HistCite - Initial sequencing and analysis of the human genome (Lander)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
101	1261 Saha S, Sparks AB, Rago C, Akmaev V, Wang CJ, et al. Using the transcriptome to annotate the genome NATURE BIOTECHNOLOGY. 2002 MAY; 20 (5): 508-512	44	312	2	19
102	3373 Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AFA, et al. Aligning multiple genomic sequences with the threaded blockset aligner GENOME RESEARCH. 2004 APR; 14 (4): 708-715	49	311	7	26
103	238 Dean M, Hamon Y, Chimini G The human ATP-binding cassette (ABC) transporter superfamily JOURNAL OF LIPID RESEARCH. 2001 JUL; 42 (7): 1007-1017	1	303	2	106
104	938 Cohen PTW Protein phosphatase 1 - targeted in many directions JOURNAL OF CELL SCIENCE. 2002 JAN 15; 115 (2): 241-256	1	302	1	195
105	2111 Lewis BP, Green RE, Brenner SE Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 JAN 7; 100 (1): 189-192	47	299	6	37
106	6139 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al. Evolution of genes and genomes on the Drosophila phylogeny NATURE. 2007 NOV 8; 450 (7167): 203-218	13	299	11	151
107	1266 Tabor HK, Risch NJ, Myers RM Candidate-gene approaches for studying complex genetic traits: practical considerations NATURE REVIEWS GENETICS. 2002 MAY; 3 (5): 391-A396	25	297	6	60
108	415 Staunton JE, Slonim DK, Coller HA, Tamayo P, Angelo MJ, et al. Chemosensitivity prediction by transcriptional profiling PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 SEP 11; 98 (19): 10787-10792	12	291	1	16
109	740 Contag CH, Bachmann MH Advances in vivo bioluminescence imaging of gene expression ANNUAL REVIEW OF BIOMEDICAL ENGINEERING. 2002; 4: 235-260	2	291	2	153
110	1174 Templin MF, Stoll D, Schrenk M, Traub PC, Vohringer CF, et al. Protein microarray technology TRENDS IN BIOTECHNOLOGY. 2002 APR; 20 (4): 160-166	8	285	2	55
#	Date / Author / Journal	LCS	GCS	LCR	CR
111	4043 Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, et al. Repbase update, a database of eukaryotic repetitive elements CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 462-467	81	277	7	36
112	145 Glusman G, Yanai I, Rubin I, Lancet D The complete human olfactory subgenome GENOME RESEARCH. 2001 MAY; 11 (5): 685-702	52	276	1	56
113	3307 Kampa D, Cheng J, Kapranov P, Yamanaka M, Brubaker S, et al. Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22 GENOME RESEARCH. 2004 MAR; 14 (3): 331-342	62	276	10	34
114	163 Shevchenko A, Sunyaev S, Loboda A, Shevehenko A, Bork P, et al. Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time of flight mass spectrometry and BLAST homology searching ANALYTICAL CHEMISTRY. 2001 MAY 1; 73 (9): 1917-1926	4	274	2	48
115	4168 Hubbard T, Andrews D, Caccamo M, Cameron G, Chen Y, et al. Ensembl 2005 NUCLEIC ACIDS RESEARCH. 2005 JAN 1; 33: D447-D453	29	272	10	29
116	1161 Griffin TJ, Gygi SP, Ideker T, Rist B, Eng J, et al. Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae MOLECULAR & CELLULAR PROTEOMICS. 2002 APR; 1 (4): 323-333	10	271	2	58
117	3164 Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, et al. Complete sequencing and characterization of 21,243 full-length human cDNAs NATURE GENETICS. 2004 JAN; 36 (1): 40-45	43	269	6	29
118	10 Ostertag EM, Kazazian HH Biology of mammalian L1 retrotransposons ANNUAL REVIEW OF GENETICS. 2001; 35: 501-538	149	268	1	237
119	1308 Enomoto A, Kimura H, Chairoungdua A, Shigeta Y, Jutabha P, et al. Molecular identification of a renal urate-anion exchanger that regulates blood urate levels NATURE. 2002 MAY 23; 417 (6887): 447-452	4	268	1	30
120	2151 Blanc G, Hokamp K, Wolfe KH A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome GENOME RESEARCH. 2003 FEB; 13 (2): 137-144	11	268	6	44
#	Date / Author / Journal	LCS	GCS	LCR	CR
121	4155 Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, et al. Highly conserved non-coding sequences are associated with vertebrate development PLOS BIOLOGY. 2005 JAN; 3 (1): Art. No. e7	2	268	12	79
122	2496 Modrek B, Lee CJ Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss NATURE GENETICS. 2003 JUN; 34 (2): 177-180	70	266	4	18
123	3967 Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, et al. Global identification of human transcribed sequences with genome tiling arrays SCIENCE. 2004 DEC 24; 306 (5705): 2242-2246	43	266	8	21
124	3395 Wasserman WW, Sandelin A Applied bioinformatics for the identification of regulatory elements NATURE REVIEWS GENETICS. 2004 APR; 5 (4): 276-287	18	263	20	98
125	3493 Kall L, Krogh A, Sonnhammer ELL A combined transmembrane topology and signal peptide prediction method JOURNAL OF MOLECULAR BIOLOGY. 2004 MAY 14; 338 (5): 1027-1036	4	263	1	40
126	3449 Birney E, Clamp M, Durbin R GeneWise and genomewise GENOME RESEARCH. 2004 MAY; 14 (5): 988-995	26	262	6	27
127	177 Hastings ML, Krainer AR Pre-mRNA splicing in the new millennium CURRENT OPINION IN CELL BIOLOGY. 2001 JUN; 13 (3): 302-309	35	261	2	54
128	4537 Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, et al. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells NATURE GENETICS. 2005 AUG; 37 (8): 853-862	16	261	4	50
129	5727 Bernstein BE, Meissner A, Lander ES The mammalian epigenome CELL. 2007 FEB 23; 128 (4): 669-681	6	260	14	97
130	1704 Zdobnov EM, von Mering C, Letunic I, Torrents D, Suyama M, et al. Comparative genome and proteome analysis of anopheles gambiae and Drosophila melanogaster SCIENCE. 2002 OCT 4; 298 (5591): 149-159	33	259	6	66
#	Date / Author / Journal	LCS	GCS	LCR	CR
131	2218 Boffelli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, et al. Phylogenetic shadowing of primate sequences to find functional regions of the human genome SCIENCE. 2003 FEB 28; 299 (5611): 1391-1394	42	259	2	14
132	405 Le Hir H, Gatfield D, Izaurralde E, Moore MJ The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay EMBO JOURNAL. 2001 SEP 3; 20 (17): 4987-4997	9	258	1	43
133	3623 Kersey PJ, Duarte J, Williams A, Karavidopoulou Y, Birney E, et al. The International Protein Index: An integrated database for proteomics experiments PROTEOMICS. 2004 JUL; 4 (7): 1985-1988	8	258	1	9
134	1369 Lercher MJ, Urrutia AO, Hurst LD Clustering of housekeeping genes provides a unified model of gene order in the human genome NATURE GENETICS. 2002 JUN; 31 (2): 180-183	41	257	1	15
135	266 Klinge CM Estrogen receptor interaction with estrogen response elements NUCLEIC ACIDS RESEARCH. 2001 JUL 15; 29 (14): 2905-2919	2	256	1	200
136	744 Honjo T, Kinoshita K, Muramatsu M Molecular mechanism of class switch recombination: Linkage with somatic hypermutation ANNUAL REVIEW OF IMMUNOLOGY. 2002; 20: 165-196	3	256	2	256
137	4372 Xu R, Wunsch D Survey of clustering algorithms IEEE TRANSACTIONS ON NEURAL NETWORKS. 2005 MAY; 16 (3): 645-678	0	256	2	294
138	183 Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE Segmental duplications: Organization and impact within the current Human Genome Project assembly GENOME RESEARCH. 2001 JUN; 11 (6): 1005-1017	97	253	4	40
139	3694 Mitchell RS, Beitzel BF, Schroder ARW, Shinn P, Chen HM, et al. Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences PLOS BIOLOGY. 2004 AUG; 2 (8): Art. No. e234	0	253	6	39
140	151 Wolfe KH Yesterday's polyploids and the mystery of diploidization NATURE REVIEWS GENETICS. 2001 MAY; 2 (5): 333-341	30	251	2	66
#	Date / Author / Journal	LCS	GCS	LCR	CR
141	1370 McLysaght A, Hokamp K, Wolfe KH Extensive genomic duplication during early chordate evolution NATURE GENETICS. 2002 JUN; 31 (2): 200-204	44	250	7	31
142	417 Bieker JJ Kruppel-like factors: Three fingers in many pies JOURNAL OF BIOLOGICAL CHEMISTRY. 2001 SEP 14; 276 (37): 34355-34358	4	248	2	77
143	2258 Patterson SD, Aebersold RH Proteomics: the first decade and beyond NATURE GENETICS. 2003 MAR; 33: 311-323	13	247	4	198
144	5311 Blencowe BJ Alternative splicing: New insights from global analyses CELL. 2006 JUL 14; 126 (1): 37-47	27	247	18	83
145	1900 Muir TW Semisynthesis of proteins by expressed protein ligation ANNUAL REVIEW OF BIOCHEMISTRY. 2003; 72: 249-289	2	245	2	167
146	2997 Lowrey PL, Takahashi JS Mammalian circadian biology: Elucidating genome-wide levels of temporal organization ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2004; 5: 407-441	1	244	4	232
147	4173 Stamm S, Ben-Ari S, Rafalska I, Tang YS, Zhang ZY, et al. Function of alternative splicing GENE. 2005 JAN 3; 344: 1-20	32	243	18	237
148	4303 Ross MT, Grafham DV, Coffey AJ, Scherer S, McLay K, et al. The DNA sequence of the human X chromosome NATURE. 2005 MAR 17; 434 (7031): 325-337	24	243	18	67
149	906 English JM, Cobb MH Pharmacological inhibitors of MAPK pathways TRENDS IN PHARMACOLOGICAL SCIENCES. 2002 JAN; 23 (1): 40-45	2	240	2	55
150	2187 Duan JB, Wainwright MS, Comeron JM, Saitou N, Sanders AR, et al. Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor HUMAN MOLECULAR GENETICS. 2003 FEB 1; 12 (3): 205-216	13	240	2	59
#	Date / Author / Journal	LCS	GCS	LCR	CR
151	1007 Morgante M, Hanafey M, Powell W Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes NATURE GENETICS. 2002 FEB; 30 (2): 194-200	12	239	3	36
152	603 Saha S, Bardelli A, Buckhaults P, Velculescu VE, Rago C, et al. A phosphatase associated with metastasis of colorectal cancer SCIENCE. 2001 NOV 9; 294 (5545): 1343-1346	5	238	2	24
153	2733 Dewannieux M, Esnault C, Heidmann T LINE-mediated retrotransposition of marked Alu sequences NATURE GENETICS. 2003 SEP; 35 (1): 41-48	169	236	7	49
154	4166 Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, et al. Rfam: annotating non-coding RNAs in complete genomes NUCLEIC ACIDS RESEARCH. 2005 JAN 1; 33: D121-D124	4	234	2	18
155	4674 Myers S, Bottolo L, Freeman C, McVean G, Donnelly P A fine-scale map of recombination rates and hotspots across the human genome SCIENCE. 2005 OCT 14; 310 (5746): 321-324	33	234	6	28
156	1008 Arap W, Kolonin MG, Trepel M, Lahdenranta J, Cardo-Vila M, et al. Steps toward mapping the human vasculature by phage display NATURE MEDICINE. 2002 FEB; 8 (2): 121-127	5	233	2	35
157	5827 Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, et al. Evolutionary and biomedical insights from the rhesus macaque genome SCIENCE. 2007 APR 13; 316 (5822): 222-234	56	233	18	71
158	2573 Puente XS, Sanchez LM, Overall CM, Lopez-Otin C Human and mouse proteases: A comparative genomic approach NATURE REVIEWS GENETICS. 2003 JUL; 4 (7): 544-558	14	232	15	143
159	3547 Ellegren H Microsatellites: Simple sequences with complex evolution NATURE REVIEWS GENETICS. 2004 JUN; 5 (6): 435-445	17	232	6	134
160	1044 Schutte BC, Mitros JP, Bartlettt JA, Walters JD, Jia HP, et al. Discovery of five conserved beta-defensin gene clusters using a computational search strategy PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 FEB 19; 99 (4): 2129-2133	1	231	2	26
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161	1058 Ma B, Tromp J, Li M PatternHunter: faster and more sensitive homology search BIOINFORMATICS. 2002 MAR; 18 (3): 440-445	18	231	2	16
162	2712 Thomas PD, Campbell MJ, Kejariwal A, Mi HY, Karlak B, et al. PANTHER: A library of protein families and subfamilies indexed by function GENOME RESEARCH. 2003 SEP; 13 (9): 2129-2141	11	228	5	44
163	2413 Bleicher KH, Bohm HJ, Muller K, Alanine AI Hit and lead generation: Beyond high-throughput screening NATURE REVIEWS DRUG DISCOVERY. 2003 MAY; 2 (5): 369-378	8	226	3	44
164	3689 Fukagawa T, Nogami M, Yoshikawa M, Ikeno M, Okazaki T, et al. Dicer is essential for formation of the heterochromatin structure in vertebrate cells NATURE CELL BIOLOGY. 2004 AUG; 6 (8): 784-791	10	226	1	29
165	156 Wouters FS, Verveer PJ, Bastiaens PIH Imaging biochemistry inside cells TRENDS IN CELL BIOLOGY. 2001 MAY; 11 (5): 203-211	3	224	2	68
166	1662 Bouwman P, Philipsen S Regulation of the activity of Sp1-related transcription factors MOLECULAR AND CELLULAR ENDOCRINOLOGY. 2002 SEP 30; 195 (1-2): 27-38	3	223	2	127
167	2612 Sperandio V, Torres AG, Jarvis B, Nataro JP, Kaper JB Bacteria-host communication: The language of hormones PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 JUL 22; 100 (15): 8951-8956	0	223	2	42
168	983 Grisart B, Coppieters W, Farnir F, Karim L, Ford C, et al. Positional candidate cloning of a QTL in dairy cattle: Identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition GENOME RESEARCH. 2002 FEB; 12 (2): 222-231	9	222	1	28
169	1264 Feschotte C, Jiang N, Wessler SR Plant transposable elements: Where genetics meets genomics NATURE REVIEWS GENETICS. 2002 MAY; 3 (5): 329-341	31	221	3	117
170	4657 Dehal P, Boore JL Two rounds of whole genome duplication in the ancestral vertebrate PLOS BIOLOGY. 2005 OCT; 3 (10): Art. No. e314	0	218	17	51
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171	2791 Beutler B, Hoebe K, Du X, Ulevitch RJ How we detect microbes and respond to them: the Toll-like receptors and their transducers JOURNAL OF LEUKOCYTE BIOLOGY. 2003 OCT; 74 (4): 479-485	0	216	1	67
172	3396 Mattick JS RNA regulation: a new genetics? NATURE REVIEWS GENETICS. 2004 APR; 5 (4): 316-323	16	215	17	80
173	897 Brett D, Pospisil H, Valcarcel J, Reich J, Bork P Alternative splicing and genome complexity NATURE GENETICS. 2002 JAN; 30 (1): 29-30	70	212	1	12
174	3337 Wu M, Sun LV, Vamathevan J, Riegler M, Deboy R, et al. Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: A streamlined genome overrun by mobile genetic elements PLOS BIOLOGY. 2004 MAR; 2 (3): Art. No. e69	0	211	6	100
175	3138 Branda CS, Dymecki SM Talking about a revolution: The impact of site-specific recombinases on genetic analyses in mice DEVELOPMENTAL CELL. 2004 JAN; 6 (1): 7-28	1	208	8	198
176	1780 Koonin EV, Wolf YI, Karev GP The structure of the protein universe and genome evolution NATURE. 2002 NOV 14; 420 (6912): 218-223	11	203	8	76
177	2362 Vassilatis DK, Hohmann JG, Zeng H, Li FS, Ranchalis JE, et al. The G protein-coupled receptor repertoires of human and mouse PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 APR 15; 100 (8): 4903-4908	19	203	5	35
178	2865 Long M, Betran E, Thornton K, Wang W The origin of new genes: Glimpses from the young and old NATURE REVIEWS GENETICS. 2003 NOV; 4 (11): 865-875	24	202	15	122
179	3473 Shendure J, Mitra RD, Varma C, Church GM Advanced sequencing technologies: Methods and goals NATURE REVIEWS GENETICS. 2004 MAY; 5 (5): 335-344	17	202	13	107
180	1779 Guttmacher AE, Collins FS Genomic medicine - A primer NEW ENGLAND JOURNAL OF MEDICINE. 2002 NOV 7; 347 (19): 1512-1520	28	201	3	42
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181	2786 Lucito R, Healy J, Alexander J, Reiner A, Esposito D, et al. Representational oligonucleotide microarray analysis: A high-resolution method to detect genome copy number variation GENOME RESEARCH. 2003 OCT; 13 (10): 2291-2305	16	201	2	26
182	4517 Murphy WJ, Larkin DM, Everts-van der Wind A, Bourque G, Tesler G, et al. Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps SCIENCE. 2005 JUL 22; 309 (5734): 613-617	33	201	13	31
183	190 Vitkup D, Melamud E, Moult J, Sander C Completeness in structural genomics NATURE STRUCTURAL BIOLOGY. 2001 JUN; 8 (6): 559-566	22	200	2	51
184	681 Davuluri RV, Grosse I, Zhang MQ Computational identification of promoters and first exons in the human genome NATURE GENETICS. 2001 DEC; 29 (4): 412-417	37	200	3	24
185	4104 Dai MH, Wang PL, Boyd AD, Kostov G, Athey B, et al. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data NUCLEIC ACIDS RESEARCH. 2005; 33 (20): Art. No. e175	1	200	5	21
186	4239 Washietl S, Hofacker IL, Stadler PF Fast and reliable prediction of noncoding RNAs PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 FEB 15; 102 (7): 2454-2459	4	200	14	47
187	4921 Villanueva J, Shaffer DR, Philip J, Chaparro CA, Erdjument-Bromage H, et al. Differential exoprotease activities confer tumor-specific serum peptidome patterns JOURNAL OF CLINICAL INVESTIGATION. 2006 JAN; 116 (1): 271-284	0	200	1	79
188	5662 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al. New developments in the InterPro database NUCLEIC ACIDS RESEARCH. 2007 JAN; 35: D224-D228	6	200	1	22
189	612 Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, et al. REPuter: the manifold applications of repeat analysis on a genomic scale NUCLEIC ACIDS RESEARCH. 2001 NOV 15; 29 (22): 4633-4642	12	198	1	25
190	944 Markstein M, Markstein P, Markstein V, Levine MS Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 JAN 22; 99 (2): 763-768	13	198	2	37
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191	333 Martienssen RA, Colot V DNA methylation and epigenetic inheritance in plants and filamentous fungi SCIENCE. 2001 AUG 10; 293 (5532): 1070-1074	9	197	1	95
192	1178 Ramaswamy S, Golub TR DNA microarrays in clinical oncology JOURNAL OF CLINICAL ONCOLOGY. 2002 APR 1; 20 (7): 1932-1941	8	195	3	64
193	2087 Kashkush K, Feldman M, Levy AA Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat NATURE GENETICS. 2003 JAN; 33 (1): 102-106	18	195	4	26
194	684 McIntire JJ, Umetsu SE, Akbari O, Potter M, Kuchroo VK, et al. Identification of Tapr (an airway hyperreactivity regulatory locus) and the linked Tim gene family NATURE IMMUNOLOGY. 2001 DEC; 2 (12): 1109-1116	1	194	2	63
195	1469 Chapman ER Synaptotagmin: A Ca2+ sensor that triggers exocytosis? NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2002 JUL; 3 (7): 498-508	1	194	2	139
196	2962 Wang XW, Seed B A PCR primer bank for quantitative gene expression analysis NUCLEIC ACIDS RESEARCH. 2003 DEC 15; 31 (24): Art. No. e154	0	194	2	38
197	77 Aravind L, Dixit VM, Koonin EV Apoptotic molecular machinery: Vastly increased complexity in vertebrates revealed by genome comparisons SCIENCE. 2001 FEB 16; 291 (5507): 1279-+	21	193	1	42
198	487 Mira A, Ochman H, Moran NA Deletional bias and the evolution of bacterial genomes TRENDS IN GENETICS. 2001 OCT; 17 (10): 589-596	5	193	2	54
199	65 Li WH, Gu ZL, Wang HD, Nekrutenko A Evolutionary analyses of the human genome NATURE. 2001 FEB 15; 409 (6822): 847-849	72	192	1	5
200	513 Schueler MG, Higgins AW, Rudd MK, Gustashaw K, Willard HF Genomic and genetic definition of a functional human centromere SCIENCE. 2001 OCT 5; 294 (5540): 109-115	37	192	3	43

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101

1261 Saha S, Sparks AB, Rago C, Akmaev V, Wang CJ, et al.

Using the transcriptome to annotate the genome

NATURE BIOTECHNOLOGY. 2002 MAY; 20 (5): 508-512

312

102

3373 Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AFA, et al.

Aligning multiple genomic sequences with the threaded blockset aligner

GENOME RESEARCH. 2004 APR; 14 (4): 708-715

311

103

238 Dean M, Hamon Y, Chimini G

The human ATP-binding cassette (ABC) transporter superfamily

JOURNAL OF LIPID RESEARCH. 2001 JUL; 42 (7): 1007-1017

303

106

104

938 Cohen PTW

Protein phosphatase 1 - targeted in many directions

JOURNAL OF CELL SCIENCE. 2002 JAN 15; 115 (2): 241-256

302

195

105

2111 Lewis BP, Green RE, Brenner SE

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 JAN 7; 100 (1): 189-192

299

106

6139 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al.

Evolution of genes and genomes on the Drosophila phylogeny

NATURE. 2007 NOV 8; 450 (7167): 203-218

299

151

107

1266 Tabor HK, Risch NJ, Myers RM

Candidate-gene approaches for studying complex genetic traits: practical considerations

NATURE REVIEWS GENETICS. 2002 MAY; 3 (5): 391-A396

297

108

415 Staunton JE, Slonim DK, Coller HA, Tamayo P, Angelo MJ, et al.

Chemosensitivity prediction by transcriptional profiling

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 SEP 11; 98 (19): 10787-10792

291

109

740 Contag CH, Bachmann MH

Advances in vivo bioluminescence imaging of gene expression

ANNUAL REVIEW OF BIOMEDICAL ENGINEERING. 2002; 4: 235-260

291

153

110

1174 Templin MF, Stoll D, Schrenk M, Traub PC, Vohringer CF, et al.

Protein microarray technology

TRENDS IN BIOTECHNOLOGY. 2002 APR; 20 (4): 160-166

285

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LCS

GCS

LCR

111

4043 Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, et al.

Repbase update, a database of eukaryotic repetitive elements

CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 462-467

277

112

145 Glusman G, Yanai I, Rubin I, Lancet D

The complete human olfactory subgenome

GENOME RESEARCH. 2001 MAY; 11 (5): 685-702

276

113

3307 Kampa D, Cheng J, Kapranov P, Yamanaka M, Brubaker S, et al.

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

GENOME RESEARCH. 2004 MAR; 14 (3): 331-342

276

114

163 Shevchenko A, Sunyaev S, Loboda A, Shevehenko A, Bork P, et al.

Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time of flight mass spectrometry and BLAST homology searching

ANALYTICAL CHEMISTRY. 2001 MAY 1; 73 (9): 1917-1926

274

115

4168 Hubbard T, Andrews D, Caccamo M, Cameron G, Chen Y, et al.

Ensembl 2005

NUCLEIC ACIDS RESEARCH. 2005 JAN 1; 33: D447-D453

272

116

1161 Griffin TJ, Gygi SP, Ideker T, Rist B, Eng J, et al.

Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae

MOLECULAR & CELLULAR PROTEOMICS. 2002 APR; 1 (4): 323-333

271

117

3164 Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, et al.

Complete sequencing and characterization of 21,243 full-length human cDNAs

NATURE GENETICS. 2004 JAN; 36 (1): 40-45

269

118

10 Ostertag EM, Kazazian HH

Biology of mammalian L1 retrotransposons

ANNUAL REVIEW OF GENETICS. 2001; 35: 501-538

149

268

237

119

1308 Enomoto A, Kimura H, Chairoungdua A, Shigeta Y, Jutabha P, et al.

Molecular identification of a renal urate-anion exchanger that regulates blood urate levels

NATURE. 2002 MAY 23; 417 (6887): 447-452

268

120

2151 Blanc G, Hokamp K, Wolfe KH

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

GENOME RESEARCH. 2003 FEB; 13 (2): 137-144

268

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LCS

GCS

LCR

121

4155 Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, et al.

Highly conserved non-coding sequences are associated with vertebrate development

PLOS BIOLOGY. 2005 JAN; 3 (1): Art. No. e7

268

122

2496 Modrek B, Lee CJ

Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

NATURE GENETICS. 2003 JUN; 34 (2): 177-180

266

123

3967 Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, et al.

Global identification of human transcribed sequences with genome tiling arrays

SCIENCE. 2004 DEC 24; 306 (5705): 2242-2246

266

124

3395 Wasserman WW, Sandelin A

Applied bioinformatics for the identification of regulatory elements

NATURE REVIEWS GENETICS. 2004 APR; 5 (4): 276-287

263

125

3493 Kall L, Krogh A, Sonnhammer ELL

A combined transmembrane topology and signal peptide prediction method

JOURNAL OF MOLECULAR BIOLOGY. 2004 MAY 14; 338 (5): 1027-1036

263

126

3449 Birney E, Clamp M, Durbin R

GeneWise and genomewise

GENOME RESEARCH. 2004 MAY; 14 (5): 988-995

262

127

177 Hastings ML, Krainer AR

Pre-mRNA splicing in the new millennium

CURRENT OPINION IN CELL BIOLOGY. 2001 JUN; 13 (3): 302-309

261

128

4537 Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, et al.

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

NATURE GENETICS. 2005 AUG; 37 (8): 853-862

261

129

5727 Bernstein BE, Meissner A, Lander ES

The mammalian epigenome

CELL. 2007 FEB 23; 128 (4): 669-681

260

130

1704 Zdobnov EM, von Mering C, Letunic I, Torrents D, Suyama M, et al.

Comparative genome and proteome analysis of anopheles gambiae and Drosophila melanogaster

SCIENCE. 2002 OCT 4; 298 (5591): 149-159

259

Date / Author / Journal

LCS

GCS

LCR

131

2218 Boffelli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, et al.

Phylogenetic shadowing of primate sequences to find functional regions of the human genome

SCIENCE. 2003 FEB 28; 299 (5611): 1391-1394

259

132

405 Le Hir H, Gatfield D, Izaurralde E, Moore MJ

The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay

EMBO JOURNAL. 2001 SEP 3; 20 (17): 4987-4997

258

133

3623 Kersey PJ, Duarte J, Williams A, Karavidopoulou Y, Birney E, et al.

The International Protein Index: An integrated database for proteomics experiments

PROTEOMICS. 2004 JUL; 4 (7): 1985-1988

258

134

1369 Lercher MJ, Urrutia AO, Hurst LD

Clustering of housekeeping genes provides a unified model of gene order in the human genome

NATURE GENETICS. 2002 JUN; 31 (2): 180-183

257

135

266 Klinge CM

Estrogen receptor interaction with estrogen response elements

NUCLEIC ACIDS RESEARCH. 2001 JUL 15; 29 (14): 2905-2919

256

200

136

744 Honjo T, Kinoshita K, Muramatsu M

Molecular mechanism of class switch recombination: Linkage with somatic hypermutation

ANNUAL REVIEW OF IMMUNOLOGY. 2002; 20: 165-196

256

137

4372 Xu R, Wunsch D

Survey of clustering algorithms

IEEE TRANSACTIONS ON NEURAL NETWORKS. 2005 MAY; 16 (3): 645-678

256

294

138

183 Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE

Segmental duplications: Organization and impact within the current Human Genome Project assembly

GENOME RESEARCH. 2001 JUN; 11 (6): 1005-1017

253

139

3694 Mitchell RS, Beitzel BF, Schroder ARW, Shinn P, Chen HM, et al.

Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences

PLOS BIOLOGY. 2004 AUG; 2 (8): Art. No. e234

253

140

151 Wolfe KH

Yesterday's polyploids and the mystery of diploidization

NATURE REVIEWS GENETICS. 2001 MAY; 2 (5): 333-341

251

Date / Author / Journal

LCS

GCS

LCR

141

1370 McLysaght A, Hokamp K, Wolfe KH

Extensive genomic duplication during early chordate evolution

NATURE GENETICS. 2002 JUN; 31 (2): 200-204

250

142

417 Bieker JJ

Kruppel-like factors: Three fingers in many pies

JOURNAL OF BIOLOGICAL CHEMISTRY. 2001 SEP 14; 276 (37): 34355-34358

248

143

2258 Patterson SD, Aebersold RH

Proteomics: the first decade and beyond

NATURE GENETICS. 2003 MAR; 33: 311-323

247

198

144

5311 Blencowe BJ

Alternative splicing: New insights from global analyses

CELL. 2006 JUL 14; 126 (1): 37-47

247

145

1900 Muir TW

Semisynthesis of proteins by expressed protein ligation

ANNUAL REVIEW OF BIOCHEMISTRY. 2003; 72: 249-289

245

167

146

2997 Lowrey PL, Takahashi JS

Mammalian circadian biology: Elucidating genome-wide levels of temporal organization

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2004; 5: 407-441

244

232

147

4173 Stamm S, Ben-Ari S, Rafalska I, Tang YS, Zhang ZY, et al.

Function of alternative splicing

GENE. 2005 JAN 3; 344: 1-20

243

237

148

4303 Ross MT, Grafham DV, Coffey AJ, Scherer S, McLay K, et al.

The DNA sequence of the human X chromosome

NATURE. 2005 MAR 17; 434 (7031): 325-337

243

149

906 English JM, Cobb MH

Pharmacological inhibitors of MAPK pathways

TRENDS IN PHARMACOLOGICAL SCIENCES. 2002 JAN; 23 (1): 40-45

240

150

2187 Duan JB, Wainwright MS, Comeron JM, Saitou N, Sanders AR, et al.

Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor

HUMAN MOLECULAR GENETICS. 2003 FEB 1; 12 (3): 205-216

240

Date / Author / Journal

LCS

GCS

LCR

151

1007 Morgante M, Hanafey M, Powell W

Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes

NATURE GENETICS. 2002 FEB; 30 (2): 194-200

239

152

603 Saha S, Bardelli A, Buckhaults P, Velculescu VE, Rago C, et al.

A phosphatase associated with metastasis of colorectal cancer

SCIENCE. 2001 NOV 9; 294 (5545): 1343-1346

238

153

2733 Dewannieux M, Esnault C, Heidmann T

LINE-mediated retrotransposition of marked Alu sequences

NATURE GENETICS. 2003 SEP; 35 (1): 41-48

169

236

154

4166 Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, et al.

Rfam: annotating non-coding RNAs in complete genomes

NUCLEIC ACIDS RESEARCH. 2005 JAN 1; 33: D121-D124

234

155

4674 Myers S, Bottolo L, Freeman C, McVean G, Donnelly P

A fine-scale map of recombination rates and hotspots across the human genome

SCIENCE. 2005 OCT 14; 310 (5746): 321-324

234

156

1008 Arap W, Kolonin MG, Trepel M, Lahdenranta J, Cardo-Vila M, et al.

Steps toward mapping the human vasculature by phage display

NATURE MEDICINE. 2002 FEB; 8 (2): 121-127

233

157

5827 Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, et al.

Evolutionary and biomedical insights from the rhesus macaque genome

SCIENCE. 2007 APR 13; 316 (5822): 222-234

233

158

2573 Puente XS, Sanchez LM, Overall CM, Lopez-Otin C

Human and mouse proteases: A comparative genomic approach

NATURE REVIEWS GENETICS. 2003 JUL; 4 (7): 544-558

232

143

159

3547 Ellegren H

Microsatellites: Simple sequences with complex evolution

NATURE REVIEWS GENETICS. 2004 JUN; 5 (6): 435-445

232

134

160

1044 Schutte BC, Mitros JP, Bartlettt JA, Walters JD, Jia HP, et al.

Discovery of five conserved beta-defensin gene clusters using a computational search strategy

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 FEB 19; 99 (4): 2129-2133

231

Date / Author / Journal

LCS

GCS

LCR

161

1058 Ma B, Tromp J, Li M

PatternHunter: faster and more sensitive homology search

BIOINFORMATICS. 2002 MAR; 18 (3): 440-445

231

162

2712 Thomas PD, Campbell MJ, Kejariwal A, Mi HY, Karlak B, et al.

PANTHER: A library of protein families and subfamilies indexed by function

GENOME RESEARCH. 2003 SEP; 13 (9): 2129-2141

228

163

2413 Bleicher KH, Bohm HJ, Muller K, Alanine AI

Hit and lead generation: Beyond high-throughput screening

NATURE REVIEWS DRUG DISCOVERY. 2003 MAY; 2 (5): 369-378

226

164

3689 Fukagawa T, Nogami M, Yoshikawa M, Ikeno M, Okazaki T, et al.

Dicer is essential for formation of the heterochromatin structure in vertebrate cells

NATURE CELL BIOLOGY. 2004 AUG; 6 (8): 784-791

226

165

156 Wouters FS, Verveer PJ, Bastiaens PIH

Imaging biochemistry inside cells

TRENDS IN CELL BIOLOGY. 2001 MAY; 11 (5): 203-211

224

166

1662 Bouwman P, Philipsen S

Regulation of the activity of Sp1-related transcription factors

MOLECULAR AND CELLULAR ENDOCRINOLOGY. 2002 SEP 30; 195 (1-2): 27-38

223

127

167

2612 Sperandio V, Torres AG, Jarvis B, Nataro JP, Kaper JB

Bacteria-host communication: The language of hormones

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 JUL 22; 100 (15): 8951-8956

223

168

983 Grisart B, Coppieters W, Farnir F, Karim L, Ford C, et al.

Positional candidate cloning of a QTL in dairy cattle: Identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition

GENOME RESEARCH. 2002 FEB; 12 (2): 222-231

222

169

1264 Feschotte C, Jiang N, Wessler SR

Plant transposable elements: Where genetics meets genomics

NATURE REVIEWS GENETICS. 2002 MAY; 3 (5): 329-341

221

117

170

4657 Dehal P, Boore JL

Two rounds of whole genome duplication in the ancestral vertebrate

PLOS BIOLOGY. 2005 OCT; 3 (10): Art. No. e314

218

Date / Author / Journal

LCS

GCS

LCR

171

2791 Beutler B, Hoebe K, Du X, Ulevitch RJ

How we detect microbes and respond to them: the Toll-like receptors and their transducers

JOURNAL OF LEUKOCYTE BIOLOGY. 2003 OCT; 74 (4): 479-485

216

172

3396 Mattick JS

RNA regulation: a new genetics?

NATURE REVIEWS GENETICS. 2004 APR; 5 (4): 316-323

215

173

897 Brett D, Pospisil H, Valcarcel J, Reich J, Bork P

Alternative splicing and genome complexity

NATURE GENETICS. 2002 JAN; 30 (1): 29-30

212

174

3337 Wu M, Sun LV, Vamathevan J, Riegler M, Deboy R, et al.

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: A streamlined genome overrun by mobile genetic elements

PLOS BIOLOGY. 2004 MAR; 2 (3): Art. No. e69

211

100

175

3138 Branda CS, Dymecki SM

Talking about a revolution: The impact of site-specific recombinases on genetic analyses in mice

DEVELOPMENTAL CELL. 2004 JAN; 6 (1): 7-28

208

198

176

1780 Koonin EV, Wolf YI, Karev GP

The structure of the protein universe and genome evolution

NATURE. 2002 NOV 14; 420 (6912): 218-223

203

177

2362 Vassilatis DK, Hohmann JG, Zeng H, Li FS, Ranchalis JE, et al.

The G protein-coupled receptor repertoires of human and mouse

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 APR 15; 100 (8): 4903-4908

203

178

2865 Long M, Betran E, Thornton K, Wang W

The origin of new genes: Glimpses from the young and old

NATURE REVIEWS GENETICS. 2003 NOV; 4 (11): 865-875

202

122

179

3473 Shendure J, Mitra RD, Varma C, Church GM

Advanced sequencing technologies: Methods and goals

NATURE REVIEWS GENETICS. 2004 MAY; 5 (5): 335-344

202

107

180

1779 Guttmacher AE, Collins FS

Genomic medicine - A primer

NEW ENGLAND JOURNAL OF MEDICINE. 2002 NOV 7; 347 (19): 1512-1520

201

Date / Author / Journal

LCS

GCS

LCR

181

2786 Lucito R, Healy J, Alexander J, Reiner A, Esposito D, et al.

Representational oligonucleotide microarray analysis: A high-resolution method to detect genome copy number variation

GENOME RESEARCH. 2003 OCT; 13 (10): 2291-2305

201

182

4517 Murphy WJ, Larkin DM, Everts-van der Wind A, Bourque G, Tesler G, et al.

Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps

SCIENCE. 2005 JUL 22; 309 (5734): 613-617

201

183

190 Vitkup D, Melamud E, Moult J, Sander C

Completeness in structural genomics

NATURE STRUCTURAL BIOLOGY. 2001 JUN; 8 (6): 559-566

200

184

681 Davuluri RV, Grosse I, Zhang MQ

Computational identification of promoters and first exons in the human genome

NATURE GENETICS. 2001 DEC; 29 (4): 412-417

200

185

4104 Dai MH, Wang PL, Boyd AD, Kostov G, Athey B, et al.

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

NUCLEIC ACIDS RESEARCH. 2005; 33 (20): Art. No. e175

200

186

4239 Washietl S, Hofacker IL, Stadler PF

Fast and reliable prediction of noncoding RNAs

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 FEB 15; 102 (7): 2454-2459

200

187

4921 Villanueva J, Shaffer DR, Philip J, Chaparro CA, Erdjument-Bromage H, et al.

Differential exoprotease activities confer tumor-specific serum peptidome patterns

JOURNAL OF CLINICAL INVESTIGATION. 2006 JAN; 116 (1): 271-284

200

188

5662 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al.

New developments in the InterPro database

NUCLEIC ACIDS RESEARCH. 2007 JAN; 35: D224-D228

200

189

612 Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, et al.

REPuter: the manifold applications of repeat analysis on a genomic scale

NUCLEIC ACIDS RESEARCH. 2001 NOV 15; 29 (22): 4633-4642

198

190

944 Markstein M, Markstein P, Markstein V, Levine MS

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 JAN 22; 99 (2): 763-768

198

Date / Author / Journal

LCS

GCS

LCR

191

333 Martienssen RA, Colot V

DNA methylation and epigenetic inheritance in plants and filamentous fungi

SCIENCE. 2001 AUG 10; 293 (5532): 1070-1074

197

192

1178 Ramaswamy S, Golub TR

DNA microarrays in clinical oncology

JOURNAL OF CLINICAL ONCOLOGY. 2002 APR 1; 20 (7): 1932-1941

195

193

2087 Kashkush K, Feldman M, Levy AA

Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

NATURE GENETICS. 2003 JAN; 33 (1): 102-106

195

194

684 McIntire JJ, Umetsu SE, Akbari O, Potter M, Kuchroo VK, et al.

Identification of Tapr (an airway hyperreactivity regulatory locus) and the linked Tim gene family

NATURE IMMUNOLOGY. 2001 DEC; 2 (12): 1109-1116

194

195

1469 Chapman ER

Synaptotagmin: A Ca2+ sensor that triggers exocytosis?

NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2002 JUL; 3 (7): 498-508

194

139

196

2962 Wang XW, Seed B

A PCR primer bank for quantitative gene expression analysis

NUCLEIC ACIDS RESEARCH. 2003 DEC 15; 31 (24): Art. No. e154

194

197

77 Aravind L, Dixit VM, Koonin EV

Apoptotic molecular machinery: Vastly increased complexity in vertebrates revealed by genome comparisons

SCIENCE. 2001 FEB 16; 291 (5507): 1279-+

193

198

487 Mira A, Ochman H, Moran NA

Deletional bias and the evolution of bacterial genomes

TRENDS IN GENETICS. 2001 OCT; 17 (10): 589-596

193

199

65 Li WH, Gu ZL, Wang HD, Nekrutenko A

Evolutionary analyses of the human genome

NATURE. 2001 FEB 15; 409 (6822): 847-849

192

200

513 Schueler MG, Higgins AW, Rudd MK, Gustashaw K, Willard HF

Genomic and genetic definition of a functional human centromere

SCIENCE. 2001 OCT 5; 294 (5540): 109-115

192

Initial sequencing and analysis of the human genome (Lander) The papers citing Lander ES, et al. "Initial sequencing and analysis of the human genome." NATURE. 2001 FEB 15; 409 (6822): 860-921	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 38623, GCS 253809, CR 422506 Collection span: 2000 - 2010
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