Missing Links? Citation Matrix Graphs Glossary  HistCite Guide  About
Mon Apr 18 11:30:14 2005

Sequencing and comparison of yeast species to identify genes and regulatory elements
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES
NATURE 423 (6937): 241-254 MAY 15 2003
and the citing papers.

Nodes: 228, Authors: 979, Journals: 81, Outer References: 7806, Words: 937
Collection span: 2003 - 2005
View: Overview. Sorted by LCS.
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
105027 2003 NATURE 423 (6937): 241-254
Kellis M; Patterson N; Endrizzi M; Birren B; Lander ES
Sequencing and comparison of yeast species to identify genes and regulatory elements
227227
222929 2003 NATURE 425 (6959): 737-741
Ghaemmaghami S; Huh W; Bower K; Howson RW; Belle A; et al.
Global analysis of protein expression in yeast
14138
3245145 2004 NATURE 428 (6983): 617-624
Kellis M; Birren BW; Lander ES
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
1457
424828 2003 NATURE 425 (6959): 686-691
Huh WK; Falvo JV; Gerke LC; Carroll AS; Howson RW; et al.
Global analysis of protein localization in budding yeast
13202
5334148 2004 NATURE 430 (6995): 35-44
Dujon B; Sherman D; Fischer G; Durrens P; Casaregola S; et al.
Genome evolution in yeasts
724
616714 2003 GENOME RESEARCH 13 (12): 2507-2518
Margulies EH; Blanchette M; Haussler D; Green ED
Identification and characterization of multi-species conserved sequences
639
715130 2003 NATURE 425 (6960): 798-804
Rokas A; Williams BL; King N; Carroll SB
Genome-scale approaches to resolving incongruence in molecular phylogenies
657
8135107 2004 GENOME RESEARCH 14 (1): 99-108
Pritsker M; Liu YC; Beer MA; Tavazoie S
Whole-genome discovery of transcription factor binding sites by network-level conservation
59
914032 2003 NATURE GENETICS 35 (1): 57-64
Yvert G; Brem RB; Whittle J; Akey JM; Foss E; et al.
Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
431
10230149 2004 NATURE 431 (7004): 99-104
Harbison CT; Gordon DB; Lee TI; Rinaldi NJ; Macisaac KD; et al.
Transcriptional regulatory code of a eukaryotic genome
412
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
11237187 2004 SCIENCE 304 (5675): 1321-1325
Bejerano G; Pheasant M; Makunin I; Stephen S; Kent WJ; et al.
Ultraconserved elements in the human genome
430
12111837 2003 PLOS BIOLOGY 1 (2): 166-+
Stein LD; Bao ZR; Blasiar D; Blumenthal T; Brent MR; et al.
The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics
323
131467 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13 (6): 604-610
Cooper GM; Sidow A
Genomic regulatory regions: insights from comparative sequence analysis
210
1416310 2003 EMBO JOURNAL 22 (18): 4738-4747
Harismendy O; Gendrel CG; Soularue P; Gidrol X; Sentenac A; et al.
Genome-wide location of yeast RNA polymerase III transcription machinery
210
1511026 2003 NATURE 423 (6937): 233-234
Salzberg SL
Genomics - Yeast rises again
22
1612441 2003 RNA-A PUBLICATION OF THE RNA SOCIETY 9 (11): 1323-1332
Seto AG; Umansky K; Tzfati Y; Zaug AJ; Blackburn EH; et al.
A template-proximal RNA paired element contributes to Saccharomyces cerevisiae telomerase activity
26
1716042 2003 SCIENCE 301 (5634): 793-797
Eichler EE; Sankoff D
Structural dynamics of eukaryotic chromosome evolution
239
1815845 2003 YEAST 20 (14): 1213-1226
Fernandez-Espinar MT; Barrio E; Querol A
Analysis of the genetic variability in the species of the Saccharomyces sensu stricto complex
24
1911560 2004 BRIEFINGS IN BIOINFORMATICS 5 (1): 9-22
Dwight SS; Balakrishnan R; Christie KR; Costanzo MC; Dolinski K; et al.
Saccharomyces genome database: Underlying principles and organisation
23
2015762 2004 CELL 116 (5): 699-709
Basehoar AD; Zanton SJ; Pugh BF
Identification and distinct regulation of yeast TATA box-containing genes
214
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
2146263 2004 CELL 118 (1): 31-44
Mnaimneh S; Davierwala AP; Haynes J; Moffat J; Peng WT; et al.
Exploration of essential gene functions via titratable promoter alleles
212
222732 2003 CELL 115 (4): 389-399
Tsong AE; Miller MG; Raisner RM; Johnson AD
Evolution of a combinatorial transcriptional circuit: A case study in yeasts
112
23110124 2003 MOLECULAR BIOLOGY OF THE CELL 14 (12): 4931-4946
Nekrasov VS; Smith MA; Peak-Chew S; Kilmartin JV
Interactions between centromere complexes in Saccharomyces cerevisiae
19
2435625 2003 MOLECULAR CELL 12 (6): 1353-1365
Hazbun TR; Malmstrom L; Anderson S; Graczyk BJ; Fox B; et al.
Assigning function to yeast proteins by integration of technologies
123
2517634 2003 NATURE REVIEWS MICROBIOLOGY 1 (2): 106-116
Johnson A
The biology of mating in Candida albicans
110
2613053 2004 BIOINFORMATICS 20 (15): 2370-2379
Simonis N; Wodak SJ; Cohen GN; van Helden J
Combining pattern discovery and discriminant analysis to predict gene co-regulation
11
2716072 2004 CURRENT OPINION IN BIOTECHNOLOGY 15 (1): 70-77
Herrgard MJ; Covert MW; Palsson BO
Reconstruction of microbial transcriptional regulatory networks
19
2814474 2004 CURRENT OPINION IN CHEMICAL BIOLOGY 8 (1): 20-25
Rual JF; Hill DE; Vidal M
ORFeome projects: gateway between genomics and omics
19
2913889 2004 FUNGAL GENETICS AND BIOLOGY 41 (3): 285-292
Nowrousian M; Wurtz C; Poggeler S; Kuck U
Comparative sequence analysis of Sordaria macrospora and Neurospora crassa as a means to improve genome annotation
11
3015791 2004 GENES & DEVELOPMENT 18 (9): 981-991
Wilmes GM; Archambault V; Austin RJ; Jacobson MD; Bell SP; et al.
Interaction of the S-phase cyclin Clb5 with an 'RXL' docking sequence in the initiator protein Orc6 provides an origin-localized replication control switch
19
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
3116494 2004 GENETICS 167 (1): 65-75
Williams EH; Perez-Martinez X; Fox TD
MrpL36p, a highly diverged L31 ribosomal protein homolog with additional functional domains in Saccharomyces cerevisiae mitochondria
11
32132108 2004 GENOME RESEARCH 14 (3): 451-458
Liu YY; Liu XS; Wei LP; Altman RB; Batzoglou S
Eukaryotic regulatory element conservation analysis and identification using comparative genomics
16
33236109 2004 GENOME RESEARCH 14 (4): 493-506
Tuzun E; Bailey JA; Eichler EE
Recent segmental duplications in the working draft assembly of the brown Norway rat
112
34117113 2004 GENOME RESEARCH 14 (5): 829-834
Tanay A; Gat-Viks I; Shamir R
A global view of the selection forces in the evolution of yeast cis-regulation
11
354196118 2004 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37 (1): 93-106
Castrillo JO; Oliver SG
Yeast as a touchstone in post-genomic research: Strategies for integrative analysis in functional genomics
17
36134120 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (6): 4322-4329
Davis-Kaplan SR; Ward DM; Shiflett SL; Kaplan J
Genome-wide analysis of iron-dependent growth reveals a novel yeast gene required for vacuolar acidification
13
37144129 2004 JOURNAL OF MOLECULAR BIOLOGY 342 (1): 19-30
Washietl S; Hofacker IL
Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics
11
38148130 2004 JOURNAL OF MOLECULAR EVOLUTION 58 (2): 203-211
Hahn MW; Conant GC; Wagner A
Molecular evolution in large genetic networks: Does connectivity equal constraint?
18
39361143 2004 MOLECULAR MICROBIOLOGY 53 (2): 381-389
Piskur J; Langkjaer RB
Yeast genome sequencing: the power of comparative genomics
11
40130146 2004 NATURE 429 (6991): 571-574
Martens JA; Laprade L; Winston F
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
114
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
41286153 2004 NATURE REVIEWS GENETICS 5 (6): 456-465
Boffelli D; Nobrega MA; Rubin EM
Comparative genomics at the vertebrate extremes
118
421156166 2004 PEPTIDES 25 (9): 1465-1476
Bardwell L
A walk-through of the yeast mating pheromone response pathway
14
43127167 2004 PLANT JOURNAL 37 (6): 897-905
Kuromori T; Hirayama T; Kiyosue Y; Takabe H; Mizukado S; et al.
A collection of 11,800 single-copy Ds transposon insertion lines in Arabidopsis
19
44135172 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (17): 6570-6575
Mootha VK; Handschin C; Arlow D; Xie XH; St Pierre J; et al.
Err alpha and Gabpa/b specify PGC-1 alpha-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle
114
45445177 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (39): 14144-14149
Hittinger CT; Rokas A; Carroll SB
Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts
12
461471 2003 BMC EVOLUTIONARY BIOLOGY 3: Art. No. 19
Moses AM; Chiang DY; Kellis M; Lander ES; Eisen MB
Position specific variation in the rate of evolution in transcription factor binding sites
011
471693 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 217-225
Zhang MQ
Prediction, annotation, and analysis of human promoters
01
481644 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 345-357
Weston AD; Baliga NS; Bonneau R; Hood L
Systems approaches applied to the study of Saccharomyces cerevisiae and Halobacterium sp.
02
494965 2003 COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 68: 431-443
Jorgensen P; Breitkreutz BJ; Breitkreutz K; Stark C; Liu G; et al.
Harvesting the genome's bounty: Integrative genomics
00
501556 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13 (6): 583-587
Sankoff D
Rearrangements and chromosomal evolution
05
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
511618 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13 (6): 611-616
Li H; Wang W
Dissecting the transcription networks of a cell using computational genomics
03
521479 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13 (6): 623-628
Copley RR; Goodstadt L; Ponting C
Eukaryotic domain evolution inferred from genome comparisons
06
5315811 2003 EMBO JOURNAL 22 (21): 5951-5961
Perez-Martinez X; Broadley SA; Fox TD
Mss51p promotes mitochondrial Cox1p synthesis and interacts with newly synthesized Cox1p
02
5415012 2003 GENOME BIOLOGY 4 (7): Art. No. R43
Chiang DY; Moses AM; Kellis M; Lander ES; Eisen MB
Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts
012
5514413 2003 GENOME BIOLOGY 4 (12): Art. No. 122
Dubchak I; Frazer K
Multi-species sequence comparison: the next frontier in genome annotation
03
561515 2003 HEREDITY 91 (6): 533-534
Furlong RF; Yang ZH
Comparative genomics - Comparative genomics coming of age
00
5714516 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278 (42): 41519-41527
Oishi K; Miyazaki K; Kadota K; Kikuno R; Nagase T; et al.
Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes
014
5813517 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278 (52): 52641-52650
Lucau-Danila A; Delaveau T; Lelandais G; Devaux F; Jacq C
Competitive promoter occupancy by two yeast paralogous transcription factors controlling the multidrug resistance phenomenon
03
5918518 2003 JOURNAL OF GENERAL VIROLOGY 84: 2895-2908
Davison AJ; Benko M; Harrach B
Genetic content and evolution of adenoviruses
020
6016319 2003 JOURNAL OF MOLECULAR BIOLOGY 333 (1): 1-20
Giuliodori S; Percudani R; Braglia P; Ferrari R; Guffanti E; et al.
A composite upstream sequence motif potentiates tRNA gene transcription in yeast
01
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
6112720 2003 JOURNAL OF MOLECULAR BIOLOGY 333 (5): 885-892
Harrison PM; Carriero N; Liu Y; Gerstein M
A 'PolyORFomic' analysis of prokaryote genomes using disabled-homology filtering reveals conserved but undiscovered short ORFs
02
6211921 2003 JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY 6 (1): 19-28
De Hertogh B; Talla E; Tekaia F; Beyne E; Sherman D; et al.
Novel transporters from hemiascomycete yeasts
00
631422 2003 JOURNAL OF NEUROENDOCRINOLOGY 15 (10): 905-906
Hazlerigg D
You probably can't afford it, but can you afford to ignore it?
00
6417223 2003 MOLECULAR AND CELLULAR BIOLOGY 23 (18): 6564-6573
Chahwan C; Nakamura TM; Sivakumar S; Russell P; Rhind N
The fission yeast Rad32 (Mre11)-Rad50-Nbs1 complex is required for the S-phase DNA damage checkpoint
010
652831 2003 NATURE 426 (6968): 750-751
Dennis C
Genomics - Compare and contrast
00
661133 2003 NATURE REVIEWS GENETICS 4 (6): 404-404
Skipper M
Comparative genomics - Maximize your power
00
6711935 2003 NUCLEIC ACIDS RESEARCH 31 (16): Art. No. e94
Fukumura R; Takahashi H; Saito T; Tsutsumi Y; Fujimori A; et al.
A sensitive transcriptome analysis method that can detect unknown transcripts
02
6813336 2003 PLOS BIOLOGY 1 (2): 156-160
Hardison RC
Comparative genomics
01
6916638 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100 (23): 13134-13139
Famili I; Forster J; Nielson J; Palsson BO
Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network
016
7012539 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100 (26): 15661-15665
Yang J; Lusk R; Li WH
Organismal complexity, protein complexity, and gene duplicability
07
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
7114540 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100 (26): 15764-15769
Kushner DB; Lindenbach BD; Grdzelishvili VZ; Noueiry AO; Paul SM; et al.
Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus
05
7213243 2003 TRENDS IN GENETICS 19 (11): 603-607
Doak TG; Cavalcanti ARO; Stover NA; Dunn DM; Weiss R; et al.
Sequencing the Oxytricha trifallax macronuclear genome: a pilot project
03
7313544 2003 YEAST 20 (14): 1177-1188
Heyken WT; Wagner C; Wittmann J; Albrecht A; Schuller HJ
Negative regulation of phospholipid biosynthesis in Saccharomyces cerevisiae by a Candida albicans orthologue of OPII
00
7422446 2004 ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS 3240: 326-337
Sundararajan M; Brudno M; Small K; Sidow A; Batzoglou S
Chaining algorithms for alignment of draft sequence
00
7514947 2004 AMERICAN JOURNAL OF HUMAN GENETICS 75 (2): 294-304
Hammond CJ; Andrew T; Mak YT; Spector TD
A susceptibility locus for myopia in the normal population is linked to the PAX6 gene region on chromosome 11: A genomewide scan of dizygotic twins
04
7614048 2004 AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY 31 (2): S72-S75
[Anon]
Identifying regulatory networks - Lessons from yeast to humans
00
77319349 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 15-56
Miller W; Makova KD; Nekrutenko A; Hardison RC
Comparative genomics
02
78217350 2004 ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS 5: 443-477
Borevitz JO; Ecker JR
Plant genomics: The third wave
01
79315951 2004 BIOCHEMICAL JOURNAL 381: 1-12
Wei GH; Liu DP; Liang CC
Charting gene regulatory networks: strategies, challenges and perspectives
02
8012852 2004 BIOINFORMATICS 20 (13): 1993-2003
Ihmels J; Bergmann S; Barkai N
Defining transcription modules using large-scale gene expression data
03
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
8114954 2004 BIOINFORMATICS 20 (16): 2738-2750
Grad YH; Roth FP; Halfon MS; Church GM
Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura
00
8211855 2004 BMC BIOINFORMATICS 5: Art. No. 27
Bigelow HR; Wenick AS; Wong A; Hobert O
CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting
08
8312256 2004 BMC BIOINFORMATICS 5: Art. No. 57
Cora D; Di Cunto F; Provero P; Silengo L; Caselle M
Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs
03
8412857 2004 BMC BIOINFORMATICS 5: Art. No. 62
Conant GC; Wagner A
A fast algorithm for determining the best combination of local alignments to a query sequence
00
8523558 2004 BMC BIOINFORMATICS 5: Art. No. 170
Sinha S; Blanchette M; Tompa M
PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences
02
8614359 2004 BMC GENOMICS 5: Art. No. 59
Nagaraj VH; O'Flanagan RA; Bruning AR; Mathias JR; Vershon AK; et al.
Combined analysis of expression data and transcription factor binding sites in the yeast genome
03
87311361 2004 CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE 26 (1): 19-30
Hsiang T; Baillie DL
Recent progress, developments, and issues in comparative fungal genomics
01
8814964 2004 CELL 119 (7): 969-979
Martin DE; Soulard A; Hall MN
TOR regulates ribosomal protein gene expression via PKA and the forkhead transcription factor FHL1
01
8914565 2004 CELLULAR AND MOLECULAR LIFE SCIENCES 61 (10): 1208-1220
Creutz CE; Snyder SL; Schulz TA
Characterization of the yeast tricalbins: membrane-bound multi-C2-domain proteins that form complexes involved in membrane trafficking
00
90118466 2004 CELLULAR AND MOLECULAR LIFE SCIENCES 61 (13): 1615-1632
Hilt W
Ubiquitin-proteasome system - Targets of programmed destruction: a primer to regulatory proteolysis in yeast
00
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
9122067 2004 CURRENT BIOLOGY 14 (10): R392-R394
Wolfe K
Evolutionary genomics: Yeasts accelerate beyond BLAST
01
9211968 2004 CURRENT BIOLOGY 14 (14): R565-R567
Lustig AJ
Telomerase RNA: A flexible RNA scaffold for telomerase biosynthesis
00
9313769 2004 CURRENT GENETICS 45 (3): 121-128
Roth S; Kumme J; Schuller HJ
Transcriptional activators Cat8 and Sip4 discriminate between sequence variants of the carbon source-responsive promoter element in the yeast Saccharomyces cerevisiae
01
9414370 2004 CURRENT GENETICS 45 (6): 360-370
Bond U; Neal C; Donnelly D; James TC
Aneuploidy and copy number breakpoints in the genome of lager yeasts mapped by microarray hybridisation
00
95112771 2004 CURRENT MOLECULAR MEDICINE 4 (6): 563-576
Horn D
The molecular control of antigenic variation in Trypanosoma brucei
00
96411173 2004 CURRENT OPINION IN CELL BIOLOGY 16 (6): 602-613
Tyers M
Cell cycle goes global
00
9714075 2004 CURRENT OPINION IN MICROBIOLOGY 7 (4): 382-387
Llinas M; DeRisi JL
Pernicious plans revealed: Plasmodium falciparum genome wide expression analysis
00
9865376 2004 CURRENT OPINION IN MICROBIOLOGY 7 (5): 546-554
Hughes TR; Robinson MD; Mitsakakis N; Johnston M
The promise of functional genomics: completing the encyclopedia of a cell
01
9945377 2004 CURRENT OPINION IN MICROBIOLOGY 7 (6): 638-646
Chua G; Robinson MD; Morris Q; Hughes TR
Transcriptional networks: reverse-engineering gene regulation on a global scale
00
10014378 2004 EMBO JOURNAL 23 (5): 1123-1132
Bird AJ; Blankman E; Stillman DJ; Eide DJ; Winge DR
The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2
01
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
10115479 2004 EMBO JOURNAL 23 (19): 3735-3746
Chacinska A; Pfannschmidt S; Wiedemann N; Kozjak V; Szklarz LKS; et al.
Essential role of Mia40 in import and assembly of mitochondrial intermembrane space proteins
01
10224180 2004 EUKARYOTIC CELL 3 (2): 318-330
Gulshan K; Rovinsky SA; Moye-Rowley WS
YBP1 and its homologue YBP2/YBH1 influence oxidative-stress tolerance by nonidentical mechanisms in Saccharomyces cerevisiae
00
10317881 2004 EUKARYOTIC CELL 3 (2): 339-347
Stebbins JL; Triezenberg SJ
Identification, mutational analysis, and coactivator requirements of two distinct transcriptional activation domains of the Saccharomyces cerevisiae Hap4 protein
01
104111882 2004 EXPERIMENTAL BIOLOGY AND MEDICINE 229 (8): 705-721
Kirmizis A; Farnham PJ
Genomic approaches that aid in the identification of transcription factor target genes
01
10513983 2004 FEMS MICROBIOLOGY LETTERS 231 (2): 153-158
Rodriguez-Valera F
Environmental genomics, the big picture?
05
10622284 2004 FEMS MICROBIOLOGY LETTERS 239 (1): 95-101
Sims AH; Dunn-Coleman NS; Robson GD; Oliver SG
Glutamic protease distribution is limited to filamentous fungi
00
10714185 2004 FEMS YEAST RESEARCH 4 (4-5): 521-525
Sweeney JY; Kuehne HA; Sniegowski PD
Sympatric natural Saccharomyces cerevisiae and S-paradoxus populations have different thermal growth profiles
00
10815086 2004 FEMS YEAST RESEARCH 4 (8): 821-832
Maciaszczyk E; Wysocki R; Golik P; Lazowska J; Ulaszewski S
Arsenical resistance genes in Saccharomyces douglasii and other yeast species undergo rapid evolution involving genomic rearrangements and duplications
00
10923287 2004 FEMS YEAST RESEARCH 5 (1): 73-79
Marinangeli P; Clementi F; Ciani M; Mannazzu I
SED1 polymorphism within the genus Saccharomyces
00
11012988 2004 FEMS YEAST RESEARCH 5 (3): 263-269
Naumova ES; Sukhotina NN; Naumov GI
Molecular-genetic differentiation of the dairy yeast Kluyveromyces lactis and its closest wild relatives
00
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
11115790 2004 GENE 335: 1-17
Lafontaine I; Fischer G; Talla E; Dujon B
Gene relics in the genorne of the yeast Saccharomyces cerevisiae
01
11213892 2004 GENETICAL RESEARCH 83 (3): 177-188
Honeycutt E; Gibson G
Use of regression methods to identify motifs that modulate germline transcription in Drosophila melanogaster
01
11315693 2004 GENETICS 166 (4): 1727-1739
Abdel-Sater F; Iraqui I; Urrestarazu A; Andre B
The external amino acid signaling pathway promotes activation of Stp1 and Uga35/Dal81 transcription factors for induction of the AGP1 gene in Saccharomyces cerevisiae
02
11416095 2004 GENETICS 168 (1): 253-264
Gonzalez J; Casals F; Ruiz A
Duplicative and conservative transpositions of Larval serum protein 1 genes in the genus Drosophila
00
11519196 2004 GENETICS 168 (4): 2245-2260
Qin H; Wu WB; Comeron JM; Kreitman M; Li WH
Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes
00
11613897 2004 GENOME BIOLOGY 5 (1): Art. No. R2
Hurowitz EH; Brown PO
Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae
00
117112598 2004 GENOME BIOLOGY 5 (1): Art. No. 201
Bulyk ML
Computational prediction of transcription-factor binding site locations
01
118113399 2004 GENOME BIOLOGY 5 (2): Art. No. R7
Koonin EV; Fedorova ND; Jackson JD; Jacobs AR; Krylov DM; et al.
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
021
119215100 2004 GENOME BIOLOGY 5 (2): Art. No. 206
Scannell DR; Wolfe K
Rewiring the transcriptional regulatory circuits of cells
00
120184101 2004 GENOME BIOLOGY 5 (4): Art. No. R22
Breier AM; Chatterji S; Cozzarelli NR
Prediction of Saccharomyces cerevisiae replication origins
07
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
121236102 2004 GENOME BIOLOGY 5 (4): Art. No. R23
Bailey JA; Baertsch R; Kent WJ; Haussler D; Eichler EE
Hotspots of mammalian chromosomal evolution
017
122154103 2004 GENOME BIOLOGY 5 (5): Art. No. R33
Simonis N; van Helden J; Cohen GN; Wodak SJ
Transcriptional regulation of protein complexes in yeast
02
123158104 2004 GENOME BIOLOGY 5 (9): Art. No. R62
Bernstein BE; Liu CL; Humphrey EL; Perlstein EO; Schreiber SL
Global nucleosome occupancy in yeast
04
124178105 2004 GENOME BIOLOGY 5 (12): Art. No. R95
Haugen AC; Kelley R; Collins JB; Tucker CJ; Deng CC; et al.
Integrating phenotypic and expression profiles to map arsenic-response networks
00
125251106 2004 GENOME BIOLOGY 5 (12): Art. No. R98
Moses AM; Chiang DY; Pollard DA; Iyer VN; Eisen MB
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model
00
126122110 2004 GENOME RESEARCH 14 (4): 672-678
Kalafus KJ; Jackson AR; Milosavljevic A
Pash: Efficient genome-scale sequence anchoring by positional hashing
03
127126111 2004 GENOME RESEARCH 14 (4): 685-692
Brudno M; Poliakov A; Salamov A; Cooper GM; Sidow A; et al.
Automated whole-genome multiple alignment of rat, mouse, and human
05
128115112 2004 GENOME RESEARCH 14 (4): 716-720
Chakrabarti K; Pachter L
Visualization of multiple genome annotations and alignments with the K-BROWSER
04
129259114 2004 GENOME RESEARCH 14 (6): 1043-1051
Edwards-Ingram LC; Gent ME; Hoyle DC; Hayes A; Stateva LI; et al.
Comparative genomic hybridization provides new insights into the molecular taxonomy of the Saccharomyces sensu stricto complex
00
130357115 2004 GENOME RESEARCH 14 (10B): 2010-2014
Hill DE; Brasch MA; del Campo AA; Doucette-Stamm L; Garrels JI; et al.
Academia-industry collaboration: An integral element for building "omic" resources
00
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
131133116 2004 GENOME RESEARCH 14 (12): 2448-2456
Johnson DS; Davidson B; Brown CD; Smith WC; Sidow A
Noncoding regulatory sequences of Gona exhibit strong correspondence between evolutionary constraint and functional importance
00
132150117 2004 GENOMICS 84 (6): 929-940
Bina M; Wyss P; Ren WH; Szpankowski W; Thomas E; et al.
Exploring the characteristics of sequence elements in proximal promoters of human genes
00
133139119 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (2): 1191-1196
Sullivan M; Hornig NCD; Porstmann T; Uhlmann F
Studies on substrate recognition by the budding yeast separase
02
134145121 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (16): 15728-15733
Ellis TP; Helfenbein KG; Tzagoloff A; Dieckmann CL
Aep3p stabilizes the mitochondrial bicistronic mRNA encoding subunits 6 and 8 of the H+-translocating ATP synthase of Saccharomyces cerevisiae
04
135230122 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (17): 17361-17365
Sambade M; Kane PM
The yeast vacuolar proton-translocating ATPase contains a subunit homologous to the Manduca sexta and bovine e subunits that is essential for function
02
136259123 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279 (48): 50243-50249
Burri L; Vascotto K; Fredersdorf S; Tiedt R; Hall MN; et al.
Zim17, a novel zinc finger protein essential for protein import into mitochondria
02
137117124 2004 JOURNAL OF BIOSCIENCE AND BIOENGINEERING 97 (1): 14-18
Miyashita K; Sakamoto K; Kitagaki H; Iwashita K; Ito K; et al.
Cloning and analysis of the AWA1 gene of a nonfoaming mutant of a sake yeast
01
138161125 2004 JOURNAL OF CLINICAL MICROBIOLOGY 42 (12): 5757-5766
Fournier PE; Zhu Y; Ogata H; Raoult D
Use of highly variable intergenic spacer sequences for multispacer typing of Rickettsia conorii strains
00
139153126 2004 JOURNAL OF COMPUTATIONAL BIOLOGY 11 (2-3): 319-355
Kellis M; Patterson N; Birren B; Berger B; Lander ES
Methods in comparative genomics: Genome correspondence, gene identification and regulatory motif discovery
00
140128127 2004 JOURNAL OF COMPUTATIONAL BIOLOGY 11 (2-3): 357-375
Tanay A; Shamir R
Multilevel modeling and inference of transcription regulation
00
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
141262128 2004 JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 302B (4): 392-411
Evangelisti AM; Wagner A
Molecular evolution in the yeast transcriptional regulation network
02
142123131 2004 JOURNAL OF NUTRITION 134 (4): 962S-967S
Ward RE; German JB
Understanding milk's bioactive components: A goal for the Genomics toolbox
01
143180132 2004 JOURNAL OF PROTEOME RESEARCH 3 (2): 179-196
Weston AD; Hood L
Systems biology, proteomics, and the future of health care: Toward predictive, preventative, and personalized medicine
08
144269133 2004 MOLECULAR & CELLULAR PROTEOMICS 3 (3): 209-225
Baxter SM; Rosenblum JS; Knutson S; Nelson MR; Montimurro JS; et al.
Synergistic computational and experimental proteomics approaches for more accurate detection of active serine hydrolases in yeast
02
145138134 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (1): 135-143
Hess D; Liu BS; Roan NR; Sternglanz R; Winston F
Spt10-dependent transcriptional activation in Saccharomyces cerevisiae requires both the Spt10 acetyltransferase domain and Spt21
01
146240135 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (10): 4118-4127
Moqtaderi Z; Struhl K
Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes
07
147138136 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (17): 7503-7513
Andreasson C; Ljungdahl PO
The N-terminal regulatory domain of Stp1p is modular and, fused to an artificial transcription factor, confers full Ssy1p-Ptr3p-Ssy5p sensor control
01
148263137 2004 MOLECULAR AND CELLULAR BIOLOGY 24 (17): 7720-7736
Chappell AS; Lundblad V
Structural elements required for association of the Saccharomyces cerevisiae telomerase RNA with the Est2 reverse transcriptase
02
149133138 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (8): 1548-1556
Tang H; Wyckoff GJ; Lu J; Wu CI
A universal evolutionary index for amino acid changes
00
150170139 2004 MOLECULAR BIOLOGY AND EVOLUTION 21 (12): 2210-2231
Premzl M; Gready JE; Jermiin LS; Simonic T; Graves JAM
Evolution of vertebrate genes related to prion and Shadoo proteins - Clues from comparative genomic analysis
01
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
151258140 2004 MOLECULAR BIOLOGY OF THE CELL 15 (9): 4191-4202
Green SR; Johnson AD
Promoter-dependent roles for the Srb10 cyclin-dependent kinase and the Hda1 deacetylase in Tup1-mediated repression in Saccharomyces cerevisiae
01
152344141 2004 MOLECULAR CELL 15 (1): 5-15
Badis G; Saveanu C; Fromont-Racine M; Jacquier A
Targeted mRNA degradation by deadenylation-independent decapping
02
153160142 2004 MOLECULAR MICROBIOLOGY 52 (5): 1271-1280
Gardenour KR; Levy J; Lopes JM
Identification of novel dominant INO2(c) mutants with an Opi(-) phenotype
00
154183144 2004 MOLECULAR PLANT PATHOLOGY 5 (6): 515-525
Goswami RS; Kistler HC
Heading for disaster: Fusarium graminearum on cereal crops
00
155310147 2004 NATURE 430 (6995): 25-26
Goffeau A
Evolutionary genomics - Seeing double
00
156271150 2004 NATURE 431 (7011): 931-945
Collins FS; Lander ES; Rogers J; Waterston RH
Finishing the euchromatic sequence of the human genome
022
157249151 2004 NATURE GENETICS 36 (12): 1331-1339
Mukherjee S; Berger MF; Jona G; Wang XS; Muzzey D; et al.
Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
01
1582102152 2004 NATURE REVIEWS GENETICS 5 (3): 190-201
Steinmetz LM; Davis RW
Maximizing the potential of functional genomics
09
15923154 2004 NATURE REVIEWS MICROBIOLOGY 2 (11): 856-857
Pain A; Bentley S; Parkhill J
Eukaryotes: not beyond compare
00
1601133155 2004 NATURWISSENSCHAFTEN 91 (9): 405-421
Haubold B; Wiehe T
Comparative genomics: methods and applications
01
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
161110156 2004 NUCLEIC ACIDS RESEARCH 32: D311-D314
Christie KR; Weng S; Balakrishnan R; Costanzo MC; Dolinski K; et al.
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
031
162114157 2004 NUCLEIC ACIDS RESEARCH 32: D315-D318
Sherman D; Durrens P; Beyne E; Nikolski M; Souciet JL
Genolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts
07
163136158 2004 NUCLEIC ACIDS RESEARCH 32 (2): 407-414
Jeong HS; Backlund PS; Chen HC; Karavanov AA; Crouch RJ
RNase H2 of Saccharomyces cerevisiae is a complex of three proteins
02
164160159 2004 NUCLEIC ACIDS RESEARCH 32 (5): Art. No. e51
Nagpal S; Karaman MW; Timmerman MM; Ho VV; Pike BL; et al.
Improving the sensitivity and specificity of gene expression analysis in highly related organisms through the use of electronic masks
04
165160160 2004 NUCLEIC ACIDS RESEARCH 32 (5): 1774-1782
Shabalina SA; Ogurtsov AY; Rogozin IB; Koonin EV; Lipman DJ
Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals
02
166149161 2004 NUCLEIC ACIDS RESEARCH 32 (7): 2069-2078
Leh-Louis V; Wirth B; Despons L; Wain-Hobson S; Potier S; et al.
Differential evolution of the Saccharomyces cerevisiae DUP240 paralogs and implication of recombination in phylogeny
01
167150162 2004 NUCLEIC ACIDS RESEARCH 32 (8): 2529-2540
Dahan O; Kupiec M
The Saccharomyces cerevisiae gene CDC40/PRP17 controls cell cycle progression through splicing of the ANC1 gene
03
168154163 2004 NUCLEIC ACIDS RESEARCH 32 (9): 2889-2900
Kreiman G
Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes
00
169250164 2004 NUCLEIC ACIDS RESEARCH 32 (20): 6038-6046
Glockner G; Lehmann R; Romualdi A; Pradella S; Schulte-Spechtel U; et al.
Comparative analysis of the Borrelia garinii genome
01
170155165 2004 NUCLEIC ACIDS RESEARCH 32 (22): 6469-6478
Mathias JR; Hanlon SE; O'Flanagan RA; Sengupta AM; Vershon AK
Repression of the yeast HO gene by the MAT alpha 2 and MATa1 homeodomain proteins
00
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
171163168 2004 PLOS BIOLOGY 2 (8): 1208-1223
Patil CK; Li H; Walter P
Gcn4p and novel upstream activating sequences regulate targets of the unfolded protein response
00
1723124169 2004 PLOS BIOLOGY 2 (12): 2202-2219
Gasch AP; Moses AM; Chiang DY; Fraser HB; Berardini M; et al.
Conservation and evolution of cis-regulatory systems in ascomycete fungi
00
173150170 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (2): 434-439
Inada M; Guthrie C
Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs
07
174141171 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (5): 1200-1205
Klevecz RR; Bolen J; Forrest G; Murray DB
A genomewide oscillation in transcription gates DNA replication and cell cycle
011
175238173 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (24): 9003-9008
Kiontke K; Gavin NP; Raynes Y; Roehrig C; Piano F; et al.
Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss
06
176135174 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (24): 9033-9038
Fraser HB; Hirsh AE; Wall DP; Eisen MB
Coevolution of gene expression among interacting proteins
05
177233175 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (27): 10024-10029
Zappulla DC; Cech TR
Yeast telomerase RNA: A flexible scaffold for protein subunits
04
178144176 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (33): 12114-12119
Zhou Q; Wong WH
CisModule: De novo discovery of' cis-regulatory modules by hierarchical mixture modeling
00
179168178 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (39): 14150-14155
Qiu WG; Schutzer SE; Bruno JF; Attie O; Yun X; et al.
Genetic exchange and plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing
04
180129179 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (46): 16234-16239
Das D; Banerjee N; Zhang MQ
Interacting models of cooperative gene regulation
00
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
181120180 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (49): 17156-17161
Iwama H; Gojobori T
Highly conserved upstream sequences for transcription factor genes and implications for the regulatory network
00
182138181 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (50): 17422-17427
Sidoux-Walter F; Pettersson N; Hohmann S
The Saccharomyces cerevisiae aquaporin Aqy1 is involved in sporulation
00
183131182 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101 (52): 18069-18074
Galgoczy DJ; Cassidy-Stone A; Llinas M; O'Rourke SM; Herskowitz I; et al.
Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae
01
184178183 2004 PROTEOMICS 4 (6): 1712-1726
Southan C
Has the yo-yo stopped? - An assessment of human protein-coding gene number
04
185132184 2004 RESEARCH IN MICROBIOLOGY 155 (4): 217-223
Zeyl C
Capturing the adaptive mutation in yeast
00
186184185 2004 RESEARCH IN MICROBIOLOGY 155 (5): 301-310
Korona R
Experimental studies of deleterious mutation in Saccharomyces cerevisiae
00
187151186 2004 RNA-A PUBLICATION OF THE RNA SOCIETY 10 (1): 75-89
Van Nues RW; Brown JD
Saccharomyces SRP RNA secondary structures: A conserved S-domain and extended Alu-domain
01
188326188 2004 SCIENCE 306 (5700): 1367-1370
Gao LZ; Innan H
Very low gene duplication rate in the yeast genome
00
189170189 2004 TRENDS IN ECOLOGY & EVOLUTION 19 (1): 32-38
McGrath CL; Katz LA
Genome diversity in microbial eukaryotes
02
190236190 2004 TRENDS IN GENETICS 20 (9): 403-407
Zhang ZQ; Gu JY; Gu X
How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution?
02
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
191132191 2004 YEAST 21 (6): 519-530
de Sousa HR; Spencer-Martins I; Goncalves P
Differential regulation by glucose and fructose of a gene encoding a specific fructose/H+ symporter in Saccharomyces sensu stricto yeasts
01
192118192 2004 YEAST 21 (12): 1021-1023
Doherty K; Pramanik A; Pride L; Lukose J; Moore CW
Expression of the expanded YFL007w ORF and assignment of the gene name BLM10
00
193231193 2004 YEAST 21 (14): 1195-1203
Talarek N; Louis EJ; Cullin C; Aigle M
Developing methods and strains for genetic studies in the Saccharomyces bayanus var. uvarum species
00
194120194 2005 BIOINFORMATICS 21 (4): 423-429
Kasturi J; Acharya R
Clustering of diverse genomic data using information fusion
00
195124195 2005 BIOINFORMATICS 21 (7): 1172-1179
Kloster M; Tang C; Wingreen NS
Finding regulatory modules through large-scale gene-expression data analysis
00
196150196 2005 BIOTECHNOLOGY AND BIOENGINEERING 89 (1): 53-77
Wei HR; Kaznessis Y
Inferring gene regulatory relationships by combining target-target pattern recognition and regulator-specific motif examination
00
197540197 2005 CELL CYCLE 4 (1): 125-130
Archambault V; Buchler NE; Wilmes GM; Jacobson MD; Cross FR
Two-faced Cyclins with eyes on the targets
01
198321198 2005 COMPARATIVE AND FUNCTIONAL GENOMICS 6 (1-2): 2-16
Howson R; Huh WK; Ghaemmaghami S; Falvo JV; Bower K; et al.
Construction, verification and experimental use of two epitope-tagged collections budding yeast strains
00
199128199 2005 CURRENT BIOLOGY 15 (4): 347-352
McCarroll SA; Li H; Bargmann CI
Identification of transcriptional regulatory elements in chemosensory receptor genes by probabilistic segmentation
00
200268200 2005 EUKARYOTIC CELL 4 (2): 337-345
Williams EH; Bsat N; Bonnefoy N; Butler CA; Fox TD
Alteration of a novel dispensable mitochondrial ribosomal small-subunit protein, Rsm28p, allows translation of defective COX2 mRNAs
00
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
201263201 2005 FEBS LETTERS 579 (8): 1859-1866
Schlitt T; Brazma A
Modelling gene networks at different organisational levels
00
202234202 2005 FEMS YEAST RESEARCH 5 (4-5): 471-483
Nguyen HV; Gaillardin C
Evolutionary relationships between the former species Saccharomyces uvarum and the hybrids Saccharomyces bayanus and Saccharomyces pastorianus; reinstatement of Saccharomyces uvarum (Beijerinck) as a distinct species
00
203154203 2005 GENOME BIOLOGY 6 (2): Art. No. R11
Tripoli G; D'Elia D; Barsanti P; Caggese C
Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae
00
204291204 2005 GENOME BIOLOGY 6 (2): Art. No. R18
Elemento O; Tavazoie S
Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach
00
205194205 2005 GENOME RESEARCH 15 (1): 1-18
Richards S; Liu Y; Bettencourt BR; Hradecky P; Letovsky S; et al.
Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution
02
206427206 2005 GENOME RESEARCH 15 (2): 205-213
Chin CS; Chuang JH; Li H
Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence
00
207269207 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (1): 437-447
Tai SL; Boer VM; Daran-Lapujade P; Walsh MC; de Winde JH; et al.
Two-dimensional transcriptome analysis in chemostat cultures - Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae
00
208352208 2005 JOURNAL OF BIOLOGICAL CHEMISTRY 280 (7): 5169-5177
Novoseler M; Hershkovits G; Katcoff DJ
Functional domains of the yeast chromatin protein Sin1p/Spt2p can bind four-way junction and crossing DNA structures
00
209152209 2005 JOURNAL OF CELL BIOLOGY 168 (1): 103-115
Dimmer KS; Jakobs S; Vogel F; Altmann K; Westermann B
Mdm31 and Mdm32 are inner membrane proteins required for maintenance of mitochondrial shape and stability of mitochondrial DNA nucleoids in yeast
00
210128210 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (1): 174-177
Hirsh AE; Fraser HB; Wall DP
Adjusting for selection on synonymous sites in estimates of evolutionary distance
01
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
211169211 2005 MOLECULAR BIOLOGY AND EVOLUTION 22 (3): 607-619
Macdonald SJ; Long AD
Identifying signatures of selection at the Enhancer of split neurogenic gene complex in Drosophila
00
212128212 2005 MOLECULAR ECOLOGY 14 (2): 415-424
Kosman E; Leonard KJ
Similarity coefficients for molecular markers in studies of genetic relationships between individuals for haploid, diploid, and polyploid species
00
213337213 2005 NATURE 434 (7031): 338-345
Xie XH; Lu J; Kulbokas EJ; Golub TR; Mootha V; et al.
Systematic discovery of regulatory motifs in human promoters and 3 ' UTRs by comparison of several mammals
00
214430214 2005 NATURE GENETICS 37 (3): 295-299
Kafri R; Bar-Even A; Pilpel Y
Transcription control reprogramming in genetic backup circuits
01
215127215 2005 NATURE METHODS 2 (1): 47-53
Kim JW; Bhinge AA; Morgan XC; Iyer VR
Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment
00
216325216 2005 NUCLEIC ACIDS RESEARCH 33: D348-D352
Hermida L; Brachat S; Voegeli S; Philippsen P; Primig M
The Ashbya Genome Database (AGD) - a tool for the yeast community and genome biologists
00
217431217 2005 NUCLEIC ACIDS RESEARCH 33: D364-D368
Guldener U; Munsterkotter M; Kastenmuller G; Strack N; van Helden J; et al.
CYGD: the comprehensive Yeast Genome Database
00
21829218 2005 NUCLEIC ACIDS RESEARCH 33: D374-D377
Balakrishnan R; Christie KR; Costanzo MC; Dolinski K; Dwight SS; et al.
Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)
00
219228219 2005 NUCLEIC ACIDS RESEARCH 33 (1): 162-170
Ye L; Huang XQ
MAP2: multiple alignment of syntenic genomic sequences
00
2203160220 2005 PEPTIDES 26 (2): 337-+
Bardwell L
A walk-through of the yeast mating pheromone response pathway (vol 25, pg 1465, 2004)
00
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
221330221 2005 PLOS BIOLOGY 3 (1): 95-102
Eddy SR
A model of the statistical power of comparative genome sequence analysis
01
222137222 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (4): 1092-1097
Gu ZL; David L; Petrov D; Jones T; Davis RW; et al.
Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae
00
223245223 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (5): 1572-1577
Brem RB; Kruglyak L
The landscape of genetic complexity across 5,700 gene expression traits in yeast
00
224447224 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (7): 2454-2459
Washietl S; Hofacker IL; Stadler PF
Fast and reliable prediction of noncoding RNAs
01
225424225 2005 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102 (13): 4795-4800
Margulies EH; Vinson JP; Miller W; Jaffe DB; Lindblad-Toh K; et al.
An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing
00
226149226 2005 REPRODUCTION 129 (1): 1-7
Wrobel G; Primig M
Mammalian male germ cells are fertile ground for expression profiling of sexual reproduction
00
227363227 2005 YEAST 22 (2): 141-155
Tomishige N; Noda Y; Adachi H; Shimoi H; Yoda K
SKG1, a suppressor gene of synthetic lethality of kex2 Delta gas1 Delta mutations, encodes a novel membrane protein that affects cell wall composition
00
228148228 2005 YEAST 22 (3): 177-192
Liti G; Peruffo A; James SA; Roberts IN; Louis EJ
Inferences of evolutionary relationships from a population survey of LTR-retrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex
00

Generated by: HistCite 2005.04.07