HistCite - Initial sequencing and analysis of the human genome (Lander)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
1401	4766 Zheng CL, Kwon YS, Li HR, Zhang K, Coutinho-Mansfield G, et al. MAASE: An alternative splicing database designed for supporting splicing microarray applications RNA-A PUBLICATION OF THE RNA SOCIETY. 2005 DEC; 11 (12): 1767-1776	4	12	11	29
1402	4841 Bergman CM, Quesneville H, Anxolabehere D, Ashburner M Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome GENOME BIOLOGY. 2006; 7 (11): Art. No. R112	4	28	12	93
1403	4842 Sironi M, Menozzi G, Comi GP, Cereda M, Cagliani R, et al. Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns GENOME BIOLOGY. 2006; 7 (12): Art. No. R120	4	7	22	64
1404	4846 Witherspoon DJ, Marchani EE, Watkins WS, Ostler CT, Wooding SP, et al. Human population genetic structure and diversity inferred from polymorphic L1 (LINE-1) and Alu insertions HUMAN HEREDITY. 2006; 62 (1): 30-46	4	14	21	92
1405	4879 Pichon JP, Bonnaud B, Cleuziat P, Mallet F Multiplex degenerate PCR coupled with an oligo sorbent array for human endogenous retrovirus expression profiling NUCLEIC ACIDS RESEARCH. 2006; 34 (6): Art. No. e46	4	9	11	55
1406	4882 Buzdin A, Kovalskaya-Alexandrova E, Gogvadze E, Sverdlov E GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats NUCLEIC ACIDS RESEARCH. 2006; 34 (9): Art. No. e67	4	9	20	44
1407	4886 Johnson R, Gamblin RJ, Ooi L, Bruce AW, Donaldson IJ, et al. Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication NUCLEIC ACIDS RESEARCH. 2006; 34 (14): 3862-3877	4	37	8	65
1408	4888 Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, et al. Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs NUCLEIC ACIDS RESEARCH. 2006; 34 (14): 3917-3928	4	19	14	44
1409	4902 Ahmadian A, Ehn M, Hober S Pyrosequencing: History, biochemistry and future CLINICA CHIMICA ACTA. 2006 JAN; 363 (1-2): 83-94	4	61	3	121
1410	4949 Sugano T, Kajikawa M, Okada N Isolation and characterization of retrotransposition-competent LINEs from zebrafish GENE. 2006 JAN 3; 365: 74-82	4	9	16	35
#	Date / Author / Journal	LCS	GCS	LCR	CR
1411	4978 Liang H, Landweber LF A genome-wide study of dual coding regions in human alternatively spliced genes GENOME RESEARCH. 2006 FEB; 16 (2): 190-196	4	15	4	22
1412	4986 Jern P, Sperber GO, Blomberg J Divergent patterns of recent retroviral integrations in the human and chimpanzee genomes: Probable transmissions between other primates and chimpanzees JOURNAL OF VIROLOGY. 2006 FEB; 80 (3): 1367-1375	4	9	10	61
1413	4987 Tan WJ, Dong Z, Wilkinson TA, Barbas CF, Chow SA Human immunodeficiency virus type 1 incorporated with fusion proteins consisting of integrase and the designed polydactyl zinc finger protein E2C can bias integration of viral DNA into a predetermined chromosomal region in human cells JOURNAL OF VIROLOGY. 2006 FEB; 80 (4): 1939-1948	4	21	3	64
1414	4989 Chatterji M, Tsai CL, Schatz DG Mobilization of RAG-generated signal ends by transposition and insertion in vivo MOLECULAR AND CELLULAR BIOLOGY. 2006 FEB; 26 (4): 1558-1568	4	16	3	57
1415	5020 Kuraku S, Ishijima J, Nishida-Umehara C, Agata K, Kuratani S, et al. cDNA-based gene mapping and GC(3) profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids CHROMOSOME RESEARCH. 2006 MAR; 14 (2): 187-202	4	12	10	59
1416	5060 Soares LMM, Valcarcel J The expanding transcriptome: the genome as the 'Book of Sand' EMBO JOURNAL. 2006 MAR 8; 25 (5): 923-931	4	33	18	107
1417	5122 Kislinger T, Cox B, Kannan A, Chung C, Hu PZ, et al. Global survey of organ and organelle protein expression in mouse: Combined proteomic and transcriptomic profiling CELL. 2006 APR 7; 125 (1): 173-186	4	145	6	50
1418	5130 Callinan PA, Feinberg AP The emerging science of epigenomics HUMAN MOLECULAR GENETICS. 2006 APR 15; 15: R95-R101	4	51	5	51
1419	5155 Yang HP, Hung TL, You TL, Yang TH Genomewide comparative analysis of the highly abundant transposable element DINE-1 suggests a recent transpositional burst in Drosophila yakuba GENETICS. 2006 MAY; 173 (1): 189-196	4	14	10	45
1420	5168 Innan H, Watanabe H The effect of gene flow on the coalescent time in the human-chimpanzee ancestral population MOLECULAR BIOLOGY AND EVOLUTION. 2006 MAY; 23 (5): 1040-1047	4	19	5	55
#	Date / Author / Journal	LCS	GCS	LCR	CR
1421	5220 Warren RL, Varabei D, Platt D, Huang X, Messina D, et al. Physical map-assisted whole-genome shotgun sequence assemblies GENOME RESEARCH. 2006 JUN; 16 (6): 768-775	4	10	10	35
1422	5251 Kim DS, Kim TH, Huh JW, Kim IC, Kim SW, et al. LINE FUSION GENES: a database of LINE expression in human genes BMC GENOMICS. 2006 JUN 7; 7: Art. No. 139	4	6	4	29
1423	5261 Kondrashov FA, Ogurtsov AY, Kondrashov AS Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites JOURNAL OF THEORETICAL BIOLOGY. 2006 JUN 21; 240 (4): 616-626	4	20	14	96
1424	5266 Wang GL, Vasquez KM Non-B DNA structure-induced genetic instability MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 2006 JUN 25; 598 (1-2): 103-119	4	45	1	183
1425	5291 Koga A, Iida A, Hori H, Shimada A, Shima A Vertebrate DNA transposon as a natural mutator: The Medaka fish Tol2 element contributes to genetic variation without recognizable traces MOLECULAR BIOLOGY AND EVOLUTION. 2006 JUL; 23 (7): 1414-1419	4	6	2	28
1426	5334 Barr SD, Ciuffi A, Leipzig J, Shinn P, Ecker JR, et al. HIV integration site selection: Targeting in macrophages and the effects of different routes of viral entry MOLECULAR THERAPY. 2006 AUG; 14 (2): 218-225	4	18	8	42
1427	5362 Bjarnadottir TK, Gloriam DE, Hellstrand SH, Kristiansson H, Fredriksson R, et al. Comprehensive repertoire and phylogenetic analysis of the G protein-coupled receptors in human and mouse GENOMICS. 2006 SEP; 88 (3): 263-273	4	29	13	40
1428	5373 Semon M, Duret L Evolutionary origin and maintenance of coexpressed gene clusters in mammals MOLECULAR BIOLOGY AND EVOLUTION. 2006 SEP; 23 (9): 1715-1723	4	31	8	30
1429	5419 Abrusan G, Krambeck HJ The distribution of L1 and Alu retroelements in relation to GC content on human sex chromosomes is consistent with the ectopic recombination model JOURNAL OF MOLECULAR EVOLUTION. 2006 OCT; 63 (4): 484-492	4	9	21	51
1430	5431 Yura K, Shionyu M, Hagino K, Hijikata A, Hirashima Y, et al. Alternative splicing in human transcriptome: Functional and structural influence on proteins GENE. 2006 OCT 1; 380 (2): 63-71	4	17	9	42
#	Date / Author / Journal	LCS	GCS	LCR	CR
1431	5468 Abrusan G, Krambeck HJ Competition may determine the diversity of transposable elements THEORETICAL POPULATION BIOLOGY. 2006 NOV; 70 (3): 364-375	4	8	16	65
1432	5507 Hong X, Scofield DG, Lynch M Intron size, abundance, and distribution within untranslated regions of genes MOLECULAR BIOLOGY AND EVOLUTION. 2006 DEC; 23 (12): 2392-2404	4	28	13	92
1433	5526 Birtle Z, Ponting CP Meisetz and the birth of the KRAB motif BIOINFORMATICS. 2006 DEC 1; 22 (23): 2841-2845	4	10	8	42
1434	5682 Waters PD, Dobigny G, Waddell PJ, Robinson TJ Evolutionary History of LINE-1 in the Major Clades of Placental Mammals PLOS ONE. 2007 JAN 17; 2 (1): Art. No. e158	4	17	8	43
1435	5757 Smith CD, Edgar RC, Yandell MD, Smith DR, Celniker SE, et al. Improved repeat identification and masking in Dipterans GENE. 2007 MAR 1; 389 (1): 1-9	4	8	11	49
1436	5760 Hedges DJ, Deininger PL Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 2007 MAR 1; 616 (1-2): 46-59	4	16	35	95
1437	5807 Lee J, Cordaux R, Han KD, Wang JX, Hedges DJ, et al. Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons GENE. 2007 APR 1; 390 (1-2): 18-27	4	5	24	53
1438	5811 Belancio VP, Whelton M, Deininger P Requirements for polyadenylation at the 3 ' end of LINE-1 elements GENE. 2007 APR 1; 390 (1-2): 98-107	4	3	11	38
1439	5813 Lebedev YB, Amosova AL, Mamedov IZ, Fisunov GY, Sverdlov ED Most recent AluY insertions in human gene introns reduce the content of the primary transcripts in a cell type specific manner GENE. 2007 APR 1; 390 (1-2): 122-129	4	4	12	28
1440	5821 Tamura M, Kajikawa M, Okada N Functional splice sites in a zebrafish LINE and their influence on zebrafish gene expression GENE. 2007 APR 1; 390 (1-2): 221-231	4	6	13	44
#	Date / Author / Journal	LCS	GCS	LCR	CR
1441	5862 Hall N Advanced sequencing technologies and their wider impact in microbiology JOURNAL OF EXPERIMENTAL BIOLOGY. 2007 MAY 1; 210 (9): 1518-1525	4	43	5	51
1442	5910 Sen SK, Huang CT, Han K, Batzer MA Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome NUCLEIC ACIDS RESEARCH. 2007 JUN; 35 (11): 3741-3751	4	11	22	65
1443	5955 Das D, Clark TA, Schweitzer A, Yamamoto M, Marr H, et al. A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing NUCLEIC ACIDS RESEARCH. 2007 JUL; 35 (14): 4845-4857	4	24	9	64
1444	5967 Duboule D The rise and fall of Hox gene clusters DEVELOPMENT. 2007 JUL 15; 134 (14): 2549-2560	4	58	1	73
1445	5992 Casola C, Lawing AM, Betran E, Feschotte C PIF-like Transposons are common in Drosophila and have been repeatedly domesticated to generate new host genes MOLECULAR BIOLOGY AND EVOLUTION. 2007 AUG; 24 (8): 1872-1888	4	13	5	60
1446	6006 Piriyapongsa J, Polavarapu N, Borodovsky M, McDonald J Exonization of the LTR transposable elements in human genome BMC GENOMICS. 2007 AUG 28; 8: Art. No. 291	4	9	12	37
1447	6055 Zhang CL, Hastings ML, Krainer AR, Zhang MQ Dual-specificity splice sites function alternatively as 5 ' and 3 ' splice sites PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 SEP 18; 104 (38): 15028-15033	4	8	9	34
1448	6076 Katzourakis A, Pereira V, Tristem M Effects of recombination rate on human endogenous retrovirus fixation and persistence JOURNAL OF VIROLOGY. 2007 OCT; 81 (19): 10712-10717	4	6	14	53
1449	6100 Roman Y, Oshige M, Lee YJ, Goodwin K, Georgiadis MM, et al. Biochemical characterization of a SET and transposase fusion protein, metnase: its DNA binding and DNA cleavage activity BIOCHEMISTRY. 2007 OCT 9; 46 (40): 11369-11376	4	9	5	30
1450	6212 McGuire AM, Pearson MD, Neafsey DE, Galagan JE Cross-kingdom patterns of alternative splicing and splice recognition GENOME BIOLOGY. 2008; 9 (3): Art. No. R50	4	8	20	86
#	Date / Author / Journal	LCS	GCS	LCR	CR
1451	6275 Abrusan G, Krambeck HJ, Junier T, Giordano J, Warburton PE Biased distributions and decay of long interspersed nuclear elements in the chicken genome GENETICS. 2008 JAN; 178 (1): 573-581	4	5	20	48
1452	6331 Boller K, Schoenfeld K, Lischer S, Fischer N, Hoffmann A, et al. Human endogenous retrovirus HERV-K113 is capable of producing intact viral particles JOURNAL OF GENERAL VIROLOGY. 2008 FEB; 89: 567-572	4	11	6	26
1453	6425 Gresham D, Dunham MJ, Botstein D Comparing whole genomes using DNA microarrays NATURE REVIEWS GENETICS. 2008 APR; 9 (4): 291-302	4	27	11	112
1454	6460 Ray DA, Feschotte C, Pagan HJT, Smith JD, Pritham EJ, et al. Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus GENOME RESEARCH. 2008 MAY; 18 (5): 717-728	4	7	14	43
1455	6543 Chen LL, DeCerbo JN, Carmichael GG Alu element-mediated gene silencing EMBO JOURNAL. 2008 JUN 18; 27 (12): 1694-1705	4	17	10	47
1456	6682 Bacolla A, Larson JE, Collins JR, Li J, Milosavljevic A, et al. Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties GENOME RESEARCH. 2008 OCT; 18 (10): 1545-1553	4	11	3	57
1457	6698 Lin L, Shen SH, Tye A, Cai JJ, Jiang P, et al. Diverse Splicing Patterns of Exonized Alu Elements in Human Tissues PLOS GENETICS. 2008 OCT; 4 (10): Art. No. e1000225	4	6	24	70
1458	6750 Miller W, Drautz DI, Ratan A, Pusey B, Qi J, et al. Sequencing the nuclear genome of the extinct woolly mammoth NATURE. 2008 NOV 20; 456 (7220): 387-U51	4	21	14	38
1459	6792 Han KD, Lee JN, Meyer TJ, Remedios P, Goodwin L, et al. L1 recombination-associated deletions generate human genomic variation PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 DEC 9; 105 (49): 19366-19371	4	10	13	36
1460	7008 Frazer KA, Murray SS, Schork NJ, Topol EJ Human genetic variation and its contribution to complex traits NATURE REVIEWS GENETICS. 2009 APR; 10 (4): 241-251	4	39	13	132
#	Date / Author / Journal	LCS	GCS	LCR	CR
1461	22 Maquat LE, Serin G Nonsense-mediated mRNA decay: Insights into mechanism from the cellular abundance of human Upf1, Upf2, Upf3, and Upf3X proteins COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY. 2001; 66: 313-320	3	9	3	69
1462	89 Bailey D, Zanders E, Dean P The end of the beginning for genomic medicine NATURE BIOTECHNOLOGY. 2001 MAR; 19 (3): 207-209	3	10	1	11
1463	93 Burge CB Chipping away at the transcriptome NATURE GENETICS. 2001 MAR; 27 (3): 232-234	3	12	1	15
1464	97 Liggett SB Pharmacogenetic applications of the Human Genome Project NATURE MEDICINE. 2001 MAR; 7 (3): 281-283	3	37	1	10
1465	102 Fauci AS Infectious diseases: Considerations for the 21st century CLINICAL INFECTIOUS DISEASES. 2001 MAR 1; 32 (5): 675-685	3	75	2	59
1466	131 Nagase T, Nakayama M, Nakajima D, Kikuno R, Ohara O Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro DNA RESEARCH. 2001 APR 27; 8 (2): 85-95	3	61	2	28
1467	133 Mathew C Science medicine and the future - Postgenomic technologies: hunting the genes for common disorders BRITISH MEDICAL JOURNAL. 2001 APR 28; 322 (7293): 1031-1034	3	24	2	21
1468	142 Green ED, Chakravarti A The human genome sequence expedition: Views from the "Base Camp" GENOME RESEARCH. 2001 MAY; 11 (5): 645-651	3	11	9	27
1469	156 Wouters FS, Verveer PJ, Bastiaens PIH Imaging biochemistry inside cells TRENDS IN CELL BIOLOGY. 2001 MAY; 11 (5): 203-211	3	224	2	68
1470	162 Messing J Do plants have more genes than humans? TRENDS IN PLANT SCIENCE. 2001 MAY; 6 (5): 195-196	3	7	2	10
#	Date / Author / Journal	LCS	GCS	LCR	CR
1471	185 Crocker PR, Varki A Siglecs in the immune system IMMUNOLOGY. 2001 JUN; 103 (2): 137-145	3	115	1	84
1472	220 Golub TR Genomic approaches to the pathogenesis of hematologic malignancy CURRENT OPINION IN HEMATOLOGY. 2001 JUL; 8 (4): 252-261	3	16	2	39
1473	240 Hartmann AM, Rujescu D, Giannakouros T, Nikolakaki E, Goedert M, et al. Regulation of alternative splicing of human tau exon 10 by phosphorylation of splicing factors MOLECULAR AND CELLULAR NEUROSCIENCE. 2001 JUL; 18 (1): 80-90	3	34	1	98
1474	244 White KP Functional genomics and the study of development, variation and evolution NATURE REVIEWS GENETICS. 2001 JUL; 2 (7): 528-537	3	29	1	79
1475	249 Das M, Harvey I, Chu LL, Sinha M, Pelletier J Full-length cDNAs: more than just reaching the ends PHYSIOLOGICAL GENOMICS. 2001 JUL; 6 (2): 57-80	3	26	2	167
1476	263 Young P, Ehler E, Gautel M Obscurin, a giant sarcomeric Rho guanine nucleotide exchange factor protein involved in sarcomere assembly JOURNAL OF CELL BIOLOGY. 2001 JUL 9; 154 (1): 123-136	3	117	1	75
1477	304 Huang S Genomics, complexity and drug discovery: insights from Boolean network models of cellular regulation PHARMACOGENOMICS. 2001 AUG; 2 (3): 203-222	3	35	2	91
1478	324 de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, et al. Initial sequencing and analysis of the human genome (vol 409, pg 860, 2001) NATURE. 2001 AUG 2; 412 (6846): 565-566	3	6	3	9
1479	344 Nagase T, Kikuno R, Ohara O Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins DNA RESEARCH. 2001 AUG 31; 8 (4): 179-187	3	16	3	25
1480	368 Glusman G, Rowen L, Lee I, Boysen C, Roach JC, et al. Comparative genomics of the human and mouse T cell receptor loci IMMUNITY. 2001 SEP; 15 (3): 337-349	3	70	2	36
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1481	383 Vladutiu GD Heterozygosity: An expanding role in proteomics MOLECULAR GENETICS AND METABOLISM. 2001 SEP-OCT; 74 (1-2): 51-63	3	17	2	50
1482	389 Kim SK HTTP ://C-elegans: Mining the functional genomic landscape NATURE REVIEWS GENETICS. 2001 SEP; 2 (9): 681-689	3	13	2	58
1483	393 Qian Q, Keeling PJ Diplonemid glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and prokaryote-to-eukaryote and lateral gene transfer PROTIST. 2001 SEP; 152 (3): 193-201	3	22	1	36
1484	400 Peri S, Ibarrola N, Blagoev B, Mann M, Pandey A Common pitfalls in bioinformatics-based analyses: look before you leap TRENDS IN GENETICS. 2001 SEP; 17 (9): 541-545	3	8	2	16
1485	416 Faber BCG, Cleutjens KBJM, Niessen RLJ, Aarts PLJW, Boon W, et al. Identification of genes potentially involved in rupture of human atherosclerotic plaques CIRCULATION RESEARCH. 2001 SEP 14; 89 (6): 547-554	3	78	2	30
1486	418 Langbein L, Rogers MA, Winter H, Praetzel S, Schweizer J The catalog of human hair keratins - II. Expression of the six type II members in the hair follicle and the combined catalog of human type I and II keratins JOURNAL OF BIOLOGICAL CHEMISTRY. 2001 SEP 14; 276 (37): 35123-35132	3	123	1	45
1487	435 Pirmohamed M Pharmacogenetics and pharmacogenomics BRITISH JOURNAL OF CLINICAL PHARMACOLOGY. 2001 OCT; 52 (4): 345-347	3	21	2	24
1488	443 Brummendorf T, Lemmon V Immunoglobulin superfamily receptors: cis-interactions, intracellular adapters and alternative splicing regulate adhesion CURRENT OPINION IN CELL BIOLOGY. 2001 OCT; 13 (5): 611-618	3	53	2	70
1489	447 Pisarchik A, Slominski AT Alternative splicing of CRH-R1 receptors in human and mouse skin: identification of new variants and their differential expression FASEB JOURNAL. 2001 OCT; 15 (12): 2754-+	3	89	2	46
1490	458 Rogers J, Bradley A The mouse genome sequence: Status and prospects GENOMICS. 2001 OCT; 77 (3): 117-118	3	5	2	3
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1491	469 Hagemann S, Pinsker W Drosophila P transposons in the human genome? MOLECULAR BIOLOGY AND EVOLUTION. 2001 OCT; 18 (10): 1979-1982	3	12	1	21
1492	483 Weir M, Swindells M, Overington J Insights into protein function through large-scale computational analysis of sequence and structure TRENDS IN BIOTECHNOLOGY. 2001 OCT; 19 (10): S61-S66	3	12	2	35
1493	511 Hamilton BA, Frankel WN Of mice and genome sequence CELL. 2001 OCT 5; 107 (1): 13-16	3	20	1	19
1494	519 Sturm RA, Teasdale RD, Box NF Human pigmentation genes: identification, structure and consequences of polymorphic variation GENE. 2001 OCT 17; 277 (1-2): 49-62	3	136	2	78
1495	546 Mitnik L, Novotny M, Felten C, Buonocore S, Koutny L, et al. Recent advances in DNA sequencing by capillary and microdevice electrophoresis ELECTROPHORESIS. 2001 NOV; 22 (19): 4104-4117	3	33	2	106
1496	589 Yaspo ML Taking a functional genomics approach in molecular medicine TRENDS IN MOLECULAR MEDICINE. 2001 NOV; 7 (11): 494-502	3	21	2	71
1497	592 Blackwell JM Genetics and genomics in infectious disease susceptibility TRENDS IN MOLECULAR MEDICINE. 2001 NOV; 7 (11): 521-526	3	34	2	47
1498	618 Kwok PY Genomics - Genetic association by whole-genome analysis? SCIENCE. 2001 NOV 23; 294 (5547): 1669-1670	3	17	2	5
1499	644 Comeron JM What controls the length of noncoding DNA? CURRENT OPINION IN GENETICS & DEVELOPMENT. 2001 DEC; 11 (6): 652-659	3	31	2	74
1500	659 Ponting CP, Mott R, Bork P, Copley RR Novel protein domains and repeats in Drosophila melanogaster: Insights into structure, function, and evolution GENOME RESEARCH. 2001 DEC; 11 (12): 1996-2008	3	34	1	91

Date / Author / Journal

LCS

GCS

LCR

1401

4766 Zheng CL, Kwon YS, Li HR, Zhang K, Coutinho-Mansfield G, et al.

MAASE: An alternative splicing database designed for supporting splicing microarray applications

RNA-A PUBLICATION OF THE RNA SOCIETY. 2005 DEC; 11 (12): 1767-1776

1402

4841 Bergman CM, Quesneville H, Anxolabehere D, Ashburner M

Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome

GENOME BIOLOGY. 2006; 7 (11): Art. No. R112

1403

4842 Sironi M, Menozzi G, Comi GP, Cereda M, Cagliani R, et al.

Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns

GENOME BIOLOGY. 2006; 7 (12): Art. No. R120

1404

4846 Witherspoon DJ, Marchani EE, Watkins WS, Ostler CT, Wooding SP, et al.

Human population genetic structure and diversity inferred from polymorphic L1 (LINE-1) and Alu insertions

HUMAN HEREDITY. 2006; 62 (1): 30-46

1405

4879 Pichon JP, Bonnaud B, Cleuziat P, Mallet F

Multiplex degenerate PCR coupled with an oligo sorbent array for human endogenous retrovirus expression profiling

NUCLEIC ACIDS RESEARCH. 2006; 34 (6): Art. No. e46

1406

4882 Buzdin A, Kovalskaya-Alexandrova E, Gogvadze E, Sverdlov E

GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats

NUCLEIC ACIDS RESEARCH. 2006; 34 (9): Art. No. e67

1407

4886 Johnson R, Gamblin RJ, Ooi L, Bruce AW, Donaldson IJ, et al.

Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication

NUCLEIC ACIDS RESEARCH. 2006; 34 (14): 3862-3877

1408

4888 Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, et al.

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs

NUCLEIC ACIDS RESEARCH. 2006; 34 (14): 3917-3928

1409

4902 Ahmadian A, Ehn M, Hober S

Pyrosequencing: History, biochemistry and future

CLINICA CHIMICA ACTA. 2006 JAN; 363 (1-2): 83-94

121

1410

4949 Sugano T, Kajikawa M, Okada N

Isolation and characterization of retrotransposition-competent LINEs from zebrafish

GENE. 2006 JAN 3; 365: 74-82

Date / Author / Journal

LCS

GCS

LCR

1411

4978 Liang H, Landweber LF

A genome-wide study of dual coding regions in human alternatively spliced genes

GENOME RESEARCH. 2006 FEB; 16 (2): 190-196

1412

4986 Jern P, Sperber GO, Blomberg J

Divergent patterns of recent retroviral integrations in the human and chimpanzee genomes: Probable transmissions between other primates and chimpanzees

JOURNAL OF VIROLOGY. 2006 FEB; 80 (3): 1367-1375

1413

4987 Tan WJ, Dong Z, Wilkinson TA, Barbas CF, Chow SA

Human immunodeficiency virus type 1 incorporated with fusion proteins consisting of integrase and the designed polydactyl zinc finger protein E2C can bias integration of viral DNA into a predetermined chromosomal region in human cells

JOURNAL OF VIROLOGY. 2006 FEB; 80 (4): 1939-1948

1414

4989 Chatterji M, Tsai CL, Schatz DG

Mobilization of RAG-generated signal ends by transposition and insertion in vivo

MOLECULAR AND CELLULAR BIOLOGY. 2006 FEB; 26 (4): 1558-1568

1415

5020 Kuraku S, Ishijima J, Nishida-Umehara C, Agata K, Kuratani S, et al.

cDNA-based gene mapping and GC(3) profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids

CHROMOSOME RESEARCH. 2006 MAR; 14 (2): 187-202

1416

5060 Soares LMM, Valcarcel J

The expanding transcriptome: the genome as the 'Book of Sand'

EMBO JOURNAL. 2006 MAR 8; 25 (5): 923-931

107

1417

5122 Kislinger T, Cox B, Kannan A, Chung C, Hu PZ, et al.

Global survey of organ and organelle protein expression in mouse: Combined proteomic and transcriptomic profiling

CELL. 2006 APR 7; 125 (1): 173-186

145

1418

5130 Callinan PA, Feinberg AP

The emerging science of epigenomics

HUMAN MOLECULAR GENETICS. 2006 APR 15; 15: R95-R101

1419

5155 Yang HP, Hung TL, You TL, Yang TH

Genomewide comparative analysis of the highly abundant transposable element DINE-1 suggests a recent transpositional burst in Drosophila yakuba

GENETICS. 2006 MAY; 173 (1): 189-196

1420

5168 Innan H, Watanabe H

The effect of gene flow on the coalescent time in the human-chimpanzee ancestral population

MOLECULAR BIOLOGY AND EVOLUTION. 2006 MAY; 23 (5): 1040-1047

Date / Author / Journal

LCS

GCS

LCR

1421

5220 Warren RL, Varabei D, Platt D, Huang X, Messina D, et al.

Physical map-assisted whole-genome shotgun sequence assemblies

GENOME RESEARCH. 2006 JUN; 16 (6): 768-775

1422

5251 Kim DS, Kim TH, Huh JW, Kim IC, Kim SW, et al.

LINE FUSION GENES: a database of LINE expression in human genes

BMC GENOMICS. 2006 JUN 7; 7: Art. No. 139

1423

5261 Kondrashov FA, Ogurtsov AY, Kondrashov AS

Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites

JOURNAL OF THEORETICAL BIOLOGY. 2006 JUN 21; 240 (4): 616-626

1424

5266 Wang GL, Vasquez KM

Non-B DNA structure-induced genetic instability

MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 2006 JUN 25; 598 (1-2): 103-119

183

1425

5291 Koga A, Iida A, Hori H, Shimada A, Shima A

Vertebrate DNA transposon as a natural mutator: The Medaka fish Tol2 element contributes to genetic variation without recognizable traces

MOLECULAR BIOLOGY AND EVOLUTION. 2006 JUL; 23 (7): 1414-1419

1426

5334 Barr SD, Ciuffi A, Leipzig J, Shinn P, Ecker JR, et al.

HIV integration site selection: Targeting in macrophages and the effects of different routes of viral entry

MOLECULAR THERAPY. 2006 AUG; 14 (2): 218-225

1427

5362 Bjarnadottir TK, Gloriam DE, Hellstrand SH, Kristiansson H, Fredriksson R, et al.

Comprehensive repertoire and phylogenetic analysis of the G protein-coupled receptors in human and mouse

GENOMICS. 2006 SEP; 88 (3): 263-273

1428

5373 Semon M, Duret L

Evolutionary origin and maintenance of coexpressed gene clusters in mammals

MOLECULAR BIOLOGY AND EVOLUTION. 2006 SEP; 23 (9): 1715-1723

1429

5419 Abrusan G, Krambeck HJ

The distribution of L1 and Alu retroelements in relation to GC content on human sex chromosomes is consistent with the ectopic recombination model

JOURNAL OF MOLECULAR EVOLUTION. 2006 OCT; 63 (4): 484-492

1430

5431 Yura K, Shionyu M, Hagino K, Hijikata A, Hirashima Y, et al.

Alternative splicing in human transcriptome: Functional and structural influence on proteins

GENE. 2006 OCT 1; 380 (2): 63-71

Date / Author / Journal

LCS

GCS

LCR

1431

5468 Abrusan G, Krambeck HJ

Competition may determine the diversity of transposable elements

THEORETICAL POPULATION BIOLOGY. 2006 NOV; 70 (3): 364-375

1432

5507 Hong X, Scofield DG, Lynch M

Intron size, abundance, and distribution within untranslated regions of genes

MOLECULAR BIOLOGY AND EVOLUTION. 2006 DEC; 23 (12): 2392-2404

1433

5526 Birtle Z, Ponting CP

Meisetz and the birth of the KRAB motif

BIOINFORMATICS. 2006 DEC 1; 22 (23): 2841-2845

1434

5682 Waters PD, Dobigny G, Waddell PJ, Robinson TJ

Evolutionary History of LINE-1 in the Major Clades of Placental Mammals

PLOS ONE. 2007 JAN 17; 2 (1): Art. No. e158

1435

5757 Smith CD, Edgar RC, Yandell MD, Smith DR, Celniker SE, et al.

Improved repeat identification and masking in Dipterans

GENE. 2007 MAR 1; 389 (1): 1-9

1436

5760 Hedges DJ, Deininger PL

Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity

MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 2007 MAR 1; 616 (1-2): 46-59

1437

5807 Lee J, Cordaux R, Han KD, Wang JX, Hedges DJ, et al.

Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons

GENE. 2007 APR 1; 390 (1-2): 18-27

1438

5811 Belancio VP, Whelton M, Deininger P

Requirements for polyadenylation at the 3 ' end of LINE-1 elements

GENE. 2007 APR 1; 390 (1-2): 98-107

1439

5813 Lebedev YB, Amosova AL, Mamedov IZ, Fisunov GY, Sverdlov ED

Most recent AluY insertions in human gene introns reduce the content of the primary transcripts in a cell type specific manner

GENE. 2007 APR 1; 390 (1-2): 122-129

1440

5821 Tamura M, Kajikawa M, Okada N

Functional splice sites in a zebrafish LINE and their influence on zebrafish gene expression

GENE. 2007 APR 1; 390 (1-2): 221-231

Date / Author / Journal

1441

Advanced sequencing technologies and their wider impact in microbiology

JOURNAL OF EXPERIMENTAL BIOLOGY. 2007 MAY 1; 210 (9): 1518-1525

1442

5910 Sen SK, Huang CT, Han K, Batzer MA

Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome

NUCLEIC ACIDS RESEARCH. 2007 JUN; 35 (11): 3741-3751

1443

5955 Das D, Clark TA, Schweitzer A, Yamamoto M, Marr H, et al.

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing

NUCLEIC ACIDS RESEARCH. 2007 JUL; 35 (14): 4845-4857

1444

5967 Duboule D

The rise and fall of Hox gene clusters

DEVELOPMENT. 2007 JUL 15; 134 (14): 2549-2560

1445

5992 Casola C, Lawing AM, Betran E, Feschotte C

PIF-like Transposons are common in Drosophila and have been repeatedly domesticated to generate new host genes

MOLECULAR BIOLOGY AND EVOLUTION. 2007 AUG; 24 (8): 1872-1888

1446

6006 Piriyapongsa J, Polavarapu N, Borodovsky M, McDonald J

Exonization of the LTR transposable elements in human genome

BMC GENOMICS. 2007 AUG 28; 8: Art. No. 291

1447

6055 Zhang CL, Hastings ML, Krainer AR, Zhang MQ

Dual-specificity splice sites function alternatively as 5 ' and 3 ' splice sites

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2007 SEP 18; 104 (38): 15028-15033

1448

6076 Katzourakis A, Pereira V, Tristem M

Effects of recombination rate on human endogenous retrovirus fixation and persistence

JOURNAL OF VIROLOGY. 2007 OCT; 81 (19): 10712-10717

1449

6100 Roman Y, Oshige M, Lee YJ, Goodwin K, Georgiadis MM, et al.

Biochemical characterization of a SET and transposase fusion protein, metnase: its DNA binding and DNA cleavage activity

BIOCHEMISTRY. 2007 OCT 9; 46 (40): 11369-11376

1450

6212 McGuire AM, Pearson MD, Neafsey DE, Galagan JE

Cross-kingdom patterns of alternative splicing and splice recognition

GENOME BIOLOGY. 2008; 9 (3): Art. No. R50

Date / Author / Journal

LCS

GCS

LCR

1451

6275 Abrusan G, Krambeck HJ, Junier T, Giordano J, Warburton PE

Biased distributions and decay of long interspersed nuclear elements in the chicken genome

GENETICS. 2008 JAN; 178 (1): 573-581

1452

6331 Boller K, Schoenfeld K, Lischer S, Fischer N, Hoffmann A, et al.

Human endogenous retrovirus HERV-K113 is capable of producing intact viral particles

JOURNAL OF GENERAL VIROLOGY. 2008 FEB; 89: 567-572

1453

6425 Gresham D, Dunham MJ, Botstein D

Comparing whole genomes using DNA microarrays

NATURE REVIEWS GENETICS. 2008 APR; 9 (4): 291-302

112

1454

6460 Ray DA, Feschotte C, Pagan HJT, Smith JD, Pritham EJ, et al.

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

GENOME RESEARCH. 2008 MAY; 18 (5): 717-728

1455

6543 Chen LL, DeCerbo JN, Carmichael GG

Alu element-mediated gene silencing

EMBO JOURNAL. 2008 JUN 18; 27 (12): 1694-1705

1456

6682 Bacolla A, Larson JE, Collins JR, Li J, Milosavljevic A, et al.

Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties

GENOME RESEARCH. 2008 OCT; 18 (10): 1545-1553

1457

6698 Lin L, Shen SH, Tye A, Cai JJ, Jiang P, et al.

Diverse Splicing Patterns of Exonized Alu Elements in Human Tissues

PLOS GENETICS. 2008 OCT; 4 (10): Art. No. e1000225

1458

6750 Miller W, Drautz DI, Ratan A, Pusey B, Qi J, et al.

Sequencing the nuclear genome of the extinct woolly mammoth

NATURE. 2008 NOV 20; 456 (7220): 387-U51

1459

6792 Han KD, Lee JN, Meyer TJ, Remedios P, Goodwin L, et al.

L1 recombination-associated deletions generate human genomic variation

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 DEC 9; 105 (49): 19366-19371

1460

7008 Frazer KA, Murray SS, Schork NJ, Topol EJ

Human genetic variation and its contribution to complex traits

NATURE REVIEWS GENETICS. 2009 APR; 10 (4): 241-251

132

Date / Author / Journal

LCS

GCS

LCR

1461

22 Maquat LE, Serin G

Nonsense-mediated mRNA decay: Insights into mechanism from the cellular abundance of human Upf1, Upf2, Upf3, and Upf3X proteins

COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY. 2001; 66: 313-320

1462

89 Bailey D, Zanders E, Dean P

The end of the beginning for genomic medicine

NATURE BIOTECHNOLOGY. 2001 MAR; 19 (3): 207-209

1463

93 Burge CB

Chipping away at the transcriptome

NATURE GENETICS. 2001 MAR; 27 (3): 232-234

1464

97 Liggett SB

Pharmacogenetic applications of the Human Genome Project

NATURE MEDICINE. 2001 MAR; 7 (3): 281-283

1465

102 Fauci AS

Infectious diseases: Considerations for the 21st century

CLINICAL INFECTIOUS DISEASES. 2001 MAR 1; 32 (5): 675-685

1466

131 Nagase T, Nakayama M, Nakajima D, Kikuno R, Ohara O

Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro

DNA RESEARCH. 2001 APR 27; 8 (2): 85-95

1467

133 Mathew C

Science medicine and the future - Postgenomic technologies: hunting the genes for common disorders

BRITISH MEDICAL JOURNAL. 2001 APR 28; 322 (7293): 1031-1034

1468

142 Green ED, Chakravarti A

The human genome sequence expedition: Views from the "Base Camp"

GENOME RESEARCH. 2001 MAY; 11 (5): 645-651

1469

156 Wouters FS, Verveer PJ, Bastiaens PIH

Imaging biochemistry inside cells

TRENDS IN CELL BIOLOGY. 2001 MAY; 11 (5): 203-211

224

1470

162 Messing J

Do plants have more genes than humans?

TRENDS IN PLANT SCIENCE. 2001 MAY; 6 (5): 195-196

Date / Author / Journal

LCS

GCS

LCR

1471

185 Crocker PR, Varki A

Siglecs in the immune system

IMMUNOLOGY. 2001 JUN; 103 (2): 137-145

115

1472

220 Golub TR

Genomic approaches to the pathogenesis of hematologic malignancy

CURRENT OPINION IN HEMATOLOGY. 2001 JUL; 8 (4): 252-261

1473

240 Hartmann AM, Rujescu D, Giannakouros T, Nikolakaki E, Goedert M, et al.

Regulation of alternative splicing of human tau exon 10 by phosphorylation of splicing factors

MOLECULAR AND CELLULAR NEUROSCIENCE. 2001 JUL; 18 (1): 80-90

1474

244 White KP

Functional genomics and the study of development, variation and evolution

NATURE REVIEWS GENETICS. 2001 JUL; 2 (7): 528-537

1475

249 Das M, Harvey I, Chu LL, Sinha M, Pelletier J

Full-length cDNAs: more than just reaching the ends

PHYSIOLOGICAL GENOMICS. 2001 JUL; 6 (2): 57-80

167

1476

263 Young P, Ehler E, Gautel M

Obscurin, a giant sarcomeric Rho guanine nucleotide exchange factor protein involved in sarcomere assembly

JOURNAL OF CELL BIOLOGY. 2001 JUL 9; 154 (1): 123-136

117

1477

304 Huang S

Genomics, complexity and drug discovery: insights from Boolean network models of cellular regulation

PHARMACOGENOMICS. 2001 AUG; 2 (3): 203-222

1478

324 de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, et al.

Initial sequencing and analysis of the human genome (vol 409, pg 860, 2001)

NATURE. 2001 AUG 2; 412 (6846): 565-566

1479

344 Nagase T, Kikuno R, Ohara O

Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins

DNA RESEARCH. 2001 AUG 31; 8 (4): 179-187

1480

368 Glusman G, Rowen L, Lee I, Boysen C, Roach JC, et al.

Comparative genomics of the human and mouse T cell receptor loci

IMMUNITY. 2001 SEP; 15 (3): 337-349

Date / Author / Journal

1481

Heterozygosity: An expanding role in proteomics

MOLECULAR GENETICS AND METABOLISM. 2001 SEP-OCT; 74 (1-2): 51-63

1482

389 Kim SK

HTTP ://C-elegans: Mining the functional genomic landscape

NATURE REVIEWS GENETICS. 2001 SEP; 2 (9): 681-689

1483

393 Qian Q, Keeling PJ

Diplonemid glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and prokaryote-to-eukaryote and lateral gene transfer

PROTIST. 2001 SEP; 152 (3): 193-201

1484

400 Peri S, Ibarrola N, Blagoev B, Mann M, Pandey A

Common pitfalls in bioinformatics-based analyses: look before you leap

TRENDS IN GENETICS. 2001 SEP; 17 (9): 541-545

1485

416 Faber BCG, Cleutjens KBJM, Niessen RLJ, Aarts PLJW, Boon W, et al.

Identification of genes potentially involved in rupture of human atherosclerotic plaques

CIRCULATION RESEARCH. 2001 SEP 14; 89 (6): 547-554

1486

418 Langbein L, Rogers MA, Winter H, Praetzel S, Schweizer J

The catalog of human hair keratins - II. Expression of the six type II members in the hair follicle and the combined catalog of human type I and II keratins

JOURNAL OF BIOLOGICAL CHEMISTRY. 2001 SEP 14; 276 (37): 35123-35132

123

1487

435 Pirmohamed M

Pharmacogenetics and pharmacogenomics

BRITISH JOURNAL OF CLINICAL PHARMACOLOGY. 2001 OCT; 52 (4): 345-347

1488

443 Brummendorf T, Lemmon V

Immunoglobulin superfamily receptors: cis-interactions, intracellular adapters and alternative splicing regulate adhesion

CURRENT OPINION IN CELL BIOLOGY. 2001 OCT; 13 (5): 611-618

1489

447 Pisarchik A, Slominski AT

Alternative splicing of CRH-R1 receptors in human and mouse skin: identification of new variants and their differential expression

FASEB JOURNAL. 2001 OCT; 15 (12): 2754-+

1490

458 Rogers J, Bradley A

The mouse genome sequence: Status and prospects

GENOMICS. 2001 OCT; 77 (3): 117-118

Date / Author / Journal

LCS

GCS

LCR

1491

469 Hagemann S, Pinsker W

Drosophila P transposons in the human genome?

MOLECULAR BIOLOGY AND EVOLUTION. 2001 OCT; 18 (10): 1979-1982

1492

483 Weir M, Swindells M, Overington J

Insights into protein function through large-scale computational analysis of sequence and structure

TRENDS IN BIOTECHNOLOGY. 2001 OCT; 19 (10): S61-S66

1493

511 Hamilton BA, Frankel WN

Of mice and genome sequence

CELL. 2001 OCT 5; 107 (1): 13-16

1494

519 Sturm RA, Teasdale RD, Box NF

Human pigmentation genes: identification, structure and consequences of polymorphic variation

GENE. 2001 OCT 17; 277 (1-2): 49-62

136

1495

546 Mitnik L, Novotny M, Felten C, Buonocore S, Koutny L, et al.

Recent advances in DNA sequencing by capillary and microdevice electrophoresis

ELECTROPHORESIS. 2001 NOV; 22 (19): 4104-4117

106

1496

589 Yaspo ML

Taking a functional genomics approach in molecular medicine

TRENDS IN MOLECULAR MEDICINE. 2001 NOV; 7 (11): 494-502

1497

592 Blackwell JM

Genetics and genomics in infectious disease susceptibility

TRENDS IN MOLECULAR MEDICINE. 2001 NOV; 7 (11): 521-526

1498

618 Kwok PY

Genomics - Genetic association by whole-genome analysis?

SCIENCE. 2001 NOV 23; 294 (5547): 1669-1670

1499

644 Comeron JM

What controls the length of noncoding DNA?

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2001 DEC; 11 (6): 652-659

1500

659 Ponting CP, Mott R, Bork P, Copley RR

Novel protein domains and repeats in Drosophila melanogaster: Insights into structure, function, and evolution

GENOME RESEARCH. 2001 DEC; 11 (12): 1996-2008

Initial sequencing and analysis of the human genome (Lander) The papers citing Lander ES, et al. "Initial sequencing and analysis of the human genome." NATURE. 2001 FEB 15; 409 (6822): 860-921	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 38623, GCS 253809, CR 422506 Collection span: 2000 - 2010
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