HistCite - Initial sequencing and analysis of the human genome (Lander)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
2301	5759 Ray DA, Walker JA, Batzer MA Mobile element-based forensic genomics MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 2007 MAR 1; 616 (1-2): 24-33	2	4	31	109
2302	5785 Mevel-Ninio M, Pelisson A, Kinder J, Campos AR, Bucheton A The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis GENETICS. 2007 APR; 175 (4): 1615-1624	2	19	2	38
2303	5790 Meglecz E, Anderson SJ, Bourguet D, Butcher R, Caldas A, et al. Microsatellite flanking region similarities among different loci within insect species INSECT MOLECULAR BIOLOGY. 2007 APR; 16 (2): 175-185	2	18	6	77
2304	5808 Konkel MK, Wang JX, Liang P, Batzer MA Identification and characterization of novel polymorphic LINE-1 insertions through comparison of two human genome sequence assemblies GENE. 2007 APR 1; 390 (1-2): 28-38	2	3	31	75
2305	5809 Herke SW, Xing J, Ray DA, Zimmerman JW, Cordaux R, et al. A SINE-based dichotomous key for primate identification GENE. 2007 APR 1; 390 (1-2): 39-51	2	4	12	59
2306	5812 Zhi DG Sequence correlation between neighboring Alu instances suggests post-retrotransposition sequence exchange due to Alu gene conversion GENE. 2007 APR 1; 390 (1-2): 117-121	2	4	5	14
2307	5815 Eller CD, Regelson M, Merriman B, Nelson S, Horvath S, et al. Repetitive sequence environment distinguishes housekeeping genes GENE. 2007 APR 1; 390 (1-2): 153-165	2	8	27	139
2308	5835 Iimura T, Pourquie O Hox genes in time and space during vertebrate body formation DEVELOPMENT GROWTH & DIFFERENTIATION. 2007 MAY; 49 (4): 265-275	2	21	1	66
2309	5930 Buzdin A, Gogvadze E, Lebrun MH Chimeric retrogenes suggest a role for the nucleolus in LINE amplification FEBS LETTERS. 2007 JUN 26; 581 (16): 2877-2882	2	4	22	57
2310	5945 Torkamani A, Schork NJ Distribution analysis of nonsynonymous polymorphisms within the human kinase gene family GENOMICS. 2007 JUL; 90 (1): 49-58	2	9	6	42
#	Date / Author / Journal	LCS	GCS	LCR	CR
2311	5953 Xu Z, Wang H LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons NUCLEIC ACIDS RESEARCH. 2007 JUL; 35: W265-W268	2	14	3	21
2312	5965 Vitte C, Panaud O, Quesneville H LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss BMC GENOMICS. 2007 JUL 6; 8: Art. No. 218	2	16	7	55
2313	6005 Januszyk K, Li PWL, Villareal V, Branciforte D, Wu H, et al. Identification and solution structure of a highly conserved C-terminal domain within ORF1p required for retrotransposition of long interspersed nuclear element-1 JOURNAL OF BIOLOGICAL CHEMISTRY. 2007 AUG 24; 282 (34): 24893-24904	2	3	13	70
2314	6013 Rognan D Chemogenomic approaches to rational drug design BRITISH JOURNAL OF PHARMACOLOGY. 2007 SEP; 152 (1): 38-52	2	33	6	90
2315	6031 Roy SW, Penny D Widespread intron loss suggests retrotransposon activity in ancient apicomplexans MOLECULAR BIOLOGY AND EVOLUTION. 2007 SEP; 24 (9): 1926-1933	2	10	4	42
2316	6034 Ichiyanagi K, Nishihara H, Duvernell DD, Okada N Acquisition of endonuclease specificity during evolution of L1 retrotransposon MOLECULAR BIOLOGY AND EVOLUTION. 2007 SEP; 24 (9): 2009-2015	2	3	20	44
2317	6049 Wildman DE, Uddin M, Opazo JC, Liu G, Lefort V, et al. Genomics, biogeography, and the diversification of placental mammals PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 SEP 4; 104 (36): 14395-14400	2	42	9	54
2318	6057 Gloriam DE, Fredriksson R, Schioth HB The G protein-coupled receptor subset of the rat genome BMC GENOMICS. 2007 SEP 25; 8: Art. No. 338	2	24	9	77
2319	6059 Kurakin A, Swistowski A, Wu SC, Bredesen DE The PDZ Domain as a Complex Adaptive System PLOS ONE. 2007 SEP 26; 2 (9): Art. No. e953	2	12	3	41
2320	6084 Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, et al. The diploid genome sequence of an individual human PLOS BIOLOGY. 2007 OCT; 5 (10): 2113-2144	2	15	33	106
#	Date / Author / Journal	LCS	GCS	LCR	CR
2321	6097 Wentzensen N, Coy JF, Knaebel HP, Linnebacher M, Wilzt B, et al. Expression of an endogenous retroviral sequence from the HERV-H group in gastrointestinal cancers INTERNATIONAL JOURNAL OF CANCER. 2007 OCT 1; 121 (7): 1417-1423	2	7	5	28
2322	6149 Stokowski RP, Pant PVK, Dadd T, Fereday A, Hinds DA, et al. A genomewide association study of skin pigmentation in a South Asian population AMERICAN JOURNAL OF HUMAN GENETICS. 2007 DEC; 81 (6): 1119-1132	2	23	3	55
2323	6168 Reichardt JKV Quo vadis, genoma? A call to pipettes for biochemists TRENDS IN BIOCHEMICAL SCIENCES. 2007 DEC; 32 (12): 529-530	2	2	4	10
2324	6192 Beauregard A, Curcio MJ, Belfort M The Take and Give Between Retrotransposable Elements and their Hosts ANNUAL REVIEW OF GENETICS. 2008; 42: 587-617	2	10	46	211
2325	6196 Kulkarni V, Errami M, Barber R, Garner HR Exhaustive prediction of disease susceptibility to coding base changes in the human genome BMC BIOINFORMATICS. 2008; 9: Art. No. S3	2	6	5	35
2326	6210 Urrutia AO, Ocana LB, Hurst LD Do Alu repeats drive the evolution of the primate transcriptome? GENOME BIOLOGY. 2008; 9 (2): Art. No. R25	2	6	31	75
2327	6268 Fang Y, Guo Y, Feng Y, Li M Predicting DNA-binding proteins: approached from Chou's pseudo amino acid composition and other specific sequence features AMINO ACIDS. 2008 JAN; 34 (1): 103-109	2	24	2	68
2328	6277 Iyer LM, Anantharaman V, Wolf MY, Aravind L Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes INTERNATIONAL JOURNAL FOR PARASITOLOGY. 2008 JAN; 38 (1): 1-31	2	24	6	185
2329	6280 Chen JM, Masson E, Macek M, Raguenes O, Piskackova T, et al. Detection of two Alu insertions in the CFTR gene JOURNAL OF CYSTIC FIBROSIS. 2008 JAN; 7 (1): 37-43	2	3	12	38
2330	6285 Leader B, Baca QJ, Golan DE Protein therapeutics: A summary and pharmacological classification NATURE REVIEWS DRUG DISCOVERY. 2008 JAN; 7 (1): 21-39	2	43	2	300
#	Date / Author / Journal	LCS	GCS	LCR	CR
2331	6286 Llorens C, Futami R, Bezemer D, Moya A The Gypsy Database (GyDB) of mobile genetic elements NUCLEIC ACIDS RESEARCH. 2008 JAN; 36: D38-D46	2	10	6	64
2332	6287 Levy A, Sela N, Ast G TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates NUCLEIC ACIDS RESEARCH. 2008 JAN; 36: D47-D52	2	5	17	41
2333	6288 Park J, Park B, Jung K, Jang S, Yu K, et al. CFGP: a web-based, comparative fungal genomics platform NUCLEIC ACIDS RESEARCH. 2008 JAN; 36: D562-D571	2	12	7	67
2334	6294 Kronmiller BA, Wise RP TEnest: Automated chronological annotation and visualization of nested plant transposable elements PLANT PHYSIOLOGY. 2008 JAN; 146 (1): 45-59	2	9	10	39
2335	6299 Graveley BR The haplo-spliceo-transcriptome: common variations in alternative splicing in the human population TRENDS IN GENETICS. 2008 JAN; 24 (1): 5-7	2	8	5	13
2336	6302 Novoyatleva T, Heinrich B, Tang Y, Benderska N, Butchbach MER, et al. Protein phosphatase 1 binds to the RNA recognition motif of several splicing factors and regulates alternative pre-mRNA processing HUMAN MOLECULAR GENETICS. 2008 JAN 1; 17 (1): 52-70	2	12	11	90
2337	6303 Rauch TA, Zhong XY, Wu XW, Wang M, Kernstine KH, et al. High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 JAN 8; 105 (1): 252-257	2	29	2	49
2338	6305 Munemasa M, Nikaido M, Nishihara H, Donnellan S, Austin CC, et al. Newly discovered young CORE-SINEs in marsupial genomes GENE. 2008 JAN 15; 407 (1-2): 176-185	2	3	7	33
2339	6315 Subirana JA, Messeguer X Structural families of genomic microsatellites GENE. 2008 JAN 31; 408 (1-2): 124-132	2	3	6	50
2340	6322 Dumont BL, Payseur BA Evolution of the genomic rate of recombination in mammals EVOLUTION. 2008 FEB; 62 (2): 276-294	2	3	9	116
#	Date / Author / Journal	LCS	GCS	LCR	CR
2341	6361 Breen M, Modiano JF Evolutionarily conserved cytogenetic changes in hematological malignancies of dogs and humans - man and his best friend share more than companionship CHROMOSOME RESEARCH. 2008 MAR; 16 (1): 145-154	2	13	3	34
2342	6402 Sinzelle L, Kapitonov VV, Grzela DP, Jursch T, Jurka J, et al. Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 MAR 25; 105 (12): 4715-4720	2	5	6	24
2343	6434 Einstein R, Jordan H, Zhou W, Brenner M, Moses EG, et al. Alternative splicing of the G protein-coupled receptor superfamily in human airway smooth muscle diversifies the complement of receptors PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 APR 1; 105 (13): 5230-5235	2	10	6	33
2344	6443 Piehler AP, Hellum M, Wenzel JJ, Kaminski E, Haug KBF, et al. The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference BMC GENOMICS. 2008 APR 11; 9: Art. No. 165	2	9	11	37
2345	6447 Copley RR The animal in the genome: comparative genomics and evolution PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. 2008 APR 27; 363 (1496): 1453-1461	2	5	20	88
2346	6455 Poeschla EM Integrase, LEDGF/p75 and HIV replication CELLULAR AND MOLECULAR LIFE SCIENCES. 2008 MAY; 65 (9): 1403-1424	2	14	13	206
2347	6477 Mattick JS, Mehler MF RNA editing, DNA recoding and the evolution of human cognition TRENDS IN NEUROSCIENCES. 2008 MAY; 31 (5): 227-233	2	17	8	81
2348	6491 Polavarapu N, Marino-Ramirez L, Landsman D, McDonald JF, Jordan IK Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA BMC GENOMICS. 2008 MAY 17; 9: Art. No. 226	2	7	18	40
2349	6516 Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, et al. A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach GENOME RESEARCH. 2008 JUN; 18 (6): 957-964	2	33	4	34
2350	6520 Mei D, Lewis R, Parrini E, Lazarou LP, Marini C, et al. High frequency of genomic deletions - and a duplication - in the LIS1 gene in lissencephaly: implications for molecular diagnosis JOURNAL OF MEDICAL GENETICS. 2008 JUN; 45 (6): 355-361	2	8	2	31
#	Date / Author / Journal	LCS	GCS	LCR	CR
2351	6526 Pihlak A, Bauren G, Hersoug E, Lonnerberg P, Metsis A, et al. Rapid genome sequencing with short universal tiling probes NATURE BIOTECHNOLOGY. 2008 JUN; 26 (6): 676-684	2	16	5	38
2352	6534 Schellenberg MJ, Ritchie DB, MacMillan AM Pre-mRNA splicing: a complex picture in higher definition TRENDS IN BIOCHEMICAL SCIENCES. 2008 JUN; 33 (6): 243-246	2	6	3	24
2353	6561 Holland LZ, Albalat R, Azumi K, Benito-Gutierrez E, Blow MJ, et al. The amphioxus genome illuminates vertebrate origins and cephalochordate biology GENOME RESEARCH. 2008 JUL; 18 (7): 1100-1111	2	62	11	88
2354	6564 Temtamy SA, Aglan MS, Valencia M, Cocchi G, Pacheco M, et al. Long interspersed nuclear element-1 (LINE1)-mediated deletion of EVC, EVC2, C4orf6, and STK32B in Ellis-van Creveld syndrome with borderline intelligence HUMAN MUTATION. 2008 JUL; 29 (7): 931-938	2	6	6	29
2355	6574 Chorley BN, Wang X, Campbell MR, Pittman GS, Noureddine MA, et al. Discovery and verification of functional single nucleotide polymorphisms in regulatory genomic regions: Current and developing technologies MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH. 2008 JUL-AUG; 659 (1-2): 147-157	2	10	6	109
2356	6575 She XW, Cheng Z, Zollner S, Church DM, Eichler EE Mouse segmental duplication and copy number variation NATURE GENETICS. 2008 JUL; 40 (7): 909-914	2	30	13	30
2357	6590 Guo J, Xu N, Li ZM, Zhang SL, Wu J, et al. Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 JUL 8; 105 (27): 9145-9150	2	10	4	31
2358	6612 Keeling PJ, Palmer JD Horizontal gene transfer in eukaryotic evolution NATURE REVIEWS GENETICS. 2008 AUG; 9 (8): 605-618	2	45	14	161
2359	6616 Gresham D, Kruglyak L Rise of the Machines PLOS GENETICS. 2008 AUG; 4 (8): Art. No. e1000134	2	2	2	16
2360	6633 Esnault C, Priet S, Ribet D, Heidmann O, Heidmann T Restriction by APOBEC3 proteins of endogenous retroviruses with an extracellular life cycle: ex vivo effects and in vivo "traces" on the murine IAPE and human HERV-K elements RETROVIROLOGY. 2008 AUG 14; 5: Art. No. 75	2	6	10	38
#	Date / Author / Journal	LCS	GCS	LCR	CR
2361	6683 Rosenkranz R, Borodina T, Lehrach H, Himmelbauer H Characterizing the mouse ES cell transcriptome with Illumina sequencing GENOMICS. 2008 OCT; 92 (4): 187-194	2	10	3	37
2362	6696 Phokaew C, Kowudtitham S, Subbalekha K, Shuangshoti S, Mutirangura A LINE-1 methylation patterns of different loci in normal and cancerous cells NUCLEIC ACIDS RESEARCH. 2008 OCT; 36 (17): 5704-5712	2	4	7	34
2363	6901 Chueh AC, Northrop EL, Brettingham-Moore KH, Choo KHA, Wong LH LINE Retrotransposon RNA Is an Essential Structural and Functional Epigenetic Component of a Core Neocentromeric Chromatin PLOS GENETICS. 2009 JAN; 5 (1): Art. No. e1000354	2	5	8	58
2364	6949 Visel A, Blow MJ, Li ZR, Zhang T, Akiyama JA, et al. ChIP-seq accurately predicts tissue-specific activity of enhancers NATURE. 2009 FEB 12; 457 (7231): 854-858	2	27	8	53
2365	6996 Comeaux MS, Roy-Engel AM, Hedges DJ, Deininger PL Diverse cis factors controlling Alu retrotransposition: What causes Alu elements to die? GENOME RESEARCH. 2009 APR; 19 (4): 545-555	2	3	22	46
2366	7009 Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM A census of human transcription factors: function, expression and evolution NATURE REVIEWS GENETICS. 2009 APR; 10 (4): 252-263	2	9	11	117
2367	7102 Kano H, Godoy I, Courtney C, Vetter MR, Gerton GL, et al. L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism GENES & DEVELOPMENT. 2009 JUN 1; 23 (11): 1303-1312	2	4	14	33
2368	7110 Gogvadze E, Stukacheva E, Buzdin A, Sverdlov E Human-Specific Modulation of Transcriptional Activity Provided by Endogenous Retroviral Insertions JOURNAL OF VIROLOGY. 2009 JUN 15; 83 (12): 6098-6105	2	2	23	44
2369	7195 Kim JI, Ju YS, Park H, Kim S, Lee S, et al. A highly annotated whole-genome sequence of a Korean individual NATURE. 2009 AUG 20; 460 (7258): 1011-U96	2	11	5	22
2370	7215 Pushkarev D, Neff NF, Quake SR Single-molecule sequencing of an individual human genome NATURE BIOTECHNOLOGY. 2009 SEP; 27 (9): 847-U101	2	14	7	22
#	Date / Author / Journal	LCS	GCS	LCR	CR
2371	7280 Damert A, Raiz J, Horn AV, Lower J, Wang H, et al. 5 '-Transducing SVA retrotransposon groups spread efficiently throughout the human genome GENOME RESEARCH. 2009 NOV; 19 (11): 1992-2008	2	2	23	56
2372	1 Shafer RH, Smirnov I Biological aspects of DNA/RNA quadruplexes BIOPOLYMERS. 2000; 56 (3): 209-227	1	31	2	145
2373	4 Sadee W, Hoeg E, Lucas J, Wang DX Genetic variations in human G protein-coupled receptors: Implications for drug therapy AAPS PHARMSCI. 2001; 3 (3): Art. No. 22	1	10	2	199
2374	5 Wess G, Urmann M, Sickenberger B Medicinal chemistry: Challenges and opportunities ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2001; 40 (18): 3341-+	1	62	2	69
2375	11 Ruddle F Hundred-year search for the human genome ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2001; 2: 1-8	1	3	1	34
2376	12 Tang CM, Moxon ER The impact of microbial genomics on antimicrobial drug development ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2001; 2: 259-269	1	9	2	39
2377	15 Yonekura H, Yasui K, Sakurai S, Li H, Yamamoto Y, et al. Antisense display: A new method for functional gene screen and its application to angiogenesis-related gene isolation ATHEROSCLEROSIS VI. 2001; 947: 382-386	1	3	2	11
2378	16 Ting AY, Witte K, Shah K, Kraybill B, Shokat KM, et al. Phage-display evolution of tyrosine kinases with altered nucleotide specificity BIOPOLYMERS. 2001; 60 (3): 220-228	1	15	2	19
2379	29 Danzmann RG, Gharbi K Gene mapping in fishes: a means to an end GENETICA. 2001; 111 (1-3): 3-23	1	32	2	74
2380	30 Devlin RH, Biagi CA, Smailus DE Genetic mapping of Y-chromosomal DNA markers in Pacific salmon GENETICA. 2001; 111 (1-3): 43-58	1	38	1	100
#	Date / Author / Journal	LCS	GCS	LCR	CR
2381	34 Rannala B, Bertorelle G Using linked markers to infer the age of a mutation HUMAN MUTATION. 2001; 18 (2): 87-100	1	22	2	55
2382	40 Mizutani M, Yamamoto T, Torii K, Kawase H, Yoshimoto T, et al. Analysis of 168 short tandem repeat loci in the Japanese population, using a screening set for human genetic mapping JOURNAL OF HUMAN GENETICS. 2001; 46 (8): 448-455	1	7	1	19
2383	41 Lesch KP Molecular foundation of anxiety disorders JOURNAL OF NEURAL TRANSMISSION. 2001; 108 (6): 717-746	1	20	1	154
2384	43 Riva A, Kohane IS A web-based tool to retrieve human genome polymorphisms from public databases JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION. 2001; : 558-562	1	0	1	10
2385	56 Varki A Loss of N-glycolylneuraminic acid in humans: Mechanisms, consequences, and implications for hominid evolution YEARBOOK OF PHYSICAL ANTHROPOLOGY, VOL 44. 2001; 44: 54-69	1	11	5	152
2386	81 Golub TR Genome-wide views of cancer. NEW ENGLAND JOURNAL OF MEDICINE. 2001 FEB 22; 344 (8): 601-602	1	36	2	7
2387	85 Sawyer TK Cancer - Emerging breakthrough drugs BIOTECHNIQUES. 2001 MAR; 30 (3): 626-+	1	4	2	10
2388	90 Rothberg BEG Mapping a role for SNPs in drug development NATURE BIOTECHNOLOGY. 2001 MAR; 19 (3): 209-211	1	8	1	11
2389	92 Little P The end of all human DNA maps? NATURE GENETICS. 2001 MAR; 27 (3): 229-230	1	3	4	13
2390	95 Almind K, Doria A, Kahn R Putting the genes for type II diabetes on the map NATURE MEDICINE. 2001 MAR; 7 (3): 277-279	1	61	1	31
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2391	99 Komajda M, Charron P The heart of genomics NATURE MEDICINE. 2001 MAR; 7 (3): 287-288	1	1	1	11
2392	104 Russo E Behind the sequence SCIENTIST. 2001 MAR 5; 15 (5): 1-+	1	0	4	5
2393	105 Smith CM Molecular modeling in the genomics era SCIENTIST. 2001 MAR 5; 15 (5): 24-25	1	1	2	13
2394	106 Koonin EV Computational genomics CURRENT BIOLOGY. 2001 MAR 6; 11 (5): R155-R158	1	7	2	10
2395	121 Hefti F From genes to effective drugs for neurological and psychiatric diseases TRENDS IN PHARMACOLOGICAL SCIENCES. 2001 APR; 22 (4): 159-160	1	2	1	5
2396	125 Szymkowski DE Too many targets, not enough target validation DRUG DISCOVERY TODAY. 2001 APR 15; 6 (8): 398-399	1	4	2	6
2397	127 Jackson IJ Mouse genomics: Making sense of the sequence CURRENT BIOLOGY. 2001 APR 17; 11 (8): R311-R314	1	2	3	11
2398	129 Meldrum DR Sequencing genomes and beyond SCIENCE. 2001 APR 20; 292 (5516): 515-+	1	9	2	22
2399	130 Gilson PR, McFadden GI Genome sequencing - A grin without a cat NATURE. 2001 APR 26; 410 (6832): 1040-1041	1	2	2	14
2400	135 Jones I, Craddock N Candidate gene studies of bipolar disorder ANNALS OF MEDICINE. 2001 MAY; 33 (4): 248-256	1	14	1	94

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LCS

GCS

LCR

2301

5759 Ray DA, Walker JA, Batzer MA

Mobile element-based forensic genomics

MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 2007 MAR 1; 616 (1-2): 24-33

109

2302

5785 Mevel-Ninio M, Pelisson A, Kinder J, Campos AR, Bucheton A

The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis

GENETICS. 2007 APR; 175 (4): 1615-1624

2303

5790 Meglecz E, Anderson SJ, Bourguet D, Butcher R, Caldas A, et al.

Microsatellite flanking region similarities among different loci within insect species

INSECT MOLECULAR BIOLOGY. 2007 APR; 16 (2): 175-185

2304

5808 Konkel MK, Wang JX, Liang P, Batzer MA

Identification and characterization of novel polymorphic LINE-1 insertions through comparison of two human genome sequence assemblies

GENE. 2007 APR 1; 390 (1-2): 28-38

2305

5809 Herke SW, Xing J, Ray DA, Zimmerman JW, Cordaux R, et al.

A SINE-based dichotomous key for primate identification

GENE. 2007 APR 1; 390 (1-2): 39-51

2306

5812 Zhi DG

Sequence correlation between neighboring Alu instances suggests post-retrotransposition sequence exchange due to Alu gene conversion

GENE. 2007 APR 1; 390 (1-2): 117-121

2307

5815 Eller CD, Regelson M, Merriman B, Nelson S, Horvath S, et al.

Repetitive sequence environment distinguishes housekeeping genes

GENE. 2007 APR 1; 390 (1-2): 153-165

139

2308

5835 Iimura T, Pourquie O

Hox genes in time and space during vertebrate body formation

DEVELOPMENT GROWTH & DIFFERENTIATION. 2007 MAY; 49 (4): 265-275

2309

5930 Buzdin A, Gogvadze E, Lebrun MH

Chimeric retrogenes suggest a role for the nucleolus in LINE amplification

FEBS LETTERS. 2007 JUN 26; 581 (16): 2877-2882

2310

5945 Torkamani A, Schork NJ

Distribution analysis of nonsynonymous polymorphisms within the human kinase gene family

GENOMICS. 2007 JUL; 90 (1): 49-58

Date / Author / Journal

LCS

GCS

LCR

2311

5953 Xu Z, Wang H

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

NUCLEIC ACIDS RESEARCH. 2007 JUL; 35: W265-W268

2312

5965 Vitte C, Panaud O, Quesneville H

LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

BMC GENOMICS. 2007 JUL 6; 8: Art. No. 218

2313

6005 Januszyk K, Li PWL, Villareal V, Branciforte D, Wu H, et al.

Identification and solution structure of a highly conserved C-terminal domain within ORF1p required for retrotransposition of long interspersed nuclear element-1

JOURNAL OF BIOLOGICAL CHEMISTRY. 2007 AUG 24; 282 (34): 24893-24904

2314

6013 Rognan D

Chemogenomic approaches to rational drug design

BRITISH JOURNAL OF PHARMACOLOGY. 2007 SEP; 152 (1): 38-52

2315

6031 Roy SW, Penny D

Widespread intron loss suggests retrotransposon activity in ancient apicomplexans

MOLECULAR BIOLOGY AND EVOLUTION. 2007 SEP; 24 (9): 1926-1933

2316

6034 Ichiyanagi K, Nishihara H, Duvernell DD, Okada N

Acquisition of endonuclease specificity during evolution of L1 retrotransposon

MOLECULAR BIOLOGY AND EVOLUTION. 2007 SEP; 24 (9): 2009-2015

2317

6049 Wildman DE, Uddin M, Opazo JC, Liu G, Lefort V, et al.

Genomics, biogeography, and the diversification of placental mammals

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 SEP 4; 104 (36): 14395-14400

2318

6057 Gloriam DE, Fredriksson R, Schioth HB

The G protein-coupled receptor subset of the rat genome

BMC GENOMICS. 2007 SEP 25; 8: Art. No. 338

2319

6059 Kurakin A, Swistowski A, Wu SC, Bredesen DE

The PDZ Domain as a Complex Adaptive System

PLOS ONE. 2007 SEP 26; 2 (9): Art. No. e953

2320

6084 Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, et al.

The diploid genome sequence of an individual human

PLOS BIOLOGY. 2007 OCT; 5 (10): 2113-2144

106

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GCS

LCR

2321

6097 Wentzensen N, Coy JF, Knaebel HP, Linnebacher M, Wilzt B, et al.

Expression of an endogenous retroviral sequence from the HERV-H group in gastrointestinal cancers

INTERNATIONAL JOURNAL OF CANCER. 2007 OCT 1; 121 (7): 1417-1423

2322

6149 Stokowski RP, Pant PVK, Dadd T, Fereday A, Hinds DA, et al.

A genomewide association study of skin pigmentation in a South Asian population

AMERICAN JOURNAL OF HUMAN GENETICS. 2007 DEC; 81 (6): 1119-1132

2323

6168 Reichardt JKV

Quo vadis, genoma? A call to pipettes for biochemists

TRENDS IN BIOCHEMICAL SCIENCES. 2007 DEC; 32 (12): 529-530

2324

6192 Beauregard A, Curcio MJ, Belfort M

The Take and Give Between Retrotransposable Elements and their Hosts

ANNUAL REVIEW OF GENETICS. 2008; 42: 587-617

211

2325

6196 Kulkarni V, Errami M, Barber R, Garner HR

Exhaustive prediction of disease susceptibility to coding base changes in the human genome

BMC BIOINFORMATICS. 2008; 9: Art. No. S3

2326

6210 Urrutia AO, Ocana LB, Hurst LD

Do Alu repeats drive the evolution of the primate transcriptome?

GENOME BIOLOGY. 2008; 9 (2): Art. No. R25

2327

6268 Fang Y, Guo Y, Feng Y, Li M

Predicting DNA-binding proteins: approached from Chou's pseudo amino acid composition and other specific sequence features

AMINO ACIDS. 2008 JAN; 34 (1): 103-109

2328

6277 Iyer LM, Anantharaman V, Wolf MY, Aravind L

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes

INTERNATIONAL JOURNAL FOR PARASITOLOGY. 2008 JAN; 38 (1): 1-31

185

2329

6280 Chen JM, Masson E, Macek M, Raguenes O, Piskackova T, et al.

Detection of two Alu insertions in the CFTR gene

JOURNAL OF CYSTIC FIBROSIS. 2008 JAN; 7 (1): 37-43

2330

6285 Leader B, Baca QJ, Golan DE

Protein therapeutics: A summary and pharmacological classification

NATURE REVIEWS DRUG DISCOVERY. 2008 JAN; 7 (1): 21-39

300

Date / Author / Journal

LCS

GCS

LCR

2331

6286 Llorens C, Futami R, Bezemer D, Moya A

The Gypsy Database (GyDB) of mobile genetic elements

NUCLEIC ACIDS RESEARCH. 2008 JAN; 36: D38-D46

2332

6287 Levy A, Sela N, Ast G

TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates

NUCLEIC ACIDS RESEARCH. 2008 JAN; 36: D47-D52

2333

6288 Park J, Park B, Jung K, Jang S, Yu K, et al.

CFGP: a web-based, comparative fungal genomics platform

NUCLEIC ACIDS RESEARCH. 2008 JAN; 36: D562-D571

2334

6294 Kronmiller BA, Wise RP

TEnest: Automated chronological annotation and visualization of nested plant transposable elements

PLANT PHYSIOLOGY. 2008 JAN; 146 (1): 45-59

2335

6299 Graveley BR

The haplo-spliceo-transcriptome: common variations in alternative splicing in the human population

TRENDS IN GENETICS. 2008 JAN; 24 (1): 5-7

2336

6302 Novoyatleva T, Heinrich B, Tang Y, Benderska N, Butchbach MER, et al.

Protein phosphatase 1 binds to the RNA recognition motif of several splicing factors and regulates alternative pre-mRNA processing

HUMAN MOLECULAR GENETICS. 2008 JAN 1; 17 (1): 52-70

2337

6303 Rauch TA, Zhong XY, Wu XW, Wang M, Kernstine KH, et al.

High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 JAN 8; 105 (1): 252-257

2338

6305 Munemasa M, Nikaido M, Nishihara H, Donnellan S, Austin CC, et al.

Newly discovered young CORE-SINEs in marsupial genomes

GENE. 2008 JAN 15; 407 (1-2): 176-185

2339

6315 Subirana JA, Messeguer X

Structural families of genomic microsatellites

GENE. 2008 JAN 31; 408 (1-2): 124-132

2340

6322 Dumont BL, Payseur BA

Evolution of the genomic rate of recombination in mammals

EVOLUTION. 2008 FEB; 62 (2): 276-294

116

Date / Author / Journal

LCS

GCS

LCR

2341

6361 Breen M, Modiano JF

Evolutionarily conserved cytogenetic changes in hematological malignancies of dogs and humans - man and his best friend share more than companionship

CHROMOSOME RESEARCH. 2008 MAR; 16 (1): 145-154

2342

6402 Sinzelle L, Kapitonov VV, Grzela DP, Jursch T, Jurka J, et al.

Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 MAR 25; 105 (12): 4715-4720

2343

6434 Einstein R, Jordan H, Zhou W, Brenner M, Moses EG, et al.

Alternative splicing of the G protein-coupled receptor superfamily in human airway smooth muscle diversifies the complement of receptors

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 APR 1; 105 (13): 5230-5235

2344

6443 Piehler AP, Hellum M, Wenzel JJ, Kaminski E, Haug KBF, et al.

The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference

BMC GENOMICS. 2008 APR 11; 9: Art. No. 165

2345

6447 Copley RR

The animal in the genome: comparative genomics and evolution

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. 2008 APR 27; 363 (1496): 1453-1461

2346

6455 Poeschla EM

Integrase, LEDGF/p75 and HIV replication

CELLULAR AND MOLECULAR LIFE SCIENCES. 2008 MAY; 65 (9): 1403-1424

206

2347

6477 Mattick JS, Mehler MF

RNA editing, DNA recoding and the evolution of human cognition

TRENDS IN NEUROSCIENCES. 2008 MAY; 31 (5): 227-233

2348

6491 Polavarapu N, Marino-Ramirez L, Landsman D, McDonald JF, Jordan IK

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

BMC GENOMICS. 2008 MAY 17; 9: Art. No. 226

2349

6516 Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, et al.

A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach

GENOME RESEARCH. 2008 JUN; 18 (6): 957-964

2350

6520 Mei D, Lewis R, Parrini E, Lazarou LP, Marini C, et al.

High frequency of genomic deletions - and a duplication - in the LIS1 gene in lissencephaly: implications for molecular diagnosis

JOURNAL OF MEDICAL GENETICS. 2008 JUN; 45 (6): 355-361

Date / Author / Journal

LCS

GCS

LCR

2351

6526 Pihlak A, Bauren G, Hersoug E, Lonnerberg P, Metsis A, et al.

Rapid genome sequencing with short universal tiling probes

NATURE BIOTECHNOLOGY. 2008 JUN; 26 (6): 676-684

2352

6534 Schellenberg MJ, Ritchie DB, MacMillan AM

Pre-mRNA splicing: a complex picture in higher definition

TRENDS IN BIOCHEMICAL SCIENCES. 2008 JUN; 33 (6): 243-246

2353

6561 Holland LZ, Albalat R, Azumi K, Benito-Gutierrez E, Blow MJ, et al.

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

GENOME RESEARCH. 2008 JUL; 18 (7): 1100-1111

2354

6564 Temtamy SA, Aglan MS, Valencia M, Cocchi G, Pacheco M, et al.

Long interspersed nuclear element-1 (LINE1)-mediated deletion of EVC, EVC2, C4orf6, and STK32B in Ellis-van Creveld syndrome with borderline intelligence

HUMAN MUTATION. 2008 JUL; 29 (7): 931-938

2355

6574 Chorley BN, Wang X, Campbell MR, Pittman GS, Noureddine MA, et al.

Discovery and verification of functional single nucleotide polymorphisms in regulatory genomic regions: Current and developing technologies

MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH. 2008 JUL-AUG; 659 (1-2): 147-157

109

2356

6575 She XW, Cheng Z, Zollner S, Church DM, Eichler EE

Mouse segmental duplication and copy number variation

NATURE GENETICS. 2008 JUL; 40 (7): 909-914

2357

6590 Guo J, Xu N, Li ZM, Zhang SL, Wu J, et al.

Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 JUL 8; 105 (27): 9145-9150

2358

6612 Keeling PJ, Palmer JD

Horizontal gene transfer in eukaryotic evolution

NATURE REVIEWS GENETICS. 2008 AUG; 9 (8): 605-618

161

2359

6616 Gresham D, Kruglyak L

Rise of the Machines

PLOS GENETICS. 2008 AUG; 4 (8): Art. No. e1000134

2360

6633 Esnault C, Priet S, Ribet D, Heidmann O, Heidmann T

Restriction by APOBEC3 proteins of endogenous retroviruses with an extracellular life cycle: ex vivo effects and in vivo "traces" on the murine IAPE and human HERV-K elements

RETROVIROLOGY. 2008 AUG 14; 5: Art. No. 75

Date / Author / Journal

LCS

GCS

LCR

2361

6683 Rosenkranz R, Borodina T, Lehrach H, Himmelbauer H

Characterizing the mouse ES cell transcriptome with Illumina sequencing

GENOMICS. 2008 OCT; 92 (4): 187-194

2362

6696 Phokaew C, Kowudtitham S, Subbalekha K, Shuangshoti S, Mutirangura A

LINE-1 methylation patterns of different loci in normal and cancerous cells

NUCLEIC ACIDS RESEARCH. 2008 OCT; 36 (17): 5704-5712

2363

6901 Chueh AC, Northrop EL, Brettingham-Moore KH, Choo KHA, Wong LH

LINE Retrotransposon RNA Is an Essential Structural and Functional Epigenetic Component of a Core Neocentromeric Chromatin

PLOS GENETICS. 2009 JAN; 5 (1): Art. No. e1000354

2364

6949 Visel A, Blow MJ, Li ZR, Zhang T, Akiyama JA, et al.

ChIP-seq accurately predicts tissue-specific activity of enhancers

NATURE. 2009 FEB 12; 457 (7231): 854-858

2365

6996 Comeaux MS, Roy-Engel AM, Hedges DJ, Deininger PL

Diverse cis factors controlling Alu retrotransposition: What causes Alu elements to die?

GENOME RESEARCH. 2009 APR; 19 (4): 545-555

2366

7009 Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM

A census of human transcription factors: function, expression and evolution

NATURE REVIEWS GENETICS. 2009 APR; 10 (4): 252-263

117

2367

7102 Kano H, Godoy I, Courtney C, Vetter MR, Gerton GL, et al.

L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism

GENES & DEVELOPMENT. 2009 JUN 1; 23 (11): 1303-1312

2368

7110 Gogvadze E, Stukacheva E, Buzdin A, Sverdlov E

Human-Specific Modulation of Transcriptional Activity Provided by Endogenous Retroviral Insertions

JOURNAL OF VIROLOGY. 2009 JUN 15; 83 (12): 6098-6105

2369

7195 Kim JI, Ju YS, Park H, Kim S, Lee S, et al.

A highly annotated whole-genome sequence of a Korean individual

NATURE. 2009 AUG 20; 460 (7258): 1011-U96

2370

7215 Pushkarev D, Neff NF, Quake SR

Single-molecule sequencing of an individual human genome

NATURE BIOTECHNOLOGY. 2009 SEP; 27 (9): 847-U101

Date / Author / Journal

LCS

GCS

LCR

2371

7280 Damert A, Raiz J, Horn AV, Lower J, Wang H, et al.

5 '-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

GENOME RESEARCH. 2009 NOV; 19 (11): 1992-2008

2372

1 Shafer RH, Smirnov I

Biological aspects of DNA/RNA quadruplexes

BIOPOLYMERS. 2000; 56 (3): 209-227

145

2373

4 Sadee W, Hoeg E, Lucas J, Wang DX

Genetic variations in human G protein-coupled receptors: Implications for drug therapy

AAPS PHARMSCI. 2001; 3 (3): Art. No. 22

199

2374

5 Wess G, Urmann M, Sickenberger B

Medicinal chemistry: Challenges and opportunities

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2001; 40 (18): 3341-+

2375

11 Ruddle F

Hundred-year search for the human genome

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2001; 2: 1-8

2376

12 Tang CM, Moxon ER

The impact of microbial genomics on antimicrobial drug development

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2001; 2: 259-269

2377

15 Yonekura H, Yasui K, Sakurai S, Li H, Yamamoto Y, et al.

Antisense display: A new method for functional gene screen and its application to angiogenesis-related gene isolation

ATHEROSCLEROSIS VI. 2001; 947: 382-386

2378

16 Ting AY, Witte K, Shah K, Kraybill B, Shokat KM, et al.

Phage-display evolution of tyrosine kinases with altered nucleotide specificity

BIOPOLYMERS. 2001; 60 (3): 220-228

2379

29 Danzmann RG, Gharbi K

Gene mapping in fishes: a means to an end

GENETICA. 2001; 111 (1-3): 3-23

2380

30 Devlin RH, Biagi CA, Smailus DE

Genetic mapping of Y-chromosomal DNA markers in Pacific salmon

GENETICA. 2001; 111 (1-3): 43-58

100

Date / Author / Journal

LCS

GCS

LCR

2381

34 Rannala B, Bertorelle G

Using linked markers to infer the age of a mutation

HUMAN MUTATION. 2001; 18 (2): 87-100

2382

40 Mizutani M, Yamamoto T, Torii K, Kawase H, Yoshimoto T, et al.

Analysis of 168 short tandem repeat loci in the Japanese population, using a screening set for human genetic mapping

JOURNAL OF HUMAN GENETICS. 2001; 46 (8): 448-455

2383

41 Lesch KP

Molecular foundation of anxiety disorders

JOURNAL OF NEURAL TRANSMISSION. 2001; 108 (6): 717-746

154

2384

43 Riva A, Kohane IS

A web-based tool to retrieve human genome polymorphisms from public databases

JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION. 2001; : 558-562

2385

56 Varki A

Loss of N-glycolylneuraminic acid in humans: Mechanisms, consequences, and implications for hominid evolution

YEARBOOK OF PHYSICAL ANTHROPOLOGY, VOL 44. 2001; 44: 54-69

152

2386

81 Golub TR

Genome-wide views of cancer.

NEW ENGLAND JOURNAL OF MEDICINE. 2001 FEB 22; 344 (8): 601-602

2387

85 Sawyer TK

Cancer - Emerging breakthrough drugs

BIOTECHNIQUES. 2001 MAR; 30 (3): 626-+

2388

90 Rothberg BEG

Mapping a role for SNPs in drug development

NATURE BIOTECHNOLOGY. 2001 MAR; 19 (3): 209-211

2389

92 Little P

The end of all human DNA maps?

NATURE GENETICS. 2001 MAR; 27 (3): 229-230

2390

95 Almind K, Doria A, Kahn R

Putting the genes for type II diabetes on the map

NATURE MEDICINE. 2001 MAR; 7 (3): 277-279

Date / Author / Journal

LCS

GCS

LCR

2391

99 Komajda M, Charron P

The heart of genomics

NATURE MEDICINE. 2001 MAR; 7 (3): 287-288

2392

104 Russo E

Behind the sequence

SCIENTIST. 2001 MAR 5; 15 (5): 1-+

2393

105 Smith CM

Molecular modeling in the genomics era

SCIENTIST. 2001 MAR 5; 15 (5): 24-25

2394

106 Koonin EV

Computational genomics

CURRENT BIOLOGY. 2001 MAR 6; 11 (5): R155-R158

2395

121 Hefti F

From genes to effective drugs for neurological and psychiatric diseases

TRENDS IN PHARMACOLOGICAL SCIENCES. 2001 APR; 22 (4): 159-160

2396

125 Szymkowski DE

Too many targets, not enough target validation

DRUG DISCOVERY TODAY. 2001 APR 15; 6 (8): 398-399

2397

127 Jackson IJ

Mouse genomics: Making sense of the sequence

CURRENT BIOLOGY. 2001 APR 17; 11 (8): R311-R314

2398

129 Meldrum DR

Sequencing genomes and beyond

SCIENCE. 2001 APR 20; 292 (5516): 515-+

2399

130 Gilson PR, McFadden GI

Genome sequencing - A grin without a cat

NATURE. 2001 APR 26; 410 (6832): 1040-1041

2400

135 Jones I, Craddock N

Candidate gene studies of bipolar disorder

ANNALS OF MEDICINE. 2001 MAY; 33 (4): 248-256

Initial sequencing and analysis of the human genome (Lander) The papers citing Lander ES, et al. "Initial sequencing and analysis of the human genome." NATURE. 2001 FEB 15; 409 (6822): 860-921	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 38623, GCS 253809, CR 422506 Collection span: 2000 - 2010
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