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Tue Feb 1 09:30:45 2005
The I kappa B-NF-kappa B signaling module:
Temporal control and selective gene activation

Hoffmann A, Levchenko A, Scott ML, Baltimore D
SCIENCE 298 (5596): 1241-1245 2002
and the citing papers

Nodes: 104, Authors: 431, Journals: 63, Outer References: 5144, Words: 500
Collection span: 2002 - 2005
View: Overview. Sorted by date.
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
1171 2002 NOV 8 SCIENCE 298(5596):1189-1190
Ting AY; Endy D
Decoding NF-kappa B signaling
58
20192 2002 NOV 8 SCIENCE 298(5596):1241-1245
Hoffmann A; Levchenko A; Scott ML; Baltimore D
The I kappa B-NF-kappa B signaling module: Temporal control and selective gene activation
103103
3110614 2003 MAR 4 CURRENT BIOLOGY 13(5):R198-R207
Roenneberg T; Merrow M
The network of time: Understanding the molecular circadian system
017
414525 2003 MAR 7 JOURNAL OF BIOLOGICAL CHEMISTRY 278(10):8286-8293
Komarova SV; Pilkington MF; Weidema AF; Dixon SJ; Sims SM
RANK ligand-induced elevation of cytosolic Ca2+ accelerates nuclear translocation of nuclear factor kappa B in osteoclasts
011
516317 2003 APR [15] CURRENT OPINION IN CELL BIOLOGY 15(2):221-231
Tyson JJ; Chen KC; Novak B
Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
937
61722 2003 APR 24 FEBS LETTERS 541(1-3):176-177
Jensen MH; Sneppen K; Tiana G
Sustained oscillations and time delays in gene expression of protein Hes1
00
713832 2003 MAY 12 JOURNAL OF CELL BIOLOGY 161(3):497-505
Jacquet M; Renault G; Lallet S; De Mey J; Goldbeter A
Oscillatory nucleocytoplasmic shuttling of the general stress response transcriptional activators Msn2 and Msn4 in Saccharomyces cerevisiae
05
81384 2003 MAY 30 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 305(2):211-214
Lee ZH; Kim HH
Signal transduction by receptor activator of nuclear factor kappa B in osteoclasts
012
916534 2003 JUN 1 JOURNAL OF IMMUNOLOGY 170(11):5615-5624
Dolganiuc A; Kodys K; Kopasz A; Marshall C; Do T; et al.
Hepatitis C virus core and nonstructural protein 3 proteins induce pro-and anti-inflammatory cytokines and inhibit dendritic cell differentiation
017
1019918 2003 JUN 2 EMBO JOURNAL 22(11):2552-2560
Santoro MG; Rossi A; Amici C
New embo member's review - NF-kappa B and virus infection: who controls whom
118
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
1125526 2003 JUN 20 JOURNAL OF BIOLOGICAL CHEMISTRY 278(25):23094-23100
Malek S; Huang DB; Huxford T; Ghosh S; Ghosh G
X-ray crystal structure of an I kappa B beta center dot NF-kappa B p65 homodimer complex
39
1224327 2003 JUN 20 JOURNAL OF BIOLOGICAL CHEMISTRY 278(25):23101-23106
Chen Y; Wu J; Ghosh G
kappa B-Ras binds to the unique insert within the ankyrin repeat domain of I kappa B beta and regulates cytoplasmic retention of I kappa B beta center dot NF-kappa B complexes
16
1317613 2003 [JUN 30] CHRONOBIOLOGY INTERNATIONAL 20(4):559-575
Merrow M; Dragovic Z; Tan Y; Meyer G; Sveric K; et al.
Combining theoretical and experimental approaches to understand the circadian clock
00
1411138 2003 AUG [15] BIOESSAYS 25(8):767-780
Liou HC; Hsia CY
Distinctions between c-Rel and other NF-kappa B proteins in immunity and disease
03
15278220 2003 AUG [15] ENDOCRINE REVIEWS 24(4):488-522
De Bosscher K; Vanden Berghe W; Haegeman G
The interplay between the glucocorticoid receptor and nuclear factor-kappa B or activator protein-1: Molecular mechanisms for gene repression
118
1614928 2003 AUG 15 JOURNAL OF BIOLOGICAL CHEMISTRY 278(33):30881-30888
Yang L; Ross K; Qwarnstrom EE
RelA control of I kappa B alpha phosphorylation - A positive feedback loop for high affinity NF-kappa B complexes
12
1711815 2003 AUG 19 CURRENT BIOLOGY 13(16):R632-R634
Pourquie O; Goldbeter A
Segmentation clock: Insights from computational models
01
1822316 2003 AUG 19 CURRENT BIOLOGY 13(16):1409-1413
Monk NAM
Oscillatory expression of Hes1, p53, and NF-kappa B driven by transcriptional time delays
410
1915721 2003 SEP 1 ENDOCRINOLOGY 144(9):3828-3835
Etgen AM; Acosta-Martinez M
Participation of growth factor signal transduction pathways in estradiol facilitation of female reproductive behavior
02
2014111 2003 SEP 15 BLOOD 102(6):2259-2267
Choi M; Rolle S; Wellner M; Cardoso MC; Scheidereit C; et al.
Inhibition of NF-kappa B by a TAT-NEMO-binding domain peptide accelerates constitutive apoptosis and abrogates LPS-delayed neutrophil apoptosis
09
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
2113131 2003 SEP-OCT [SEP 15] JOURNAL OF BIOMEDICAL SCIENCE 10(5):468-474
Wong PMC; Chung SW
A functional connection between RanGTP,NF-kappa B and septic shock
02
2214440 2003 SEP [15] THROMBOSIS AND HAEMOSTASIS 90(3):528-537
Kolev K; Skopal J; Simon L; Csonka E; Machovich R; et al.
Matrix metalloproteinase-9 expression in post-hypoxic human brain capillary endothelial cells: H2O2 as a trigger and NF-kappa B as a signal transducer
05
231256 2003 OCT [15] BIOCHEMICAL SOCIETY TRANSACTIONS 31:925-929
Lewis RS
Calcium oscillations in T-cells: mechanisms and consequences for gene expression
12
2415219 2003 OCT 15 EMBO JOURNAL 22(20):5530-5539
Hoffmann A; Leung TH; Baltimore D
Genetic analysis of NF-kappa B/Rel transcription factors defines functional specificities
212
2512336 2003 OCT [15] NATURE IMMUNOLOGY 4(10):933-936
Chakraborty AK; Dustin ML; Shaw AS
In silico models for cellular and molecular immunology: successes, promises and challenges
03
2611323 2003 NOV [15] GENOME RESEARCH 13(11):2413-2422
Cho KH; Shin SY; Lee HW; Wolkenhauer O
Investigations into the analysis and modeling of the TNF alpha-mediated NF-kappa B-signaling pathway
23
2724435 2003 NOV [15] MOLECULAR CELL 12(5):1287-1300
Schmidt C; Peng BL; Li ZK; Sclabas GM; Fujioka S; et al.
Mechanisms of proinflammatory cytokine-induced biphasic NF-kappa B activation
213
2819037 2003 NOV [15] NEURAL NETWORKS 16(9):1389-1398
Kikuchi S; Fujimoto K; Kitagawa N; Fuchikawa T; Abe M; et al.
Kinetic simulation of signal transduction system in hippocampal long-term potentiation with dynamic modeling of protein phosphatase 2A
00
2912429 2003 NOV 21 JOURNAL OF BIOLOGICAL CHEMISTRY 278(47):46541-46548
Viatour P; Legrand-Poels S; van Lint C; Warnier M; Merville MP; et al.
Cytoplasmic I kappa B alpha increases NF-kappa B-independent transcription through binding to histone deacetylase (HDAC) 1 and HDAC3
111
3012538 2003 NOV 25 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(24):14235-14240
Idel S; Dansky HM; Breslow JL
A20, a regulator of NF kappa B, maps to an atherosclerosis locus and differs between parental sensitive C57BL/6J and resistant FVB/N strains
03
#LCRNCRNodes / Date / Journal / AuthorsLCSGCS
311925 2003 NOV 28 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 311(4):1117-1132
Feske S; Okamura H; Hogan PG; Rao A
Ca2+/calcineurin signalling in cells of the immune system
05
3214130 2003 NOV 28 JOURNAL OF BIOLOGICAL CHEMISTRY 278(48):47997-48003
Saucerman JJ; Brunton LL; Michailova AP; McCulloch AD
Modeling beta-adrenergic control of cardiac myocyte contractility in silico
310
331233 2003 DEC [15] ANTIMICROBIAL AGENTS AND CHEMOTHERAPY 47(12):3704-3707
Choi JH; Song MJ; Kim SH; Choi SM; Lee DG; et al.
Effect of moxiloxacin on production of proinflammatory cytokines from human peripheral blood mononuclear cells
01
341237 2003 DEC [15] BIOCHEMICAL SOCIETY TRANSACTIONS 31:1503-1509
Cho KH; Wolkenhauer O
Analysis and modelling of signal transduction pathways in systems biology
01
3528212 2003 DEC 15 CANCER RESEARCH 63(24):8837-8847
Dadke D; Fryer BH; Golemis EA; Field J
Activation of p21-activated kinase 1-nuclear factor kappa B signaling by Kaposi's sarcoma-associated herpes virus G protein-coupled receptor during cellular transformation
03
3613724 2003 DEC [15] HEPATOLOGY 38(6):1540-1551
Cavin LG; Romieu-Mourez R; Panta GR; Sun JY; Factor VM; et al.
Inhibition of CK2 activity by TGF-beta 1 promotes I kappa B-alpha protein stabilization and apoptosis of immortalized hepatocytes
02
3715733 2003 DEC [15] JOURNAL OF CELLULAR PHYSIOLOGY 197(3):357-369
Seguin CA; Bernier SM
TNF alpha suppresses link protein and type II collagen expression in chondrocytes: Role of MEK1/2 and NF-kappa B signaling pathways
00
3833539 2003 DEC [15] SIMULATION-TRANSACTIONS OF THE SOCIETY FOR MODELING AND SIMULATION INTERNATIONAL 79(12):726-739
Cho KH; Shin SY; Kolch W; Wolkenhauer O
Experimental design in systems biology, based on parameter sensitivity analysis using a Monte Carlo method: A case study for the TNF alpha-mediated NF-kappa B signal transduction pathway
00
391819 2003 DEC 30 BIOTECHNOLOGY AND BIOENGINEERING 84(7):763-772
Covert MW; Famili I; Palsson BO
Identifying constraints that govern cell behavior: A key to converting conceptual to computational models in biology?
25
4027410 2003 DEC 30 BIOTECHNOLOGY AND BIOENGINEERING 84(7):773-782
Levchenko A
Dynamical and integrative cell signaling: Challenges for the new biology
02
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4112885 2004 JAN 8 NATURE 427(6970):167-171
Zhou HL; Wertz I; O'Rourke K; Ultsch M; Seshagiri S; et al.
Bcl10 activates the NF-kappa B pathway through ubiquitination of NEMO
128
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Jiang BB; Xu SQ; Hou XY; Pimentel DR; Brecher P; et al.
Temporal control of NF-kappa B activation by ERK differentially regulates interleukin-1 beta-induced gene expression
03
4323390 2004 JAN 13 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(2):580-585
Francois P; Hakim V
Design of genetic networks with specified functions by evolution in silico
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4415191 2004 JAN 20 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(3):745-750
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Prominent roles of the NorR and Fur regulators in the Escherichia coli transcriptional response to reactive nitrogen species
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Proteasome inhibitors induce inhibitory kappa B (I kappa B) kinase activation, I kappa B alpha degradation, and nuclear factor kappa B activation in HT-29 cells
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4715467 2004 FEB 6 JOURNAL OF BIOLOGICAL CHEMISTRY 279(6):4285-4291
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Down-regulation of the tumor suppressor PTEN by the tumor necrosis factor-alpha/nuclear factor-kappa B (NF-kappa B)-inducing kinase/NF-kappa B pathway is linked to a default I kappa B-alpha autoregulatory loop
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Suppression of PTEN expression by NF-kappa B prevents apoptosis
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Interleukin-1 beta but not IL-1 alpha at binds to fibrinogen and fibrin and has enhanced activity in the bound form
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Biophysical characterization of the free I kappa B alpha ankyrin repeat domain in solution
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Suppressor of cytokine signaling (SOCS) proteins indirectly regulate toll-like receptor signaling in innate immune cells
00
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Iwai K; Lee BR; Hashiguchi M; Fukushima A; Iwashima M
IkB-alpha-specific transcript regulation by the C-terminal end of c-Rel
00

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