HistCite - Initial sequencing and analysis of the human genome (Lander)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
1101	1205 Bayat A Science, medicine, and the future - Bioinformatics BRITISH MEDICAL JOURNAL. 2002 APR 27; 324 (7344): 1018-1022	5	19	4	19
1102	1233 Mardis E, McPherson J, Martienssen R, Wilson RK, McCombie WR What is finished, and why does it matter GENOME RESEARCH. 2002 MAY; 12 (5): 669-671	5	14	3	12
1103	1236 Xie HQ, Wasserman A, Levine Z, Novik A, Grebinskiy V, et al. Large-scale protein annotation through gene ontology GENOME RESEARCH. 2002 MAY; 12 (5): 785-794	5	67	3	20
1104	1263 Agrafiotis DK, Lobanov VS, Salemme FR Combinatorial informatics in the post-genomics era NATURE REVIEWS DRUG DISCOVERY. 2002 MAY; 1 (5): 337-346	5	72	1	115
1105	1408 Cavaille J, Seitz H, Paulsen M, Ferguson-Smith AC, Bachellerie JP Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region HUMAN MOLECULAR GENETICS. 2002 JUN 15; 11 (13): 1527-1538	5	76	1	57
1106	1461 Payseur BA, Cutter AD, Nachman MW Searching for evidence of positive selection in the human genome using patterns of microsatellite variability MOLECULAR BIOLOGY AND EVOLUTION. 2002 JUL; 19 (7): 1143-1153	5	57	2	42
1107	1559 Kirk BW, Feinsod M, Favis R, Kliman RM, Barany F Single nucleotide polymorphism seeking long term association with complex disease NUCLEIC ACIDS RESEARCH. 2002 AUG 1; 30 (15): 3295-3311	5	107	7	162
1108	1616 Levy S, Hannenhalli S Identification of transcription factor binding sites in the human genome sequence MAMMALIAN GENOME. 2002 SEP; 13 (9): 510-514	5	41	3	28
1109	1651 Wang PJ, Page DC Functional substitution for TAF(II)250 by a retroposed homolog that is expressed in human spermatogenesis HUMAN MOLECULAR GENETICS. 2002 SEP 15; 11 (19): 2341-2346	5	36	2	32
1110	1802 Nachman MW Variation in recombination rate across the genome: evidence and implications CURRENT OPINION IN GENETICS & DEVELOPMENT. 2002 DEC; 12 (6): 657-663	5	65	6	55
#	Date / Author / Journal	LCS	GCS	LCR	CR
1111	1804 Lynch M, Richardson AO The evolution of spliceosomal introns CURRENT OPINION IN GENETICS & DEVELOPMENT. 2002 DEC; 12 (6): 701-710	5	80	5	115
1112	1849 Chin KV, Kong ANT Application of DNA Microarrays in pharmacogenomics and toxicogenomics PHARMACEUTICAL RESEARCH. 2002 DEC; 19 (12): 1773-1778	5	26	2	30
1113	1914 Hariri AR, Weinberger DR Imaging genomics BRITISH MEDICAL BULLETIN. 2003; 65: 259-270	5	125	1	43
1114	1950 Hayes H, Elduque C, Gautier M, Schibler L, Cribiu E, et al. Mapping of 195 genes in cattle and updated comparative map with man, mouse, rat and pig CYTOGENETIC AND GENOME RESEARCH. 2003; 102 (1-4): 16-24	5	27	3	38
1115	1962 Xuan ZY, Wang JH, Zhang MQ Computational comparison of two mouse draft genomes and the human golden path GENOME BIOLOGY. 2003; 4 (1): Art. No. R1	5	16	4	11
1116	1967 Szak ST, Pickeral OK, Landsman D, Boeke JD Identifying related L1 retrotransposons by analyzing 3 ' transduced sequences GENOME BIOLOGY. 2003; 4 (5): Art. No. R30	5	7	8	54
1117	1992 Durand D, Sankoff D Tests for gene clustering JOURNAL OF COMPUTATIONAL BIOLOGY. 2003; 10 (3-4): 453-482	5	34	10	81
1118	2058 van Driel MA, Cuelenaere K, Kemmeren PPCW, Leunissen JAM, Brunner HG A new web-based data mining tool for the identification of candidate genes for human genetic disorders EUROPEAN JOURNAL OF HUMAN GENETICS. 2003 JAN; 11 (1): 57-63	5	35	2	25
1119	2162 Cantile M, Procino A, D'Armiento M, Cindolo L, Cillo C HOX gene network is involved in the transcriptional regulation of in vivo human adipogenesis JOURNAL OF CELLULAR PHYSIOLOGY. 2003 FEB; 194 (2): 225-236	5	13	2	57
1120	2171 McCarty AS, Kleiger G, Eisenberg D, Smale ST Selective dimerization of a C2H2 zinc finger subfamily MOLECULAR CELL. 2003 FEB; 11 (2): 459-470	5	40	4	37
#	Date / Author / Journal	LCS	GCS	LCR	CR
1121	2198 Chanda SK, Caldwell JS Fulfilling the promise: drug discovery in the post-genomic era DRUG DISCOVERY TODAY. 2003 FEB 15; 8 (4): 168-174	5	42	4	52
1122	2210 Langkjaer RB, Cliften PF, Johnston M, Piskur J Yeast genome duplication was followed by asynchronous differentiation of duplicated genes NATURE. 2003 FEB 20; 421 (6925): 848-852	5	71	2	30
1123	2231 Navarro A, Barton NH Accumulating postzygotic isolation genes in parapatry: A new twist on chromosomal speciation EVOLUTION. 2003 MAR; 57 (3): 447-459	5	117	2	55
1124	2237 Chapman MA, Charchar FJ, Kinston S, Bird CP, Grafham D, et al. Comparative and functional analyses of LYL1 loci establish marsupial sequences as a model for phylogenetic footprinting GENOMICS. 2003 MAR; 81 (3): 249-259	5	20	1	53
1125	2257 Kanehisa M, Bork P Bioinformatics in the post-sequence era NATURE GENETICS. 2003 MAR; 33: 305-310	5	50	4	56
1126	2309 Liu RX, McEachin RC, States DJ Computationally identifying novel NF-kappa B-regulated immune genes in the human genome GENOME RESEARCH. 2003 APR; 13 (4): 654-661	5	26	4	67
1127	2551 Nahon JL Birth of 'human-specific' genes during primate evolution GENETICA. 2003 JUL; 118 (2-3): 193-208	5	23	16	117
1128	2568 Pennacchio LA Insights from human/mouse genome comparisons MAMMALIAN GENOME. 2003 JUL; 14 (7): 429-436	5	25	11	57
1129	2572 Nakai H, Montini E, Fuess S, Storm TA, Grompe M, et al. AAV serotype 2 vectors preferentially integrate into active genes in mice NATURE GENETICS. 2003 JUL; 34 (3): 297-302	5	151	5	29
1130	2589 Halees AS, Leyfer D, Weng ZP PromoSer: a large-scale mammalian promoter and transcription start site identification service NUCLEIC ACIDS RESEARCH. 2003 JUL 1; 31 (13): 3554-3559	5	36	11	37
#	Date / Author / Journal	LCS	GCS	LCR	CR
1131	2597 Bergthorsson U, Adams KL, Thomason B, Palmer JD Widespread horizontal transfer of mitochondrial genes in flowering plants NATURE. 2003 JUL 10; 424 (6945): 197-201	5	129	4	30
1132	2606 Zhang ZL, Gerstein M The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse GENE. 2003 JUL 17; 312: 61-72	5	19	6	39
1133	2640 Bajic VB, Seah SH Dragon Gene Start Finder: An advanced system for finding approximate locations of the start of gene transcriptional units GENOME RESEARCH. 2003 AUG; 13 (8): 1923-1929	5	26	6	32
1134	2656 Vienne A, Rasmussen J, Abi-Rached L, Pontarotti P, Gilles A Systematic phylogenomic evidence of en bloc duplication of the ancestral 8p11.21-8p21.3-like region MOLECULAR BIOLOGY AND EVOLUTION. 2003 AUG; 20 (8): 1290-1298	5	24	8	46
1135	2689 Kurland CG, Canback B, Berg OG Horizontal gene transfer: A critical view PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 AUG 19; 100 (17): 9658-9662	5	139	3	81
1136	2713 Engler FW, Hatfield J, Nelson W, Soderlund CA Locating sequence on FPC maps and selecting a minimal tiling path GENOME RESEARCH. 2003 SEP; 13 (9): 2152-2163	5	18	11	45
1137	2766 Mei R, Hubbell E, Bekiranov S, Mittmann M, Christians FC, et al. Probe selection for high-density oligonucleotide arrays PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 SEP 30; 100 (20): 11237-11242	5	74	2	17
1138	2827 Astolfi P, Bellizzi D, Sgaramella V Frequency and coverage of trinucleotide repeats in eukaryotes GENE. 2003 OCT 23; 317 (1-2): 117-125	5	13	5	48
1139	2828 Zhang CT, Zhang R An isochore map of the human genome based on the Z curve method GENE. 2003 OCT 23; 317 (1-2): 127-135	5	14	6	31
1140	2853 Nakamura A, Okazaki Y, Sugimoto J, Oda T, Jinno Y Human endogenous retroviruses with transcriptional potential in the brain JOURNAL OF HUMAN GENETICS. 2003 NOV; 48 (11): 575-581	5	11	1	50
#	Date / Author / Journal	LCS	GCS	LCR	CR
1141	2858 Maojo V, Kulikowski CA Bioinformatics and medical informatics: Collaborations on the road to genomic medicine? JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION. 2003 NOV-DEC; 10 (6): 515-522	5	26	2	62
1142	2879 Wen SY, Zhang CT Identification of isochore boundaries in the human genome using the technique of wavelet multiresolution analysis BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2003 NOV 7; 311 (1): 215-222	5	9	8	31
1143	2914 Copley RR, Goodstadt L, Ponting C Eukaryotic domain evolution inferred from genome comparisons CURRENT OPINION IN GENETICS & DEVELOPMENT. 2003 DEC; 13 (6): 623-628	5	18	30	47
1144	2946 Kinsella RJ, McInerney JO Eukaryotic genes in Mycobacterium tuberculosis? Possible alternative explanations TRENDS IN GENETICS. 2003 DEC; 19 (12): 687-689	5	8	3	15
1145	2996 Enard W, Paabo S Comparative primate genomics ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2004; 5: 351-378	5	37	32	153
1146	3045 Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, et al. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes GENOME BIOLOGY. 2004; 5 (2): Art. No. R7	5	117	12	133
1147	3054 Lee C, Roy M Analysis of alternative splicing with microarrays: successes and challenges GENOME BIOLOGY. 2004; 5 (7): Art. No. 231	5	32	11	27
1148	3058 Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, et al. Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura GENOME BIOLOGY. 2004; 5 (9): Art. No. R61	5	90	7	81
1149	3157 Matsumoto T, Takahashi H, Fujiwara H Targeted nuclear import of open reading frame 1 protein is required for in vivo retrotransposition of a telomere-specific non-long terminal repeat retrotransposon, SART1 MOLECULAR AND CELLULAR BIOLOGY. 2004 JAN; 24 (1): 105-122	5	7	4	39
1150	3169 Farley AH, Prak ETL, Kazazian HH More active human L1 retrotransposons produce longer insertions NUCLEIC ACIDS RESEARCH. 2004 JAN; 32 (2): 502-510	5	10	12	49
#	Date / Author / Journal	LCS	GCS	LCR	CR
1151	3171 Meyer IM, Durbin R Gene structure conservation aids similarity based gene prediction NUCLEIC ACIDS RESEARCH. 2004 JAN; 32 (2): 776-783	5	29	6	28
1152	3179 Ruan YJ, Le Ber P, Ng HH, Liu ET Interrogating the transcriptome TRENDS IN BIOTECHNOLOGY. 2004 JAN; 22 (1): 23-30	5	28	14	67
1153	3195 Bannasch D, Mehrle A, Glatting KH, Pepperkok R, Poustka A, et al. LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system NUCLEIC ACIDS RESEARCH. 2004 JAN 1; 32: D505-D508	5	25	6	21
1154	3243 Barry EG, Witherspoon DJ, Lampe DJ A bacterial genetic screen identifies functional coding sequences of the insect mariner transposable element Famar1 amplified from the genome of the earwig, Forficula auricularia GENETICS. 2004 FEB; 166 (2): 823-833	5	19	1	52
1155	3259 Gaudet F, Rideout WM, Meissner A, Dausman J, Leonhardt H, et al. Dnmt1 expression in pre-and postimplantation embryogenesis and the maintenance of IAP silencing MOLECULAR AND CELLULAR BIOLOGY. 2004 FEB; 24 (4): 1640-1648	5	36	4	45
1156	3266 Marino-Ramirez L, Spouge JL, Kanga GC, Landsman D Statistical analysis of over-represented words in human promoter sequences NUCLEIC ACIDS RESEARCH. 2004 FEB; 32 (3): 949-958	5	46	5	31
1157	3292 Malnic B, Godfrey PA, Buck LB The human olfactory receptor gene family PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 24; 101 (8): 2584-2589	5	100	3	36
1158	3370 Taylor MS, Ponting CP, Copley RR Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes GENOME RESEARCH. 2004 APR; 14 (4): 555-566	5	30	6	41
1159	3372 Chen R, Sodergren E, Weinstock GM, Gibbs RA Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project GENOME RESEARCH. 2004 APR; 14 (4): 679-684	5	6	6	13
1160	3377 Osoegawa K, Zhu BL, Shu CL, Ren T, Cao Q, et al. BAC resources for the rat genome project GENOME RESEARCH. 2004 APR; 14 (4): 780-785	5	13	4	23
#	Date / Author / Journal	LCS	GCS	LCR	CR
1161	3393 Beaumont MA, Rannala B The Bayesian revolution in genetics NATURE REVIEWS GENETICS. 2004 APR; 5 (4): 251-261	5	121	3	110
1162	3432 Cotrim NH, Auricchio MTBM, Vicente JP, Otto PA, Mingroni-Netto RC Polymorphic Alu insertions in six Brazilian African-derived populations AMERICAN JOURNAL OF HUMAN BIOLOGY. 2004 MAY-JUN; 16 (3): 264-277	5	8	2	51
1163	3447 Searle SMJ, Gilbert J, Iyer V, Clamp M The Otter annotation system GENOME RESEARCH. 2004 MAY; 14 (5): 963-970	5	17	8	14
1164	3565 Morey C, Avner P Employment opportunities for non-coding RNAs FEBS LETTERS. 2004 JUN 1; 567 (1): 27-34	5	49	6	58
1165	3566 Jasinska A, Krzyzosiak WJ Repetitive sequences that shape the human transcriptome FEBS LETTERS. 2004 JUN 1; 567 (1): 136-141	5	23	12	58
1166	3613 Franchini LF, Ganko EW, McDonald JF Retrotransposon-gene associations are widespread among D-melanogaster populations MOLECULAR BIOLOGY AND EVOLUTION. 2004 JUL; 21 (7): 1323-1331	5	24	7	42
1167	3614 Kudla G, Helwak A, Lipinski L Gene conversion and GC-content evolution in mammalian Hsp70 MOLECULAR BIOLOGY AND EVOLUTION. 2004 JUL; 21 (7): 1438-1444	5	19	8	39
1168	3641 Thomas EE, Srebro N, Sebat J, Navin N, Healy J, et al. Distribution of short paired duplications in mammalian genomes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JUL 13; 101 (28): 10349-10354	5	14	6	19
1169	3652 Suzuki M, Hayashizaki Y Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs BIOESSAYS. 2004 AUG; 26 (8): 833-843	5	27	22	115
1170	3727 Hattori N, Abe T, Hattori N, Suzuki M, Matsuyama T, et al. Preference of DNA methyltransferases for CpG islands in mouse embryonic stem cells GENOME RESEARCH. 2004 SEP; 14 (9): 1733-1740	5	41	5	45
#	Date / Author / Journal	LCS	GCS	LCR	CR
1171	3735 Wang QQ, Carmichael GG Effects of length and location on the cellular response to double-stranded RNA MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. 2004 SEP; 68 (3): 432-+	5	39	7	434
1172	3782 Warburton PE, Giordano J, Cheung F, Gelfand Y, Benson G Inverted repeat structure of the human genome: The X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes GENOME RESEARCH. 2004 OCT; 14 (10A): 1861-1869	5	52	8	38
1173	3803 Webster MT, Smith NGC, Lercher MJ, Ellegren H Gene expression, synteny, and local similarity in human noncoding mutation rates MOLECULAR BIOLOGY AND EVOLUTION. 2004 OCT; 21 (10): 1820-1830	5	21	18	47
1174	3870 Bajic VB, Tan SL, Suzuki Y, Sugano S Promoter prediction analysis on the whole human genome NATURE BIOTECHNOLOGY. 2004 NOV; 22 (11): 1467-1473	5	63	7	29
1175	3945 Wong LH, Choo KHA Evolutionary dynamics of transposable elements at the centromere TRENDS IN GENETICS. 2004 DEC; 20 (12): 611-616	5	18	9	50
1176	4031 Zingler N, Weichenrieder O, Schumann GG APE-type non-LTR retrotransposons: determinants involved in target site recognition CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 250-268	5	9	18	194
1177	4033 Brandt J, Veith AM, Volff JN A family of neofunctionalized Ty3/gypsy retrotransposon genes in mammalian genomes CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 307-317	5	15	20	78
1178	4038 Boissinot S, Furano AV The recent evolution of human L1 retrotransposons CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 402-406	5	7	12	36
1179	4153 Gupta S, Gallavotti A, Stryker GA, Schmidt RJ, Lal SK A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes PLANT MOLECULAR BIOLOGY. 2005 JAN; 57 (1): 115-127	5	32	3	42
1180	4315 Kalnina Z, Zayakin P, Silina K, Line A Alterations of pre-mRNA splicing in cancer GENES CHROMOSOMES & CANCER. 2005 APR; 42 (4): 342-357	5	85	17	106
#	Date / Author / Journal	LCS	GCS	LCR	CR
1181	4319 Itoh T, Watanabe T, Ihara N, Mariani P, Beattie CW, et al. A comprehensive radiation hybrid map of the bovine genome comprising 5593 loci GENOMICS. 2005 APR; 85 (4): 413-424	5	50	8	25
1182	4321 McClure MA, Richardson HS, Clinton RA, Hepp CM, Crowther BA, et al. Automated characterization of potentially active retroid agents in the human genome GENOMICS. 2005 APR; 85 (4): 512-523	5	8	6	56
1183	4329 Hammer SE, Strehl S, Hagemann S Homologs of Drosophila P transposons were mobile in zebrafish but have been domesticated in a common ancestor of chicken and human MOLECULAR BIOLOGY AND EVOLUTION. 2005 APR; 22 (4): 833-844	5	20	4	52
1184	4337 Li WT, Holste D Universal 1/f noise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome PHYSICAL REVIEW E. 2005 APR; 71 (4): Art. No. 041910	5	19	18	68
1185	4346 Dunn CA, Mager DL Transcription of the human and rodent SPAM1/PH-20 genes initiates within an ancient endogenous retrovirus BMC GENOMICS. 2005 APR 1; 6: Art. No. 47	5	6	11	42
1186	4351 Sinzelle L, Pollet N, Bigot Y, Mazabraud A Characterization of multiple lineages of Tc1-like elements within the genome of the amphibian Xenopus tropicalis GENE. 2005 APR 11; 349: 187-196	5	11	2	31
1187	4354 Gloriam DEI, Schioth HB, Fredriksson R Nine new human Rhodopsin family G-protein coupled receptors: Identification, sequence characterisation and evolutionary relationship BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS. 2005 APR 15; 1722 (3): 235-246	5	12	9	36
1188	4406 Eyras E, Reymond A, Castelo R, Bye JM, Camara F, et al. Gene finding in the chicken genome BMC BIOINFORMATICS. 2005 MAY 30; 6: Art. No. 131	5	17	11	33
1189	4454 Shen R, Fan JB, Campbell D, Chang WH, Chen J, et al. High-throughput SNP genotyping on universal bead arrays MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 2005 JUN 3; 573 (1-2): 70-82	5	92	5	24
1190	4482 Grover D, Kannan K, Brahmachari SK, Mukerji M ALU-ring elements in the primate genomes GENETICA. 2005 JUL; 124 (2): 273-289	5	9	10	111
#	Date / Author / Journal	LCS	GCS	LCR	CR
1191	4518 Schueler MG, Dunn JM, Bird CP, Ross MT, Viggiano L, et al. Progressive proximal expansion of the primate X chromosome centromere PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JUL 26; 102 (30): 10563-10568	5	22	8	58
1192	4549 Sandovici I, Kassovska-Bratinova S, Loredo-Osti JC, Leppert M, Suarez A, et al. Interindividual variability and parent of origin DNA methylation differences at specific human Alu elements HUMAN MOLECULAR GENETICS. 2005 AUG 1; 14 (15): 2135-2143	5	28	5	33
1193	4556 Jern P, Sperber GO, Blomberg J Use of Endogenous Retroviral Sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy RETROVIROLOGY. 2005 AUG 10; 2: Art. No. 50	5	14	6	57
1194	4571 Antonell A, de Luis O, Domingo-Roura X, Perez-Jurado LA Evolutionary mechanisms shaping the genomic structure of the Williams-Beuren syndrome chromosomal region at human 7q11.23 GENOME RESEARCH. 2005 SEP; 15 (9): 1179-1188	5	23	11	52
1195	4577 Moyes DL, Martin A, Sawcer S, Temperton N, Worthington J, et al. The distribution of the endogenous retroviruses HERV-K113 and HERV-K115 in health and disease GENOMICS. 2005 SEP; 86 (3): 337-341	5	21	7	31
1196	4605 Claverie JM Fewer genes, more noncoding RNA SCIENCE. 2005 SEP 2; 309 (5740): 1529-1530	5	61	5	18
1197	4613 Rogers YH, Venter JC Genomics - Massively parallel sequencing NATURE. 2005 SEP 15; 437 (7057): 326-327	5	31	3	9
1198	4616 Nusbaum C, Zody MC, Borowsky ML, Kamal M, Kodira CD, et al. DNA sequence and analysis of human chromosome 18 NATURE. 2005 SEP 22; 437 (7058): 551-555	5	17	19	34
1199	4670 Ray DA, Batzer MA Tracking Alu evolution in New World primates BMC EVOLUTIONARY BIOLOGY. 2005 OCT 6; 5: Art. No. 51	5	8	17	82
1200	4744 Brent MR Genome annotation past, present, and future: How to define an ORF at each locus GENOME RESEARCH. 2005 DEC; 15 (12): 1777-1786	5	42	25	70

Date / Author / Journal

1101

Science, medicine, and the future - Bioinformatics

BRITISH MEDICAL JOURNAL. 2002 APR 27; 324 (7344): 1018-1022

1102

1233 Mardis E, McPherson J, Martienssen R, Wilson RK, McCombie WR

What is finished, and why does it matter

GENOME RESEARCH. 2002 MAY; 12 (5): 669-671

1103

1236 Xie HQ, Wasserman A, Levine Z, Novik A, Grebinskiy V, et al.

Large-scale protein annotation through gene ontology

GENOME RESEARCH. 2002 MAY; 12 (5): 785-794

1104

1263 Agrafiotis DK, Lobanov VS, Salemme FR

Combinatorial informatics in the post-genomics era

NATURE REVIEWS DRUG DISCOVERY. 2002 MAY; 1 (5): 337-346

115

1105

1408 Cavaille J, Seitz H, Paulsen M, Ferguson-Smith AC, Bachellerie JP

Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region

HUMAN MOLECULAR GENETICS. 2002 JUN 15; 11 (13): 1527-1538

1106

1461 Payseur BA, Cutter AD, Nachman MW

Searching for evidence of positive selection in the human genome using patterns of microsatellite variability

MOLECULAR BIOLOGY AND EVOLUTION. 2002 JUL; 19 (7): 1143-1153

1107

1559 Kirk BW, Feinsod M, Favis R, Kliman RM, Barany F

Single nucleotide polymorphism seeking long term association with complex disease

NUCLEIC ACIDS RESEARCH. 2002 AUG 1; 30 (15): 3295-3311

107

162

1108

1616 Levy S, Hannenhalli S

Identification of transcription factor binding sites in the human genome sequence

MAMMALIAN GENOME. 2002 SEP; 13 (9): 510-514

1109

1651 Wang PJ, Page DC

Functional substitution for TAF(II)250 by a retroposed homolog that is expressed in human spermatogenesis

HUMAN MOLECULAR GENETICS. 2002 SEP 15; 11 (19): 2341-2346

1110

1802 Nachman MW

Variation in recombination rate across the genome: evidence and implications

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2002 DEC; 12 (6): 657-663

Date / Author / Journal

LCS

GCS

LCR

1111

1804 Lynch M, Richardson AO

The evolution of spliceosomal introns

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2002 DEC; 12 (6): 701-710

115

1112

1849 Chin KV, Kong ANT

Application of DNA Microarrays in pharmacogenomics and toxicogenomics

PHARMACEUTICAL RESEARCH. 2002 DEC; 19 (12): 1773-1778

1113

1914 Hariri AR, Weinberger DR

Imaging genomics

BRITISH MEDICAL BULLETIN. 2003; 65: 259-270

125

1114

1950 Hayes H, Elduque C, Gautier M, Schibler L, Cribiu E, et al.

Mapping of 195 genes in cattle and updated comparative map with man, mouse, rat and pig

CYTOGENETIC AND GENOME RESEARCH. 2003; 102 (1-4): 16-24

1115

1962 Xuan ZY, Wang JH, Zhang MQ

Computational comparison of two mouse draft genomes and the human golden path

GENOME BIOLOGY. 2003; 4 (1): Art. No. R1

1116

1967 Szak ST, Pickeral OK, Landsman D, Boeke JD

GENOME BIOLOGY. 2003; 4 (5): Art. No. R30

1117

1992 Durand D, Sankoff D

Tests for gene clustering

JOURNAL OF COMPUTATIONAL BIOLOGY. 2003; 10 (3-4): 453-482

1118

2058 van Driel MA, Cuelenaere K, Kemmeren PPCW, Leunissen JAM, Brunner HG

A new web-based data mining tool for the identification of candidate genes for human genetic disorders

EUROPEAN JOURNAL OF HUMAN GENETICS. 2003 JAN; 11 (1): 57-63

1119

2162 Cantile M, Procino A, D'Armiento M, Cindolo L, Cillo C

HOX gene network is involved in the transcriptional regulation of in vivo human adipogenesis

JOURNAL OF CELLULAR PHYSIOLOGY. 2003 FEB; 194 (2): 225-236

1120

2171 McCarty AS, Kleiger G, Eisenberg D, Smale ST

Selective dimerization of a C2H2 zinc finger subfamily

MOLECULAR CELL. 2003 FEB; 11 (2): 459-470

Date / Author / Journal

LCS

GCS

LCR

1121

2198 Chanda SK, Caldwell JS

Fulfilling the promise: drug discovery in the post-genomic era

DRUG DISCOVERY TODAY. 2003 FEB 15; 8 (4): 168-174

1122

2210 Langkjaer RB, Cliften PF, Johnston M, Piskur J

Yeast genome duplication was followed by asynchronous differentiation of duplicated genes

NATURE. 2003 FEB 20; 421 (6925): 848-852

1123

2231 Navarro A, Barton NH

Accumulating postzygotic isolation genes in parapatry: A new twist on chromosomal speciation

EVOLUTION. 2003 MAR; 57 (3): 447-459

117

1124

2237 Chapman MA, Charchar FJ, Kinston S, Bird CP, Grafham D, et al.

Comparative and functional analyses of LYL1 loci establish marsupial sequences as a model for phylogenetic footprinting

GENOMICS. 2003 MAR; 81 (3): 249-259

1125

2257 Kanehisa M, Bork P

Bioinformatics in the post-sequence era

NATURE GENETICS. 2003 MAR; 33: 305-310

1126

2309 Liu RX, McEachin RC, States DJ

Computationally identifying novel NF-kappa B-regulated immune genes in the human genome

GENOME RESEARCH. 2003 APR; 13 (4): 654-661

1127

2551 Nahon JL

Birth of 'human-specific' genes during primate evolution

GENETICA. 2003 JUL; 118 (2-3): 193-208

117

1128

2568 Pennacchio LA

Insights from human/mouse genome comparisons

MAMMALIAN GENOME. 2003 JUL; 14 (7): 429-436

1129

2572 Nakai H, Montini E, Fuess S, Storm TA, Grompe M, et al.

AAV serotype 2 vectors preferentially integrate into active genes in mice

NATURE GENETICS. 2003 JUL; 34 (3): 297-302

151

1130

2589 Halees AS, Leyfer D, Weng ZP

PromoSer: a large-scale mammalian promoter and transcription start site identification service

NUCLEIC ACIDS RESEARCH. 2003 JUL 1; 31 (13): 3554-3559

Date / Author / Journal

LCS

GCS

LCR

1131

2597 Bergthorsson U, Adams KL, Thomason B, Palmer JD

Widespread horizontal transfer of mitochondrial genes in flowering plants

NATURE. 2003 JUL 10; 424 (6945): 197-201

129

1132

2606 Zhang ZL, Gerstein M

The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse

GENE. 2003 JUL 17; 312: 61-72

1133

2640 Bajic VB, Seah SH

Dragon Gene Start Finder: An advanced system for finding approximate locations of the start of gene transcriptional units

GENOME RESEARCH. 2003 AUG; 13 (8): 1923-1929

1134

2656 Vienne A, Rasmussen J, Abi-Rached L, Pontarotti P, Gilles A

Systematic phylogenomic evidence of en bloc duplication of the ancestral 8p11.21-8p21.3-like region

MOLECULAR BIOLOGY AND EVOLUTION. 2003 AUG; 20 (8): 1290-1298

1135

2689 Kurland CG, Canback B, Berg OG

Horizontal gene transfer: A critical view

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 AUG 19; 100 (17): 9658-9662

139

1136

2713 Engler FW, Hatfield J, Nelson W, Soderlund CA

Locating sequence on FPC maps and selecting a minimal tiling path

GENOME RESEARCH. 2003 SEP; 13 (9): 2152-2163

1137

2766 Mei R, Hubbell E, Bekiranov S, Mittmann M, Christians FC, et al.

Probe selection for high-density oligonucleotide arrays

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 SEP 30; 100 (20): 11237-11242

1138

2827 Astolfi P, Bellizzi D, Sgaramella V

Frequency and coverage of trinucleotide repeats in eukaryotes

GENE. 2003 OCT 23; 317 (1-2): 117-125

1139

2828 Zhang CT, Zhang R

An isochore map of the human genome based on the Z curve method

GENE. 2003 OCT 23; 317 (1-2): 127-135

1140

2853 Nakamura A, Okazaki Y, Sugimoto J, Oda T, Jinno Y

Human endogenous retroviruses with transcriptional potential in the brain

JOURNAL OF HUMAN GENETICS. 2003 NOV; 48 (11): 575-581

Date / Author / Journal

LCS

GCS

LCR

1141

2858 Maojo V, Kulikowski CA

Bioinformatics and medical informatics: Collaborations on the road to genomic medicine?

JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION. 2003 NOV-DEC; 10 (6): 515-522

1142

2879 Wen SY, Zhang CT

Identification of isochore boundaries in the human genome using the technique of wavelet multiresolution analysis

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2003 NOV 7; 311 (1): 215-222

1143

2914 Copley RR, Goodstadt L, Ponting C

Eukaryotic domain evolution inferred from genome comparisons

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2003 DEC; 13 (6): 623-628

1144

2946 Kinsella RJ, McInerney JO

Eukaryotic genes in Mycobacterium tuberculosis? Possible alternative explanations

TRENDS IN GENETICS. 2003 DEC; 19 (12): 687-689

1145

2996 Enard W, Paabo S

Comparative primate genomics

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2004; 5: 351-378

153

1146

3045 Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, et al.

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

GENOME BIOLOGY. 2004; 5 (2): Art. No. R7

117

133

1147

3054 Lee C, Roy M

Analysis of alternative splicing with microarrays: successes and challenges

GENOME BIOLOGY. 2004; 5 (7): Art. No. 231

1148

3058 Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, et al.

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

GENOME BIOLOGY. 2004; 5 (9): Art. No. R61

1149

3157 Matsumoto T, Takahashi H, Fujiwara H

Targeted nuclear import of open reading frame 1 protein is required for in vivo retrotransposition of a telomere-specific non-long terminal repeat retrotransposon, SART1

MOLECULAR AND CELLULAR BIOLOGY. 2004 JAN; 24 (1): 105-122

1150

3169 Farley AH, Prak ETL, Kazazian HH

More active human L1 retrotransposons produce longer insertions

NUCLEIC ACIDS RESEARCH. 2004 JAN; 32 (2): 502-510

Date / Author / Journal

LCS

GCS

LCR

1151

3171 Meyer IM, Durbin R

Gene structure conservation aids similarity based gene prediction

NUCLEIC ACIDS RESEARCH. 2004 JAN; 32 (2): 776-783

1152

3179 Ruan YJ, Le Ber P, Ng HH, Liu ET

Interrogating the transcriptome

TRENDS IN BIOTECHNOLOGY. 2004 JAN; 22 (1): 23-30

1153

3195 Bannasch D, Mehrle A, Glatting KH, Pepperkok R, Poustka A, et al.

LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system

NUCLEIC ACIDS RESEARCH. 2004 JAN 1; 32: D505-D508

1154

3243 Barry EG, Witherspoon DJ, Lampe DJ

A bacterial genetic screen identifies functional coding sequences of the insect mariner transposable element Famar1 amplified from the genome of the earwig, Forficula auricularia

GENETICS. 2004 FEB; 166 (2): 823-833

1155

3259 Gaudet F, Rideout WM, Meissner A, Dausman J, Leonhardt H, et al.

Dnmt1 expression in pre-and postimplantation embryogenesis and the maintenance of IAP silencing

MOLECULAR AND CELLULAR BIOLOGY. 2004 FEB; 24 (4): 1640-1648

1156

3266 Marino-Ramirez L, Spouge JL, Kanga GC, Landsman D

Statistical analysis of over-represented words in human promoter sequences

NUCLEIC ACIDS RESEARCH. 2004 FEB; 32 (3): 949-958

1157

3292 Malnic B, Godfrey PA, Buck LB

The human olfactory receptor gene family

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 FEB 24; 101 (8): 2584-2589

100

1158

3370 Taylor MS, Ponting CP, Copley RR

Occurrence and consequences of coding sequence insertions and deletions in mammalian genomes

GENOME RESEARCH. 2004 APR; 14 (4): 555-566

1159

3372 Chen R, Sodergren E, Weinstock GM, Gibbs RA

Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project

GENOME RESEARCH. 2004 APR; 14 (4): 679-684

1160

3377 Osoegawa K, Zhu BL, Shu CL, Ren T, Cao Q, et al.

BAC resources for the rat genome project

GENOME RESEARCH. 2004 APR; 14 (4): 780-785

Date / Author / Journal

LCS

GCS

LCR

1161

3393 Beaumont MA, Rannala B

The Bayesian revolution in genetics

NATURE REVIEWS GENETICS. 2004 APR; 5 (4): 251-261

121

110

1162

3432 Cotrim NH, Auricchio MTBM, Vicente JP, Otto PA, Mingroni-Netto RC

Polymorphic Alu insertions in six Brazilian African-derived populations

AMERICAN JOURNAL OF HUMAN BIOLOGY. 2004 MAY-JUN; 16 (3): 264-277

1163

3447 Searle SMJ, Gilbert J, Iyer V, Clamp M

The Otter annotation system

GENOME RESEARCH. 2004 MAY; 14 (5): 963-970

1164

3565 Morey C, Avner P

Employment opportunities for non-coding RNAs

FEBS LETTERS. 2004 JUN 1; 567 (1): 27-34

1165

3566 Jasinska A, Krzyzosiak WJ

Repetitive sequences that shape the human transcriptome

FEBS LETTERS. 2004 JUN 1; 567 (1): 136-141

1166

3613 Franchini LF, Ganko EW, McDonald JF

Retrotransposon-gene associations are widespread among D-melanogaster populations

MOLECULAR BIOLOGY AND EVOLUTION. 2004 JUL; 21 (7): 1323-1331

1167

3614 Kudla G, Helwak A, Lipinski L

Gene conversion and GC-content evolution in mammalian Hsp70

MOLECULAR BIOLOGY AND EVOLUTION. 2004 JUL; 21 (7): 1438-1444

1168

3641 Thomas EE, Srebro N, Sebat J, Navin N, Healy J, et al.

Distribution of short paired duplications in mammalian genomes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 JUL 13; 101 (28): 10349-10354

1169

3652 Suzuki M, Hayashizaki Y

Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs

BIOESSAYS. 2004 AUG; 26 (8): 833-843

115

1170

3727 Hattori N, Abe T, Hattori N, Suzuki M, Matsuyama T, et al.

Preference of DNA methyltransferases for CpG islands in mouse embryonic stem cells

GENOME RESEARCH. 2004 SEP; 14 (9): 1733-1740

Date / Author / Journal

LCS

GCS

LCR

1171

3735 Wang QQ, Carmichael GG

Effects of length and location on the cellular response to double-stranded RNA

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS. 2004 SEP; 68 (3): 432-+

434

1172

3782 Warburton PE, Giordano J, Cheung F, Gelfand Y, Benson G

Inverted repeat structure of the human genome: The X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes

GENOME RESEARCH. 2004 OCT; 14 (10A): 1861-1869

1173

3803 Webster MT, Smith NGC, Lercher MJ, Ellegren H

Gene expression, synteny, and local similarity in human noncoding mutation rates

MOLECULAR BIOLOGY AND EVOLUTION. 2004 OCT; 21 (10): 1820-1830

1174

3870 Bajic VB, Tan SL, Suzuki Y, Sugano S

Promoter prediction analysis on the whole human genome

NATURE BIOTECHNOLOGY. 2004 NOV; 22 (11): 1467-1473

1175

3945 Wong LH, Choo KHA

Evolutionary dynamics of transposable elements at the centromere

TRENDS IN GENETICS. 2004 DEC; 20 (12): 611-616

1176

4031 Zingler N, Weichenrieder O, Schumann GG

APE-type non-LTR retrotransposons: determinants involved in target site recognition

CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 250-268

194

1177

4033 Brandt J, Veith AM, Volff JN

A family of neofunctionalized Ty3/gypsy retrotransposon genes in mammalian genomes

CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 307-317

1178

4038 Boissinot S, Furano AV

The recent evolution of human L1 retrotransposons

CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 402-406

1179

4153 Gupta S, Gallavotti A, Stryker GA, Schmidt RJ, Lal SK

A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes

PLANT MOLECULAR BIOLOGY. 2005 JAN; 57 (1): 115-127

1180

4315 Kalnina Z, Zayakin P, Silina K, Line A

Alterations of pre-mRNA splicing in cancer

GENES CHROMOSOMES & CANCER. 2005 APR; 42 (4): 342-357

106

Date / Author / Journal

LCS

GCS

LCR

1181

4319 Itoh T, Watanabe T, Ihara N, Mariani P, Beattie CW, et al.

A comprehensive radiation hybrid map of the bovine genome comprising 5593 loci

GENOMICS. 2005 APR; 85 (4): 413-424

1182

4321 McClure MA, Richardson HS, Clinton RA, Hepp CM, Crowther BA, et al.

Automated characterization of potentially active retroid agents in the human genome

GENOMICS. 2005 APR; 85 (4): 512-523

1183

4329 Hammer SE, Strehl S, Hagemann S

Homologs of Drosophila P transposons were mobile in zebrafish but have been domesticated in a common ancestor of chicken and human

MOLECULAR BIOLOGY AND EVOLUTION. 2005 APR; 22 (4): 833-844

1184

4337 Li WT, Holste D

Universal 1/f noise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome

PHYSICAL REVIEW E. 2005 APR; 71 (4): Art. No. 041910

1185

4346 Dunn CA, Mager DL

Transcription of the human and rodent SPAM1/PH-20 genes initiates within an ancient endogenous retrovirus

BMC GENOMICS. 2005 APR 1; 6: Art. No. 47

1186

4351 Sinzelle L, Pollet N, Bigot Y, Mazabraud A

Characterization of multiple lineages of Tc1-like elements within the genome of the amphibian Xenopus tropicalis

GENE. 2005 APR 11; 349: 187-196

1187

4354 Gloriam DEI, Schioth HB, Fredriksson R

Nine new human Rhodopsin family G-protein coupled receptors: Identification, sequence characterisation and evolutionary relationship

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS. 2005 APR 15; 1722 (3): 235-246

1188

4406 Eyras E, Reymond A, Castelo R, Bye JM, Camara F, et al.

Gene finding in the chicken genome

BMC BIOINFORMATICS. 2005 MAY 30; 6: Art. No. 131

1189

4454 Shen R, Fan JB, Campbell D, Chang WH, Chen J, et al.

High-throughput SNP genotyping on universal bead arrays

MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. 2005 JUN 3; 573 (1-2): 70-82

1190

4482 Grover D, Kannan K, Brahmachari SK, Mukerji M

ALU-ring elements in the primate genomes

GENETICA. 2005 JUL; 124 (2): 273-289

111

Date / Author / Journal

LCS

GCS

LCR

1191

4518 Schueler MG, Dunn JM, Bird CP, Ross MT, Viggiano L, et al.

Progressive proximal expansion of the primate X chromosome centromere

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JUL 26; 102 (30): 10563-10568

1192

4549 Sandovici I, Kassovska-Bratinova S, Loredo-Osti JC, Leppert M, Suarez A, et al.

Interindividual variability and parent of origin DNA methylation differences at specific human Alu elements

HUMAN MOLECULAR GENETICS. 2005 AUG 1; 14 (15): 2135-2143

1193

4556 Jern P, Sperber GO, Blomberg J

Use of Endogenous Retroviral Sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy

RETROVIROLOGY. 2005 AUG 10; 2: Art. No. 50

1194

4571 Antonell A, de Luis O, Domingo-Roura X, Perez-Jurado LA

Evolutionary mechanisms shaping the genomic structure of the Williams-Beuren syndrome chromosomal region at human 7q11.23

GENOME RESEARCH. 2005 SEP; 15 (9): 1179-1188

1195

4577 Moyes DL, Martin A, Sawcer S, Temperton N, Worthington J, et al.

The distribution of the endogenous retroviruses HERV-K113 and HERV-K115 in health and disease

GENOMICS. 2005 SEP; 86 (3): 337-341

1196

4605 Claverie JM

Fewer genes, more noncoding RNA

SCIENCE. 2005 SEP 2; 309 (5740): 1529-1530

1197

4613 Rogers YH, Venter JC

Genomics - Massively parallel sequencing

NATURE. 2005 SEP 15; 437 (7057): 326-327

1198

4616 Nusbaum C, Zody MC, Borowsky ML, Kamal M, Kodira CD, et al.

DNA sequence and analysis of human chromosome 18

NATURE. 2005 SEP 22; 437 (7058): 551-555

1199

4670 Ray DA, Batzer MA

Tracking Alu evolution in New World primates

BMC EVOLUTIONARY BIOLOGY. 2005 OCT 6; 5: Art. No. 51

1200

4744 Brent MR

Genome annotation past, present, and future: How to define an ORF at each locus

GENOME RESEARCH. 2005 DEC; 15 (12): 1777-1786

Initial sequencing and analysis of the human genome (Lander) The papers citing Lander ES, et al. "Initial sequencing and analysis of the human genome." NATURE. 2001 FEB 15; 409 (6822): 860-921	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 38623, GCS 253809, CR 422506 Collection span: 2000 - 2010
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