HistCite - Initial sequencing and analysis of the human genome (Lander)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
6501	2880 Keightley PD, Gaffney DJ Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 NOV 11; 100 (23): 13402-13406	12	50	7	36
6502	2881 Brentani H, Caballero OL, Camargo AA, da Silva AM, da Silva WA, et al. The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 NOV 11; 100 (23): 13418-13423	8	45	10	33
6503	2882 Chabardes-Garonne D, Mejean A, Aude JC, Cheval L, Di Stefano A, et al. A panoramic view of gene expression in the human kidney PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 NOV 11; 100 (23): 13710-13715	1	53	4	33
6504	2895 Petersen SV, Oury TD, Valnickova Z, Thogersen IB, Hojrup P, et al. The dual nature of human extracellular superoxide dismutase: One sequence and two structures PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 NOV 25; 100 (24): 13875-13880	0	24	1	39
6505	2896 Zambrowicz BP, Abuin A, Ramirez-Solis R, Richter LJ, Piggott J, et al. Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 NOV 25; 100 (24): 14109-14114	3	117	2	28
6506	2957 Matsuyama A, Shiraishi T, Trapasso F, Kuroki T, Alder H, et al. Fragile site orthologs FHIT/FRA3B and Fhit/Fra14A2: Evolutionarily conserved but highly recombinogenic PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 DEC 9; 100 (25): 14988-14993	1	31	3	48
6507	3200 Veldic M, Caruncho HJ, Liu WS, Davis J, Satta R, et al. DNA-methyltransferase 1 mRNA is selectively overexpressed in telencephalic GABAergic interneurons of schizophrenia brains PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JAN 6; 101 (1): 348-353	1	74	1	39
6508	3213 Pi WH, Yang ZG, Wang J, Ruan L, Yu XP, et al. The LTR enhancer of ERV-9 human endogenous retrovirus is active in oocytes and progenitor cells in transgenic zebrafish and humans PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JAN 20; 101 (3): 805-810	2	15	1	38
6509	3278 Plavec I, Sirenko O, Privat S, Wang YK, Dajee M, et al. Method for analyzing signaling networks in complex cellular systems PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 3; 101 (5): 1223-1228	2	25	3	21
6510	3279 Jurka J, Kohany O, Pavlicek A, Kapitonov VV, Jurka MV Duplication, coclustering, and selection of human Alu retrotransposons PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 3; 101 (5): 1268-1272	23	41	18	42
#	Date / Author / Journal	LCS	GCS	LCR	CR
6511	3282 Hughes JF, Coffin JM Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: Implications for human and viral evolution PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 10; 101 (6): 1668-1672	28	59	5	29
6512	3288 Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, et al. Whole-genome shotgun assembly and comparison of human genome assemblies PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 17; 101 (7): 1916-1921	25	63	13	31
6513	3291 Auboeuft D, Dowhan DH, Kang YK, Larkin K, Lee JW, et al. Differential recruitment of nuclear receptor coactivators may determine alternative RNA splice site choice in target genes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 24; 101 (8): 2270-2274	3	41	3	31
6514	3292 Malnic B, Godfrey PA, Buck LB The human olfactory receptor gene family PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 24; 101 (8): 2584-2589	5	100	3	36
6515	3356 Sabo PJ, Humbert R, Hawrylycz M, Wallace JC, Dorschner MO, et al. Genome-wide identification of DNasel hypersensitive sites using active chromatin sequence libraries PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 MAR 30; 101 (13): 4537-4542	7	58	6	37
6516	3418 Belshaw R, Pereira V, Katzourakis A, Talbot G, Paces J, et al. Long-term reinfection of the human genome by endogenous retroviruses PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 APR 6; 101 (14): 4894-4899	38	73	3	35
6517	3426 Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, et al. A gene atlas of the mouse and human protein-encoding transcriptomes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 APR 20; 101 (16): 6062-6067	58	820	8	36
6518	3578 Min BS, Weinert BT, Rio DC Interplay between Drosophila Bloom's syndrome helicase and Ku autoantigen during nonhomologous end joining repair of P element-induced DNA breaks PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JUN 15; 101 (24): 8906-8911	0	13	2	44
6519	3585 Manna D, Breier AM, Higgins NP Microarray analysis of transposition targets in Escherichia coli: The impact of transcription PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JUN 29; 101 (26): 9780-9785	1	15	2	44
6520	3641 Thomas EE, Srebro N, Sebat J, Navin N, Healy J, et al. Distribution of short paired duplications in mammalian genomes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JUL 13; 101 (28): 10349-10354	5	14	6	19
#	Date / Author / Journal	LCS	GCS	LCR	CR
6521	3703 Wei CL, Ng P, Chiu KP, Wong CH, Ang CC, et al. 5 ' Long serial analysis of gene expression (LongSAGE) and 3 ' LongSAGE for transcriptome characterization and genome annotation PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 AUG 10; 101 (32): 11701-11706	3	47	11	32
6522	3704 Caenepeel S, Charydczak G, Sudarsanam S, Hunter T, Manning G The mouse kinome: Discovery and comparative genomics of all mouse protein kinases PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 AUG 10; 101 (32): 11707-11712	4	94	8	31
6523	3759 Angata T, Margulies EH, Green ED, Varki A Large-scale sequencing of the CD33-related Siglec gene cluster in five mammalian species reveals rapid evolution by multiple mechanisms PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 SEP 7; 101 (36): 13251-13256	3	52	12	37
6524	3815 Bannert N, Kurth R Retroelements and the human genome: New perspectives on an old relation PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 OCT 5; 101: 14572-14579	47	105	14	107
6525	3816 Messing J, Bharti AK, Karlowski WM, Gundlach H, Kim HR, et al. Sequence composition and genome organization of maize PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 OCT 5; 101 (40): 14349-14354	8	124	5	38
6526	3880 Yeo G, Hoon S, Venkatesh B, Burge CB Variation in sequence and organization of splicing regulatory elements in vertebrate genes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 NOV 2; 101 (44): 15700-15705	14	85	11	42
6527	3881 Wan DF, Gong Y, Qin WX, Zhang PP, Li JJ, et al. Large-scale cDNA transfection screening for genes related to cancer development and progression PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 NOV 2; 101 (44): 15724-15729	1	21	6	35
6528	3887 Pachter L, Sturmfels B Parametric inference for biological sequence analysis PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 NOV 16; 101 (46): 16138-16143	1	20	1	22
6529	3895 Britten RJ Coding sequences of functioning human genes derived entirely from mobile element sequences PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 NOV 30; 101 (48): 16825-16830	10	26	5	30
6530	3951 Iwama H, Gojobori T Highly conserved upstream sequences for transcription factor genes and implications for the regulatory network PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 DEC 7; 101 (49): 17156-17161	4	22	3	20
#	Date / Author / Journal	LCS	GCS	LCR	CR
6531	4175 Perincheri S, Dingle RWC, Peterson ML, Spear BT Hereditary persistence of alpha-fetoprotein and H19 expression in liver of BALB/cJ mice is due to a retrovirus insertion in the Zhx2 gene PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JAN 11; 102 (2): 396-401	0	14	3	31
6532	4184 Dupressoir A, Marceau G, Vernochet C, Benit L, Kanellopoulos C, et al. Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JAN 18; 102 (3): 725-730	10	67	6	41
6533	4239 Washietl S, Hofacker IL, Stadler PF Fast and reliable prediction of noncoding RNAs PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 FEB 15; 102 (7): 2454-2459	4	200	14	47
6534	4290 Margulies EH, Maduro VVB, Thomas PJ, Tomkins JP, Amemiya CT, et al. Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 MAR 1; 102 (9): 3354-3359	11	48	16	37
6535	4293 Campos JL, Urpi L, Sanmartin T, Gouyette C, Subirana JA DNA coiled coils PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 MAR 8; 102 (10): 3663-3666	3	6	1	29
6536	4294 Goldstein AYN, Jan YN, Luo LQ Function and regulation of Tumbleweed (RacGAP50C) in neuroblast proliferation and neuronal morphogenesis PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 MAR 8; 102 (10): 3834-3839	0	13	3	36
6537	4302 Zhou Y, Mishra B Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 MAR 15; 102 (11): 4051-4056	3	15	18	33
6538	4353 Britten RJ The majority of human genes have regions repeated in other human genes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 APR 12; 102 (15): 5466-5470	2	5	3	11
6539	4360 Ruparel H, Bi LR, Li ZM, Bai XP, Kim DH, et al. Design and synthesis of a 3 '-O-allyl photocleavable fluorescent nucleotide as a reversible terminator for DNA sequencing by synthesis PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 APR 26; 102 (17): 5932-5937	3	24	3	32
6540	4361 Holman AG, Coffin JM Symmetrical base preferences surrounding HIV-1 and avian sarcoma/leukosis virus but not murine leukemia virus integration sites PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 APR 26; 102 (17): 6103-6107	10	46	5	12
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6541	4465 Fukami-Kobayashi K, Shiina T, Anzai T, Sano K, Yamazaki M, et al. Genomic evolution of MHC class I region in primates PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JUN 28; 102 (26): 9230-9234	1	14	7	52
6542	4510 Touchon M, Nicolay S, Audit B, Brodie Brodie EB, d'Aubenton-Carafa Y, et al. Replication-associated strand asymmetries in mammalian genomes: Toward detection of replication origins PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JUL 12; 102 (28): 9836-9841	6	31	7	40
6543	4518 Schueler MG, Dunn JM, Bird CP, Ross MT, Viggiano L, et al. Progressive proximal expansion of the primate X chromosome centromere PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JUL 26; 102 (30): 10563-10568	5	22	8	58
6544	4668 Pritsker M, Doniger TT, Kramer LC, Westcot SE, Lemischka IR Diversification of stem cell molecular repertoire by alternative splicing PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 OCT 4; 102 (40): 14290-14295	3	23	10	38
6545	4714 Blumenstiel JP, Hartl DL Evidence for maternally transmitted small interfering RNA in the repression of transposition in Drosophila virilis PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 NOV 1; 102 (44): 15965-15970	3	32	2	47
6546	4777 Everts-van der Wind A, Larkin DM, Green CA, Elliott JS, Olmstead CA, et al. A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 DEC 20; 102 (51): 18526-18531	9	60	9	22
6547	4964 Cordaux R, Batzer MA Teaching an old dog new tricks: SINEs of canine genomic diversity PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JAN 31; 103 (5): 1157-1158	3	6	19	30
6548	4965 Shemesh R, Novik A, Edelheit S, Sorek R Genomic fossils as a snapshot of the human transcriptome PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JAN 31; 103 (5): 1364-1369	2	14	9	32
6549	4966 Saxonov S, Berg P, Brutlag DL A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JAN 31; 103 (5): 1412-1417	10	94	12	45
6550	5007 Britten R Transposable elements have contributed to thousands of human proteins PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 FEB 7; 103 (6): 1798-1803	8	21	4	9
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6551	5013 Kamal M, Xie XH, Lander ES A large family of ancient repeat elements in the human genome is under strong selection PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 FEB 21; 103 (8): 2740-2745	20	39	9	21
6552	5063 de Quervain DJF, Papassotiropoulos A Identification of a genetic cluster influencing memory performance and hippocampal activity in humans PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAR 14; 103 (11): 4270-4274	0	34	2	50
6553	5135 Seleme MDC, Vetter MR, Cordaux R, Bastone L, Batzer MA, et al. Extensive individual variation in L1 retrotransposition capability contributes to human genetic diversity PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 APR 25; 103 (17): 6611-6616	14	19	27	57
6554	5186 Comeron JM Weak selection and recent mutational changes influence polymorphic synonymous mutations in humans PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAY 2; 103 (18): 6940-6945	1	11	11	85
6555	5188 Blazej RG, Kumaresan P, Mathies RA Microfabricated bioprocessor for integrated nanoliter-scale Sanger DNA sequencing PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAY 9; 103 (19): 7240-7245	14	82	7	34
6556	5195 Jordan IK Evolutionary tinkering with transposable elements PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAY 23; 103 (21): 7941-7942	2	5	3	14
6557	5196 Cordaux R, Udit S, Batzer MA, Feschotte C Birth of a chimeric primate gene by capture of the transposase gene from a mobile element PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAY 23; 103 (21): 8101-8106	26	53	8	35
6558	5249 Qiao W, Mooney M, Bird AJ, Winge DR, Eide DJ Zinc binding to a regulatory zinc-sensing domain monitored in vivo by using FRET PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 6; 103 (23): 8674-8679	1	12	2	34
6559	5250 Bogerd HP, Wiegand HL, Hulme AE, Garcia-Perez JL, O'Shea KS, et al. Cellular inhibitors of long interspersed element 1 and Alu retrotransposition PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 6; 103 (23): 8780-8785	21	82	8	45
6560	5254 Liu Z, Lin H, Ye S, Liu QY, Meng Z, et al. Remarkably high activities of testicular cytochrome c in destroying reactive oxygen species and in triggering apoptosis PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 13; 103 (24): 8965-8970	0	17	2	50
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6561	5258 Boissinot S, Davis J, Entezam A, Petrov D, Furano AV Fitness cost of LINE-1 (L1) activity in humans PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 20; 103 (25): 9590-9594	16	21	8	28
6562	5267 Galisteo ML, Yang Y, Urena J, Schlessinger J Activation of the nonreceptor protein tyrosine kinase Ack by multiple extracellular stimuli PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 27; 103 (26): 9796-9801	0	9	1	35
6563	5268 Nishihara H, Hasegawa M, Okada N Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 27; 103 (26): 9929-9934	7	56	4	53
6564	5343 Shi YY, Miller GA, Qian H, Bomsztyk K Free-energy distribution of binary protein - protein binding suggests cross-species interactorne differences PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 AUG 1; 103 (31): 11527-11532	0	6	1	41
6565	5395 Zhang XHF, Chasin LA Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 SEP 5; 103 (36): 13427-13432	17	47	14	33
6566	5398 Stiller M, Green RE, Ronan M, Simons JF, Du L, et al. Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 SEP 12; 103 (37): 13578-13584	3	45	4	45
6567	5436 Feschotte C The piggyBac transposon holds promise for human gene therapy PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 OCT 10; 103 (41): 14981-14982	1	6	7	23
6568	5437 Wu SCY, Meir YJJ, Coates CJ, Handler AM, Pelczar P, et al. piggyBac is a flexible and highly active transposon as compared to Sleeping Beauty, Tol2 and Mos1 in mammalian cells PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 OCT 10; 103 (41): 15008-15013	6	42	4	33
6569	5479 Christensen SM, Ye JQ, Eickbush TH RNA from the 5 ' end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 NOV 21; 103 (47): 17602-17607	1	15	5	21
6570	5480 Xing J, Wang H, Belancio VP, Cordaux R, Deininger PL, et al. Emergence of primate genes by retrotransposon-mediated sequence transduction PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 NOV 21; 103 (47): 17608-17613	16	27	12	35
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6571	5481 Wheelan SJ, Scheifele LZ, Martinez-Murillo F, Irizarry RA, Boeke JD Transposon insertion site profiling chip (TIP-chip) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 NOV 21; 103 (47): 17632-17637	1	8	5	24
6572	5482 Albrecht-Buehler G Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 NOV 21; 103 (47): 17828-17833	2	10	3	21
6573	5531 An WF, Han JS, Wheelan SJ, Davis ES, Coombes CE, et al. Active retrotransposition by a synthetic L1 element in mice PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 DEC 5; 103 (49): 18662-18667	9	16	22	68
6574	5536 Jackman WR, Stock DW Transgenic analysis of Dlx regulation in fish tooth development reveals evolutionary retention of enhancer function despite organ loss PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 DEC 19; 103 (51): 19390-19395	0	8	1	63
6575	5717 Pritham EJ, Feschotte C Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 FEB 6; 104 (6): 1895-1900	8	22	12	37
6576	5725 Shedlock AM, Botka CW, Zhao SY, Shetty J, Zhang TT, et al. Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genorne PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 FEB 20; 104 (8): 2767-2772	8	25	8	43
6577	5765 Moelleken J, Malsam J, Betts MJ, Movafeghi A, Reckmann I, et al. Differential localization of coatomer complex isoforms within the Golgi apparatus PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAR 13; 104 (11): 4425-4430	0	10	1	51
6578	5773 Liu S, Liu SY, Zhu XL, Liang HH, Cao AN, et al. Nonnatural protein-protein interaction-pair design by key residues grafting PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAR 27; 104 (13): 5330-5335	1	12	1	48
6579	5774 Tanay A, O'Donnell AH, Damelin M, Bestor TH Hyperconserved CpG domains underlie Polycomb-binding sites PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAR 27; 104 (13): 5521-5526	0	26	7	21
6580	5824 Holmes EC Ancient lentiviruses leave their mark PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 APR 10; 104 (15): 6095-6096	0	2	2	12
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6581	5825 Flores M, Morales L, Gonzaga-Jauregui C, Dominguez-Vidana R, Zepeda C, et al. Recurrent DNA inversion rearrangements in the human genome PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 APR 10; 104 (15): 6099-6106	0	19	6	35
6582	5826 Katzourakis A, Tristem M, Pybus OG, Gifford RJ Discovery and analysis of the first endogenous lentivirus PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 APR 10; 104 (15): 6261-6265	5	30	8	34
6583	5867 Lowe CB, Bejerano G, Haussler D Thousands of human mobile element fragments undergo strong purifying selection near developmental genes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAY 8; 104 (19): 8005-8010	19	46	13	47
6584	5870 Moran NA Symbiosis as an adaptive process and source of phenotypic complexity PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAY 15; 104: 8627-8633	1	35	4	83
6585	5871 Bernardi G The neoselectionist theory of genome evolution PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAY 15; 104 (20): 8385-8390	5	32	13	103
6586	5919 Sasidharan R, Chothia C The selection of acceptable protein mutations PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 JUN 12; 104 (24): 10080-10085	0	7	3	27
6587	5920 Cheung TH, Barthel KKB, Kwan YL, Liu XD Identifying pattern-defined regulatory islands in mammalian genomes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 JUN 12; 104 (24): 10116-10121	0	2	5	34
6588	6049 Wildman DE, Uddin M, Opazo JC, Liu G, Lefort V, et al. Genomics, biogeography, and the diversification of placental mammals PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 SEP 4; 104 (36): 14395-14400	2	42	9	54
6589	6053 Briggs AW, Stenzel U, Johnson PLF, Green RE, Kelso J, et al. Patterns of damage in genomic DNA sequences from a Neandertal PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 SEP 11; 104 (37): 14616-14621	0	26	4	32
6590	6055 Zhang CL, Hastings ML, Krainer AR, Zhang MQ Dual-specificity splice sites function alternatively as 5 ' and 3 ' splice sites PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 SEP 18; 104 (38): 15028-15033	4	8	9	34
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6591	6102 Lang TA, Hansson GC, Samuelsson T Gel-forming mucins appeared early in metazoan evolution PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 OCT 9; 104 (41): 16209-16214	0	10	1	21
6592	6143 Wang T, Zeng J, Lowe CB, Sellers RG, Salama SR, et al. Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 NOV 20; 104 (47): 18613-18618	11	25	11	44
6593	6177 Nozawa M, Kawahara Y, Nei M Genomic drift and copy number variation of sensory receptor genes in humans PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 DEC 18; 104 (51): 20421-20426	1	21	4	44
6594	6178 Mangeney M, Renard M, Schlecht-Louf G, Bouallaga I, Heidmann O, et al. Placental syncytins: Genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 DEC 18; 104 (51): 20534-20539	5	20	9	36
6595	6303 Rauch TA, Zhong XY, Wu XW, Wang M, Kernstine KH, et al. High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 JAN 8; 105 (1): 252-257	2	29	2	49
6596	6306 Fredlake CP, Hert DG, Kan CW, Chiesl TN, Root BE, et al. Ultrafast DNA sequencing on a microchip by a hybrid separation mechanism that gives 600 bases in 6.5 minutes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 JAN 15; 105 (2): 476-481	8	19	7	47
6597	6395 Uddin M, Goodman M, Erez O, Romero R, Liu G, et al. Distinct genomic signatures of adaptation in pre-and postnatal environments during human evolution PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 MAR 4; 105 (9): 3215-3220	3	9	5	56
6598	6399 Sasaki T, Nishihara H, Hirakawa M, Fujimura K, Tanaka M, et al. Possible involvement of SINEs in mammalian-specific brain formation PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 MAR 18; 105 (11): 4220-4225	9	18	11	42
6599	6402 Sinzelle L, Kapitonov VV, Grzela DP, Jursch T, Jurka J, et al. Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 MAR 25; 105 (12): 4715-4720	2	5	6	24
6600	6434 Einstein R, Jordan H, Zhou W, Brenner M, Moses EG, et al. Alternative splicing of the G protein-coupled receptor superfamily in human airway smooth muscle diversifies the complement of receptors PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 APR 1; 105 (13): 5230-5235	2	10	6	33

Date / Author / Journal

LCS

GCS

LCR

6501

2880 Keightley PD, Gaffney DJ

Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 NOV 11; 100 (23): 13402-13406

6502

2881 Brentani H, Caballero OL, Camargo AA, da Silva AM, da Silva WA, et al.

The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 NOV 11; 100 (23): 13418-13423

6503

2882 Chabardes-Garonne D, Mejean A, Aude JC, Cheval L, Di Stefano A, et al.

A panoramic view of gene expression in the human kidney

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 NOV 11; 100 (23): 13710-13715

6504

2895 Petersen SV, Oury TD, Valnickova Z, Thogersen IB, Hojrup P, et al.

The dual nature of human extracellular superoxide dismutase: One sequence and two structures

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 NOV 25; 100 (24): 13875-13880

6505

2896 Zambrowicz BP, Abuin A, Ramirez-Solis R, Richter LJ, Piggott J, et al.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 NOV 25; 100 (24): 14109-14114

117

6506

2957 Matsuyama A, Shiraishi T, Trapasso F, Kuroki T, Alder H, et al.

Fragile site orthologs FHIT/FRA3B and Fhit/Fra14A2: Evolutionarily conserved but highly recombinogenic

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 DEC 9; 100 (25): 14988-14993

6507

3200 Veldic M, Caruncho HJ, Liu WS, Davis J, Satta R, et al.

DNA-methyltransferase 1 mRNA is selectively overexpressed in telencephalic GABAergic interneurons of schizophrenia brains

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JAN 6; 101 (1): 348-353

6508

3213 Pi WH, Yang ZG, Wang J, Ruan L, Yu XP, et al.

The LTR enhancer of ERV-9 human endogenous retrovirus is active in oocytes and progenitor cells in transgenic zebrafish and humans

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JAN 20; 101 (3): 805-810

6509

3278 Plavec I, Sirenko O, Privat S, Wang YK, Dajee M, et al.

Method for analyzing signaling networks in complex cellular systems

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 3; 101 (5): 1223-1228

6510

3279 Jurka J, Kohany O, Pavlicek A, Kapitonov VV, Jurka MV

Duplication, coclustering, and selection of human Alu retrotransposons

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 3; 101 (5): 1268-1272

Date / Author / Journal

LCS

GCS

LCR

6511

3282 Hughes JF, Coffin JM

Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: Implications for human and viral evolution

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 10; 101 (6): 1668-1672

6512

3288 Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, et al.

Whole-genome shotgun assembly and comparison of human genome assemblies

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 17; 101 (7): 1916-1921

6513

3291 Auboeuft D, Dowhan DH, Kang YK, Larkin K, Lee JW, et al.

Differential recruitment of nuclear receptor coactivators may determine alternative RNA splice site choice in target genes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 24; 101 (8): 2270-2274

6514

3292 Malnic B, Godfrey PA, Buck LB

The human olfactory receptor gene family

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 24; 101 (8): 2584-2589

100

6515

3356 Sabo PJ, Humbert R, Hawrylycz M, Wallace JC, Dorschner MO, et al.

Genome-wide identification of DNasel hypersensitive sites using active chromatin sequence libraries

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 MAR 30; 101 (13): 4537-4542

6516

3418 Belshaw R, Pereira V, Katzourakis A, Talbot G, Paces J, et al.

Long-term reinfection of the human genome by endogenous retroviruses

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 APR 6; 101 (14): 4894-4899

6517

3426 Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, et al.

A gene atlas of the mouse and human protein-encoding transcriptomes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 APR 20; 101 (16): 6062-6067

820

6518

3578 Min BS, Weinert BT, Rio DC

Interplay between Drosophila Bloom's syndrome helicase and Ku autoantigen during nonhomologous end joining repair of P element-induced DNA breaks

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JUN 15; 101 (24): 8906-8911

6519

3585 Manna D, Breier AM, Higgins NP

Microarray analysis of transposition targets in Escherichia coli: The impact of transcription

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JUN 29; 101 (26): 9780-9785

6520

3641 Thomas EE, Srebro N, Sebat J, Navin N, Healy J, et al.

Distribution of short paired duplications in mammalian genomes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JUL 13; 101 (28): 10349-10354

Date / Author / Journal

LCS

GCS

LCR

6521

3703 Wei CL, Ng P, Chiu KP, Wong CH, Ang CC, et al.

5 ' Long serial analysis of gene expression (LongSAGE) and 3 ' LongSAGE for transcriptome characterization and genome annotation

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 AUG 10; 101 (32): 11701-11706

6522

3704 Caenepeel S, Charydczak G, Sudarsanam S, Hunter T, Manning G

The mouse kinome: Discovery and comparative genomics of all mouse protein kinases

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 AUG 10; 101 (32): 11707-11712

6523

3759 Angata T, Margulies EH, Green ED, Varki A

Large-scale sequencing of the CD33-related Siglec gene cluster in five mammalian species reveals rapid evolution by multiple mechanisms

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 SEP 7; 101 (36): 13251-13256

6524

3815 Bannert N, Kurth R

Retroelements and the human genome: New perspectives on an old relation

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 OCT 5; 101: 14572-14579

105

107

6525

3816 Messing J, Bharti AK, Karlowski WM, Gundlach H, Kim HR, et al.

Sequence composition and genome organization of maize

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 OCT 5; 101 (40): 14349-14354

124

6526

3880 Yeo G, Hoon S, Venkatesh B, Burge CB

Variation in sequence and organization of splicing regulatory elements in vertebrate genes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 NOV 2; 101 (44): 15700-15705

6527

3881 Wan DF, Gong Y, Qin WX, Zhang PP, Li JJ, et al.

Large-scale cDNA transfection screening for genes related to cancer development and progression

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 NOV 2; 101 (44): 15724-15729

6528

3887 Pachter L, Sturmfels B

Parametric inference for biological sequence analysis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 NOV 16; 101 (46): 16138-16143

6529

3895 Britten RJ

Coding sequences of functioning human genes derived entirely from mobile element sequences

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 NOV 30; 101 (48): 16825-16830

6530

3951 Iwama H, Gojobori T

Highly conserved upstream sequences for transcription factor genes and implications for the regulatory network

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 DEC 7; 101 (49): 17156-17161

Date / Author / Journal

LCS

GCS

LCR

6531

4175 Perincheri S, Dingle RWC, Peterson ML, Spear BT

Hereditary persistence of alpha-fetoprotein and H19 expression in liver of BALB/cJ mice is due to a retrovirus insertion in the Zhx2 gene

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JAN 11; 102 (2): 396-401

6532

4184 Dupressoir A, Marceau G, Vernochet C, Benit L, Kanellopoulos C, et al.

Syncytin-A and syncytin-B, two fusogenic placenta-specific murine envelope genes of retroviral origin conserved in Muridae

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JAN 18; 102 (3): 725-730

6533

4239 Washietl S, Hofacker IL, Stadler PF

Fast and reliable prediction of noncoding RNAs

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 FEB 15; 102 (7): 2454-2459

200

6534

4290 Margulies EH, Maduro VVB, Thomas PJ, Tomkins JP, Amemiya CT, et al.

Comparative sequencing provides insights about the structure and conservation of marsupial and monotreme genomes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 MAR 1; 102 (9): 3354-3359

6535

4293 Campos JL, Urpi L, Sanmartin T, Gouyette C, Subirana JA

DNA coiled coils

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 MAR 8; 102 (10): 3663-3666

6536

4294 Goldstein AYN, Jan YN, Luo LQ

Function and regulation of Tumbleweed (RacGAP50C) in neuroblast proliferation and neuronal morphogenesis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 MAR 8; 102 (10): 3834-3839

6537

4302 Zhou Y, Mishra B

Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 MAR 15; 102 (11): 4051-4056

6538

4353 Britten RJ

The majority of human genes have regions repeated in other human genes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 APR 12; 102 (15): 5466-5470

6539

4360 Ruparel H, Bi LR, Li ZM, Bai XP, Kim DH, et al.

Design and synthesis of a 3 '-O-allyl photocleavable fluorescent nucleotide as a reversible terminator for DNA sequencing by synthesis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 APR 26; 102 (17): 5932-5937

6540

4361 Holman AG, Coffin JM

Symmetrical base preferences surrounding HIV-1 and avian sarcoma/leukosis virus but not murine leukemia virus integration sites

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 APR 26; 102 (17): 6103-6107

Date / Author / Journal

LCS

GCS

LCR

6541

4465 Fukami-Kobayashi K, Shiina T, Anzai T, Sano K, Yamazaki M, et al.

Genomic evolution of MHC class I region in primates

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JUN 28; 102 (26): 9230-9234

6542

4510 Touchon M, Nicolay S, Audit B, Brodie Brodie EB, d'Aubenton-Carafa Y, et al.

Replication-associated strand asymmetries in mammalian genomes: Toward detection of replication origins

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JUL 12; 102 (28): 9836-9841

6543

4518 Schueler MG, Dunn JM, Bird CP, Ross MT, Viggiano L, et al.

Progressive proximal expansion of the primate X chromosome centromere

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JUL 26; 102 (30): 10563-10568

6544

4668 Pritsker M, Doniger TT, Kramer LC, Westcot SE, Lemischka IR

Diversification of stem cell molecular repertoire by alternative splicing

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 OCT 4; 102 (40): 14290-14295

6545

4714 Blumenstiel JP, Hartl DL

Evidence for maternally transmitted small interfering RNA in the repression of transposition in Drosophila virilis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 NOV 1; 102 (44): 15965-15970

6546

4777 Everts-van der Wind A, Larkin DM, Green CA, Elliott JS, Olmstead CA, et al.

A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 DEC 20; 102 (51): 18526-18531

6547

4964 Cordaux R, Batzer MA

Teaching an old dog new tricks: SINEs of canine genomic diversity

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JAN 31; 103 (5): 1157-1158

6548

4965 Shemesh R, Novik A, Edelheit S, Sorek R

Genomic fossils as a snapshot of the human transcriptome

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JAN 31; 103 (5): 1364-1369

6549

4966 Saxonov S, Berg P, Brutlag DL

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JAN 31; 103 (5): 1412-1417

6550

5007 Britten R

Transposable elements have contributed to thousands of human proteins

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 FEB 7; 103 (6): 1798-1803

Date / Author / Journal

LCS

GCS

LCR

6551

5013 Kamal M, Xie XH, Lander ES

A large family of ancient repeat elements in the human genome is under strong selection

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 FEB 21; 103 (8): 2740-2745

6552

5063 de Quervain DJF, Papassotiropoulos A

Identification of a genetic cluster influencing memory performance and hippocampal activity in humans

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAR 14; 103 (11): 4270-4274

6553

5135 Seleme MDC, Vetter MR, Cordaux R, Bastone L, Batzer MA, et al.

Extensive individual variation in L1 retrotransposition capability contributes to human genetic diversity

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 APR 25; 103 (17): 6611-6616

6554

5186 Comeron JM

Weak selection and recent mutational changes influence polymorphic synonymous mutations in humans

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAY 2; 103 (18): 6940-6945

6555

5188 Blazej RG, Kumaresan P, Mathies RA

Microfabricated bioprocessor for integrated nanoliter-scale Sanger DNA sequencing

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAY 9; 103 (19): 7240-7245

6556

5195 Jordan IK

Evolutionary tinkering with transposable elements

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAY 23; 103 (21): 7941-7942

6557

5196 Cordaux R, Udit S, Batzer MA, Feschotte C

Birth of a chimeric primate gene by capture of the transposase gene from a mobile element

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAY 23; 103 (21): 8101-8106

6558

5249 Qiao W, Mooney M, Bird AJ, Winge DR, Eide DJ

Zinc binding to a regulatory zinc-sensing domain monitored in vivo by using FRET

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 6; 103 (23): 8674-8679

6559

5250 Bogerd HP, Wiegand HL, Hulme AE, Garcia-Perez JL, O'Shea KS, et al.

Cellular inhibitors of long interspersed element 1 and Alu retrotransposition

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 6; 103 (23): 8780-8785

6560

5254 Liu Z, Lin H, Ye S, Liu QY, Meng Z, et al.

Remarkably high activities of testicular cytochrome c in destroying reactive oxygen species and in triggering apoptosis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 13; 103 (24): 8965-8970

Date / Author / Journal

LCS

GCS

LCR

6561

5258 Boissinot S, Davis J, Entezam A, Petrov D, Furano AV

Fitness cost of LINE-1 (L1) activity in humans

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 20; 103 (25): 9590-9594

6562

5267 Galisteo ML, Yang Y, Urena J, Schlessinger J

Activation of the nonreceptor protein tyrosine kinase Ack by multiple extracellular stimuli

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 27; 103 (26): 9796-9801

6563

5268 Nishihara H, Hasegawa M, Okada N

Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 JUN 27; 103 (26): 9929-9934

6564

5343 Shi YY, Miller GA, Qian H, Bomsztyk K

Free-energy distribution of binary protein - protein binding suggests cross-species interactorne differences

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 AUG 1; 103 (31): 11527-11532

6565

5395 Zhang XHF, Chasin LA

Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 SEP 5; 103 (36): 13427-13432

6566

5398 Stiller M, Green RE, Ronan M, Simons JF, Du L, et al.

Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 SEP 12; 103 (37): 13578-13584

6567

5436 Feschotte C

The piggyBac transposon holds promise for human gene therapy

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 OCT 10; 103 (41): 14981-14982

6568

5437 Wu SCY, Meir YJJ, Coates CJ, Handler AM, Pelczar P, et al.

piggyBac is a flexible and highly active transposon as compared to Sleeping Beauty, Tol2 and Mos1 in mammalian cells

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 OCT 10; 103 (41): 15008-15013

6569

5479 Christensen SM, Ye JQ, Eickbush TH

RNA from the 5 ' end of the R2 retrotransposon controls R2 protein binding to and cleavage of its DNA target site

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 NOV 21; 103 (47): 17602-17607

6570

5480 Xing J, Wang H, Belancio VP, Cordaux R, Deininger PL, et al.

Emergence of primate genes by retrotransposon-mediated sequence transduction

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 NOV 21; 103 (47): 17608-17613

Date / Author / Journal

LCS

GCS

LCR

6571

5481 Wheelan SJ, Scheifele LZ, Martinez-Murillo F, Irizarry RA, Boeke JD

Transposon insertion site profiling chip (TIP-chip)

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 NOV 21; 103 (47): 17632-17637

6572

5482 Albrecht-Buehler G

Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 NOV 21; 103 (47): 17828-17833

6573

5531 An WF, Han JS, Wheelan SJ, Davis ES, Coombes CE, et al.

Active retrotransposition by a synthetic L1 element in mice

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 DEC 5; 103 (49): 18662-18667

6574

5536 Jackman WR, Stock DW

Transgenic analysis of Dlx regulation in fish tooth development reveals evolutionary retention of enhancer function despite organ loss

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 DEC 19; 103 (51): 19390-19395

6575

5717 Pritham EJ, Feschotte C

Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 FEB 6; 104 (6): 1895-1900

6576

5725 Shedlock AM, Botka CW, Zhao SY, Shetty J, Zhang TT, et al.

Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genorne

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 FEB 20; 104 (8): 2767-2772

6577

5765 Moelleken J, Malsam J, Betts MJ, Movafeghi A, Reckmann I, et al.

Differential localization of coatomer complex isoforms within the Golgi apparatus

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAR 13; 104 (11): 4425-4430

6578

5773 Liu S, Liu SY, Zhu XL, Liang HH, Cao AN, et al.

Nonnatural protein-protein interaction-pair design by key residues grafting

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAR 27; 104 (13): 5330-5335

6579

5774 Tanay A, O'Donnell AH, Damelin M, Bestor TH

Hyperconserved CpG domains underlie Polycomb-binding sites

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAR 27; 104 (13): 5521-5526

6580

5824 Holmes EC

Ancient lentiviruses leave their mark

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 APR 10; 104 (15): 6095-6096

Date / Author / Journal

LCS

GCS

LCR

6581

5825 Flores M, Morales L, Gonzaga-Jauregui C, Dominguez-Vidana R, Zepeda C, et al.

Recurrent DNA inversion rearrangements in the human genome

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 APR 10; 104 (15): 6099-6106

6582

5826 Katzourakis A, Tristem M, Pybus OG, Gifford RJ

Discovery and analysis of the first endogenous lentivirus

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 APR 10; 104 (15): 6261-6265

6583

5867 Lowe CB, Bejerano G, Haussler D

Thousands of human mobile element fragments undergo strong purifying selection near developmental genes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAY 8; 104 (19): 8005-8010

6584

5870 Moran NA

Symbiosis as an adaptive process and source of phenotypic complexity

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAY 15; 104: 8627-8633

6585

5871 Bernardi G

The neoselectionist theory of genome evolution

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 MAY 15; 104 (20): 8385-8390

103

6586

5919 Sasidharan R, Chothia C

The selection of acceptable protein mutations

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 JUN 12; 104 (24): 10080-10085

6587

5920 Cheung TH, Barthel KKB, Kwan YL, Liu XD

Identifying pattern-defined regulatory islands in mammalian genomes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 JUN 12; 104 (24): 10116-10121

6588

6049 Wildman DE, Uddin M, Opazo JC, Liu G, Lefort V, et al.

Genomics, biogeography, and the diversification of placental mammals

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 SEP 4; 104 (36): 14395-14400

6589

6053 Briggs AW, Stenzel U, Johnson PLF, Green RE, Kelso J, et al.

Patterns of damage in genomic DNA sequences from a Neandertal

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 SEP 11; 104 (37): 14616-14621

6590

6055 Zhang CL, Hastings ML, Krainer AR, Zhang MQ

Dual-specificity splice sites function alternatively as 5 ' and 3 ' splice sites

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 SEP 18; 104 (38): 15028-15033

Date / Author / Journal

LCS

GCS

LCR

6591

6102 Lang TA, Hansson GC, Samuelsson T

Gel-forming mucins appeared early in metazoan evolution

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 OCT 9; 104 (41): 16209-16214

6592

6143 Wang T, Zeng J, Lowe CB, Sellers RG, Salama SR, et al.

Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 NOV 20; 104 (47): 18613-18618

6593

6177 Nozawa M, Kawahara Y, Nei M

Genomic drift and copy number variation of sensory receptor genes in humans

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 DEC 18; 104 (51): 20421-20426

6594

6178 Mangeney M, Renard M, Schlecht-Louf G, Bouallaga I, Heidmann O, et al.

Placental syncytins: Genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 DEC 18; 104 (51): 20534-20539

6595

6303 Rauch TA, Zhong XY, Wu XW, Wang M, Kernstine KH, et al.

High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 JAN 8; 105 (1): 252-257

6596

6306 Fredlake CP, Hert DG, Kan CW, Chiesl TN, Root BE, et al.

Ultrafast DNA sequencing on a microchip by a hybrid separation mechanism that gives 600 bases in 6.5 minutes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 JAN 15; 105 (2): 476-481

6597

6395 Uddin M, Goodman M, Erez O, Romero R, Liu G, et al.

Distinct genomic signatures of adaptation in pre-and postnatal environments during human evolution

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 MAR 4; 105 (9): 3215-3220

6598

6399 Sasaki T, Nishihara H, Hirakawa M, Fujimura K, Tanaka M, et al.

Possible involvement of SINEs in mammalian-specific brain formation

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 MAR 18; 105 (11): 4220-4225

6599

6402 Sinzelle L, Kapitonov VV, Grzela DP, Jursch T, Jurka J, et al.

Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 MAR 25; 105 (12): 4715-4720

6600

6434 Einstein R, Jordan H, Zhou W, Brenner M, Moses EG, et al.

Alternative splicing of the G protein-coupled receptor superfamily in human airway smooth muscle diversifies the complement of receptors

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 APR 1; 105 (13): 5230-5235

Initial sequencing and analysis of the human genome (Lander) The papers citing Lander ES, et al. "Initial sequencing and analysis of the human genome." NATURE. 2001 FEB 15; 409 (6822): 860-921	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 38623, GCS 253809, CR 422506 Collection span: 2000 - 2010
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