of Saccharomyces uvarum (Beijerinck) as a distinct species | 0 | 0 |
| 203 | 1 | 54 | 203 2005 GENOME BIOLOGY 6 (2): Art. No. R11 Tripoli G; D'Elia D; Barsanti P; Caggese C Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae | 0 | 0 |
| 204 | 2 | 91 | 204 2005 GENOME BIOLOGY 6 (2): Art. No. R18 Elemento O; Tavazoie S Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach | 0 | 0 |
| 205 | 1 | 94 | 205 2005 GENOME RESEARCH 15 (1): 1-18 Richards S; Liu Y; Bettencourt BR; Hradecky P; Letovsky S; et al. Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution | 0 | 2 |
| 206 | 4 | 27 | 206 2005 GENOME RESEARCH 15 (2): 205-213 Chin CS; Chuang JH; Li H Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence | 0 | 0 |
| 207 | 2 | 69 | 207 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (1): 437-447 Tai SL; Boer VM; Daran-Lapujade P; Walsh MC; de Winde JH; et al. Two-dimensional transcriptome analysis in chemostat cultures - Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae | 0 | 0 |
| 208 | 3 | 52 | 208 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (7): 5169-5177 Novoseler M; Hershkovits G; Katcoff DJ Functional domains of the yeast chromatin protein Sin1p/Spt2p can bind four-way junction and crossing DNA structures | 0 | 0 |
| 209 | 1 | 52 | 209 2005 JOURNAL OF CELL BIOLOGY 168 (1): 103-115 Dimmer KS; Jakobs S; Vogel F; Altmann K; Westermann B Mdm31 and Mdm32 are inner membrane proteins required for maintenance of mitochondrial shape and stability of mitochondrial DNA nucleoids in yeast | 0 | 0 |
| 210 | 1 | 28 | 210 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (1): 174-177 Hirsh AE; Fraser HB; Wall DP Adjusting for selection on synonymous sites in estimates of evolutionary distance | 0 | 1 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 211 | 1 | 69 | 211 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (3): 607-619 Macdonald SJ; Long AD Identifying signatures of selection at the Enhancer of split neurogenic gene complex in Drosophila | 0 | 0 |
| 212 | 1 | 28 | 212 2005 MOLECULAR ECOLOGY 14 (2): 415-424 Kosman E; Leonard KJ Similarity coefficients for molecular markers in studies of genetic relationships between individuals for haploid, diploid, and polyploid species | 0 | 0 |
| 213 | 3 | 37 | 213 2005 NATURE 434 (7031): 338-345 Xie XH; Lu J; Kulbokas EJ; Golub TR; Mootha V; et al. Systematic discovery of regulatory motifs in human promoters and 3 ' UTRs by comparison of several mammals | 0 | 0 |
| 214 | 4 | 30 | 214 2005 NATURE GENETICS 37 (3): 295-299 Kafri R; Bar-Even A; Pilpel Y Transcription control reprogramming in genetic backup circuits | 0 | 1 |
| 215 | 1 | 27 | 215 2005 NATURE METHODS 2 (1): 47-53 Kim JW; Bhinge AA; Morgan XC; Iyer VR Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment | 0 | 0 |
| 216 | 3 | 25 | 216 2005 NUCLEIC ACIDS RESEARCH 33: D348-D352 Hermida L; Brachat S; Voegeli S; Philippsen P; Primig M The Ashbya Genome Database (AGD) - a tool for the yeast community and genome biologists | 0 | 0 |
| 217 | 4 | 31 | 217 2005 NUCLEIC ACIDS RESEARCH 33: D364-D368 Guldener U; Munsterkotter M; Kastenmuller G; Strack N; van Helden J; et al. CYGD: the comprehensive Yeast Genome Database | 0 | 0 |
| 218 | 2 | 9 | 218 2005 NUCLEIC ACIDS RESEARCH 33: D374-D377 Balakrishnan R; Christie KR; Costanzo MC; Dolinski K; Dwight SS; et al. Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD) | 0 | 0 |
| 219 | 2 | 28 | 219 2005 NUCLEIC ACIDS RESEARCH 33 (1): 162-170 Ye L; Huang XQ MAP2: multiple alignment of syntenic genomic sequences | 0 | 0 |
| 220 | 3 | 160 | 220 2005 PEPTIDES 26 (2): 337-+ Bardwell L A walk-through of the yeast mating pheromone response pathway (vol 25, pg 1465, 2004) | 0 | 0 |
| # | LCR | NCR | Nodes / Date / Journal / Authors | LCS | GCS |
| 221 | 3 | 30 | 221 2005 PLOS BIOLOGY 3 (1): 95-102 Eddy SR A model of the statistical power of comparative genome sequence analysis | 0 | 1 |
| 222 | 1 | 37 | 222 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (4): 1092-1097 Gu ZL; David L; Petrov D; Jones T; Davis RW; et al. Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae | 0 | 0 |
| 223 | 2 | 45 | 223 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (5): 1572-1577 Brem RB; Kruglyak L The landscape of genetic complexity across 5,700 gene expression traits in yeast | 0 | 0 |
| 224 | 4 | 47 | 224 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (7): 2454-2459 Washietl S; Hofacker IL; Stadler PF Fast and reliable prediction of noncoding RNAs | 0 | 1 |
| 225 | 4 | 24 | 225 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (13): 4795-4800 Margulies EH; Vinson JP; Miller W; Jaffe DB; Lindblad-Toh K; et al. An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing | 0 | 0 |
| 226 | 1 | 49 | 226 2005 REPRODUCTION 129 (1): 1-7 Wrobel G; Primig M Mammalian male germ cells are fertile ground for expression profiling of sexual reproduction | 0 | 0 |
| 227 | 3 | 63 | 227 2005 YEAST 22 (2): 141-155 Tomishige N; Noda Y; Adachi H; Shimoi H; Yoda K SKG1, a suppressor gene of synthetic lethality of kex2 Delta gas1 Delta mutations, encodes a novel membrane protein that affects cell wall composition | 0 | 0 |
| 228 | 1 | 48 | 228 2005 YEAST 22 (3): 177-192 Liti G; Peruffo A; James SA; Roberts IN; Louis EJ Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex | 0 | 0 |
Generated by: HistCite 2005.04.07