HistCite - Initial sequencing and analysis of the human genome (Lander)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
1001	3423 Hui LJ, Zhang X, Wu X, Lin ZX, Wang QK, et al. Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment ONCOGENE. 2004 APR 15; 23 (17): 3013-3023	6	41	8	39
1002	3552 Lopez-Bigas N, Ouzounis CA Genome-wide identification of genes likely to be involved in human genetic disease NUCLEIC ACIDS RESEARCH. 2004 JUN; 32 (10): 3108-3114	6	76	7	30
1003	3621 Krzywinski M, Bosdet I, Smailus D, Chiu R, Mathewson C, et al. A set of BAC clones spanning the human genome NUCLEIC ACIDS RESEARCH. 2004 JUL; 32 (12): 3651-3660	6	78	7	24
1004	3738 Feschotte C Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences MOLECULAR BIOLOGY AND EVOLUTION. 2004 SEP; 21 (9): 1769-1780	6	26	7	48
1005	3778 Furey TS, Diekhans M, Lu YT, Graves TA, Oddy L, et al. Analysis of human mRNAs with the reference genome sequence reveals potent errors, polymorphisms, and RNA editing GENOME RESEARCH. 2004 OCT; 14 (10B): 2034-2040	6	18	9	27
1006	3779 Messina DN, Glasscock J, Gish W, Lovett M An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression GENOME RESEARCH. 2004 OCT; 14 (10B): 2041-2047	6	50	7	42
1007	3801 Armbruester V, Sauter M, Roemer K, Best B, Hahn S, et al. Np9 protein of human endogenous retrovirus K interacts with ligand of numb protein X JOURNAL OF VIROLOGY. 2004 OCT; 78 (19): 10310-10319	6	16	4	39
1008	3824 Stein LD Human genome - End of the beginning NATURE. 2004 OCT 21; 431 (7011): 915-916	6	40	4	4
1009	3935 Neafsey DE, Blumenstiel JP, Hartl DL Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies MOLECULAR BIOLOGY AND EVOLUTION. 2004 DEC; 21 (12): 2310-2318	6	12	10	68
1010	3962 Goff SP Retrovirus restriction factors MOLECULAR CELL. 2004 DEC 22; 16 (6): 849-859	6	107	1	113
#	Date / Author / Journal	LCS	GCS	LCR	CR
1011	4023 Biemont C, Vieira C What transposable elements tell us about genome organization and evolution: the case of Drosophila CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 25-34	6	20	24	176
1012	4026 Jurka J, Kohany O, Pavlicek A, Kapitonov VV, Jurka MV Clustering, duplication and chromosomal distribution of mouse SINE retrotransposons CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 117-123	6	14	13	49
1013	4039 Grahn RA, Rinehart TA, Cantrell MA, Wichman HA Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 407-415	6	10	4	58
1014	4083 Vinogradov AE Noncoding DNA, isochores and gene expression: nucleosome formation potential NUCLEIC ACIDS RESEARCH. 2005; 33 (2): 559-563	6	35	16	62
1015	4202 Ho HJ, Ray DA, Salem AH, Myers JS, Batzer MA Straightening out the LINEs: LINE-1 orthologous loci GENOMICS. 2005 FEB; 85 (2): 201-207	6	7	13	36
1016	4220 Allegrucci C, Thurston A, Lucas E, Young L Epigenetics and the germline REPRODUCTION. 2005 FEB; 129 (2): 137-149	6	63	4	148
1017	4225 Chiesl TN, Shi W, Barron AE Poly(acrylamide-co-alkylacrylamides) for electrophoretic DNA purification in microchannels ANALYTICAL CHEMISTRY. 2005 FEB 1; 77 (3): 772-779	6	24	5	44
1018	4248 Miskey C, Izsvak Z, Kawakami K, Ivics Z DNA transposons in vertebrate functional genomics CELLULAR AND MOLECULAR LIFE SCIENCES. 2005 MAR; 62 (6): 629-641	6	30	8	91
1019	4260 Dahary D, Elroy-Stein O, Sorek R Naturally occurring antisense: Transcriptional leakage or real overlap? GENOME RESEARCH. 2005 MAR; 15 (3): 364-368	6	52	7	25
1020	4330 Churakov G, Smit AFA, Brosius J, Schmitz B A novel abundant family of retroposed elements (DAS-SINEs) in the nine-banded armadillo (Dasypus novemcinctus) MOLECULAR BIOLOGY AND EVOLUTION. 2005 APR; 22 (4): 886-893	6	18	8	42
#	Date / Author / Journal	LCS	GCS	LCR	CR
1021	4345 Dror G, Sorek R, Shamir R Accurate identification of alternatively spliced exons using support vector machine BIOINFORMATICS. 2005 APR 1; 21 (7): 897-901	6	39	12	36
1022	4412 Price AL, Jones NC, Pevzner PA De novo identification of repeat families in large genomes BIOINFORMATICS. 2005 JUN; 21: I351-I358	6	18	6	26
1023	4510 Touchon M, Nicolay S, Audit B, Brodie Brodie EB, d'Aubenton-Carafa Y, et al. Replication-associated strand asymmetries in mammalian genomes: Toward detection of replication origins PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JUL 12; 102 (28): 9836-9841	6	31	7	40
1024	4574 Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, et al. The zebrafish gene map defines ancestral vertebrate chromosomes GENOME RESEARCH. 2005 SEP; 15 (9): 1307-1314	6	141	6	36
1025	4695 Mayer J, Stuhr T, Reus K, Maldener E, Kitova M, et al. Haplotype analysis of the human endogenous retrovirus locus HERV-K(HML-2.HOM) and its evolutionary implications JOURNAL OF MOLECULAR EVOLUTION. 2005 NOV; 61 (5): 706-715	6	10	6	22
1026	4758 Clay O, Bernardi G How not to search for isochores: A reply to Cohen et al. MOLECULAR BIOLOGY AND EVOLUTION. 2005 DEC; 22 (12): 2315-2317	6	8	10	22
1027	4764 Haberer G, Young S, Bharti AK, Gundlach H, Raymond C, et al. Structure and architecture of the maize genome PLANT PHYSIOLOGY. 2005 DEC; 139 (4): 1612-1624	6	52	7	62
1028	4779 Dunn CA, de Lagemaat LNV, Baillie GJ, Mager DL Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: The case of primate beta 3GAL-T5 GENE. 2005 DEC 30; 364: 2-12	6	12	9	30
1029	4881 Hasler J, Strub K Alu RNP and Alu RNA regulate translation initiation in vitro NUCLEIC ACIDS RESEARCH. 2006; 34 (8): 2374-2385	6	19	5	62
1030	4959 Nusbaum C, Mikkelsen TS, Zody MC, Asakawa S, Taudien S, et al. DNA sequence and analysis of human chromosome 8 NATURE. 2006 JAN 19; 439 (7074): 331-335	6	31	13	32
#	Date / Author / Journal	LCS	GCS	LCR	CR
1031	5006 Surgand JS, Rodrigo J, Kellenberger E, Rognan D A chemogenomic analysis of the transmembrane binding cavity of human G-protein-coupled receptors PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 2006 FEB 1; 62 (2): 509-538	6	49	9	198
1032	5131 Kawahara Y, Nishikura K Extensive adenosine-to-inosine editing detected in Alu repeats of antisense RNAs reveals scarcity of sense-antisense duplex formation FEBS LETTERS. 2006 APR 17; 580 (9): 2301-2305	6	13	6	24
1033	5139 Muzny DM, Scherer SE, Kaul R, Wang J, Yu J, et al. The DNA sequence, annotation and analysis of human chromosome 3 NATURE. 2006 APR 27; 440 (7088): 1194-1198	6	12	13	27
1034	5213 Zavolan M, van Nimwegen E The types and prevalence of alternative splice forms CURRENT OPINION IN STRUCTURAL BIOLOGY. 2006 JUN; 16 (3): 362-367	6	17	18	49
1035	5228 Khelifi A, Meunier J, Duret L, Mouchiroud D GC content evolution of the human and mouse genomes: Insights from the study of processed pseudogenes in regions of different recombination rates JOURNAL OF MOLECULAR EVOLUTION. 2006 JUN; 62 (6): 745-752	6	14	17	70
1036	5304 Chen JC, Rattner A, Nathans J Effects of L1 retrotransposon insertion on transcript processing, localization and accumulation: lessons from the retinal degeneration 7 mouse and implications for the genomic ecology of L1 elements HUMAN MOLECULAR GENETICS. 2006 JUL 1; 15 (13): 2146-2156	6	15	8	42
1037	5385 Carninci P Tagging mammalian transcription complexity TRENDS IN GENETICS. 2006 SEP; 22 (9): 501-510	6	35	24	75
1038	5429 Neeman Y, Levanon EY, Jantsch MF, Eisenberg E RNA editing level in the mouse is determined by the genomic repeat repertoire RNA-A PUBLICATION OF THE RNA SOCIETY. 2006 OCT; 12 (10): 1802-1809	6	14	6	30
1039	5437 Wu SCY, Meir YJJ, Coates CJ, Handler AM, Pelczar P, et al. piggyBac is a flexible and highly active transposon as compared to Sleeping Beauty, Tol2 and Mos1 in mammalian cells PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 OCT 10; 103 (41): 15008-15013	6	42	4	33
1040	5498 Fiegler H, Redon R, Andrews D, Scott C, Andrews R, et al. Accurate and reliable high-throughput detection of copy number variation in the human genome GENOME RESEARCH. 2006 DEC; 16 (12): 1566-1574	6	50	3	21
#	Date / Author / Journal	LCS	GCS	LCR	CR
1041	5542 Duret L, Eyre-Walker A, Galtier N A new perspective on isochore evolution GENE. 2006 DEC 30; 385: 71-74	6	31	20	35
1042	5662 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al. New developments in the InterPro database NUCLEIC ACIDS RESEARCH. 2007 JAN; 35: D224-D228	6	200	1	22
1043	5703 Cho NY, Kim BH, Yoo EJ, Moon KC, Cho YM, et al. Hypermethylation of CpG island loci and hypomethylation of LINE-I and Alu repeats in prostate adenocarcinoma and their relationship to clinicopathological features JOURNAL OF PATHOLOGY. 2007 FEB; 211 (3): 269-277	6	31	5	35
1044	5727 Bernstein BE, Meissner A, Lander ES The mammalian epigenome CELL. 2007 FEB 23; 128 (4): 669-681	6	260	14	97
1045	5750 Ray DA, Pagan HJT, Thompson ML, Stevens RD Bats with hATs: Evidence for recent DNA transposon activity in genus Myotis MOLECULAR BIOLOGY AND EVOLUTION. 2007 MAR; 24 (3): 632-639	6	9	11	33
1046	5806 Pritham EJ, Putliwala T, Feschotte C Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses GENE. 2007 APR 1; 390 (1-2): 3-17	6	19	9	78
1047	5863 Mattick JS A new paradigm for developmental biology JOURNAL OF EXPERIMENTAL BIOLOGY. 2007 MAY 1; 210 (9): 1526-1547	6	58	48	367
1048	5995 Sperber GO, Airola T, Jern P, Blomberg J Automated recognition of retroviral sequences in genomic data - RetroTector (c) NUCLEIC ACIDS RESEARCH. 2007 AUG; 35 (15): 4964-4976	6	12	13	51
1049	6085 Estivill X, Armengol L Copy number variants and common disorders: Filling the gaps and exploring complexity in genome-wide association studies PLOS GENETICS. 2007 OCT; 3 (10): 1787-1799	6	50	7	82
1050	6086 Han K, Lee J, Meyer TJ, Wang J, Sen SK, et al. Alu recombination-mediated structural deletions in the chimpanzee genome PLOS GENETICS. 2007 OCT; 3 (10): 1939-1949	6	15	17	56
#	Date / Author / Journal	LCS	GCS	LCR	CR
1051	6106 Muotri AR, Marchetto MCN, Coufal NG, Gage FH The necessary junk: new functions for transposable elements HUMAN MOLECULAR GENETICS. 2007 OCT 15; 16: R159-R167	6	18	43	77
1052	6193 Jern P, Coffin JM Effects of Retroviruses on Host Genome Function ANNUAL REVIEW OF GENETICS. 2008; 42: 709-732	6	12	26	131
1053	6347 Conley AB, Miller WJ, Jordan IK Human cis natural antisense transcripts initiated by transposable elements TRENDS IN GENETICS. 2008 FEB; 24 (2): 53-56	6	14	12	25
1054	6407 Belancio VP, Roy-Engel AM, Deininger P The impact of multiple splice sites in human L1 elements GENE. 2008 MAR 31; 411 (1-2): 38-45	6	6	19	49
1055	6545 Putnam NH, Butts T, Ferrier DEK, Furlong RF, Hellsten U, et al. The amphioxus genome and the evolution of the chordate karyotype NATURE. 2008 JUN 19; 453 (7198): 1064-U3	6	142	16	80
1056	26 Caballero OL, de Souza SJ, Brentani RR, Simpson AJG Alternative spliced transcripts as cancer markers DISEASE MARKERS. 2001; 17 (2): 67-75	5	37	1	37
1057	148 Lupas AN, Ponting CP, Russell RB On the evolution of protein folds: Are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? JOURNAL OF STRUCTURAL BIOLOGY. 2001 MAY-JUN; 134 (2-3): 191-203	5	85	1	63
1058	166 Hooper LV, Gordon JI Commensal host-bacterial relationships in the gut SCIENCE. 2001 MAY 11; 292 (5519): 1115-1118	5	436	2	51
1059	178 Sreekumar KR, Aravind L, Koonin EV Computational analysis of human disease-associated genes and their protein products CURRENT OPINION IN GENETICS & DEVELOPMENT. 2001 JUN; 11 (3): 247-257	5	10	2	100
1060	182 Voss SR, Smith JJ, Gardiner DM, Parichy DM Conserved vertebrate chromosome segments in the large salamander genome GENETICS. 2001 JUN; 158 (2): 735-746	5	34	1	34
#	Date / Author / Journal	LCS	GCS	LCR	CR
1061	200 Downward J The ins and outs of signalling NATURE. 2001 JUN 14; 411 (6839): 759-762	5	87	2	25
1062	211 Rannala B, Reeve JP High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence AMERICAN JOURNAL OF HUMAN GENETICS. 2001 JUL; 69 (1): 159-178	5	57	2	36
1063	221 Cuadrado M, Sacristan M, Antequera F Species-specific organization of CpG island promoters at mammalian homologous genes EMBO REPORTS. 2001 JUL; 2 (7): 586-592	5	23	2	34
1064	235 Hesse M, Magin TM, Weber K Genes for intermediate filament proteins and the draft sequence of the human genome: novel keratin genes and a surprisingly high number of pseudogenes related to keratin genes 8 and 18 JOURNAL OF CELL SCIENCE. 2001 JUL; 114 (14): 2569-2575	5	153	1	43
1065	246 Kinoshita K, Honjo T Linking class-switch recombination with somatic hypermutation NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2001 JUL; 2 (7): 493-503	5	72	2	105
1066	250 Lesley SA High-throughput proteomics: Protein expression and purification in the postgenomic world PROTEIN EXPRESSION AND PURIFICATION. 2001 JUL; 22 (2): 159-164	5	77	1	12
1067	254 Maggio ET, Ramnarayan K Recent developments in computational proteomics TRENDS IN BIOTECHNOLOGY. 2001 JUL; 19 (7): 266-272	5	29	2	30
1068	270 Feschotte C, Wessler SR Treasures in the attic: Rolling circle transposons discovered in eukaryotic genomes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 JUL 31; 98 (16): 8923-8924	5	30	1	22
1069	287 Yu YT, Zhang CG, Zhou GQ, Wu SF, Qu XH, et al. Gene expression profiling in human fetal liver and identification of tissue-and developmental-stage-specific genes through compiled expression profiles and efficient cloning of full-length cDNAs GENOME RESEARCH. 2001 AUG; 11 (8): 1392-1403	5	32	2	32
1070	300 Llorens C, Marin I A mammalian gene evolved from the integrase domain of an LTR retrotransposon MOLECULAR BIOLOGY AND EVOLUTION. 2001 AUG; 18 (8): 1597-1600	5	13	1	14
#	Date / Author / Journal	LCS	GCS	LCR	CR
1071	330 Chicurel M Faster, better, cheaper genotyping NATURE. 2001 AUG 9; 412 (6847): 580-582	5	41	2	17
1072	380 Kondo S, Shinagawa A, Saito T, Kiyosawa H, Yamanaka I, et al. Computational analysis of full-length mouse cDNAs compared with human genome sequences MAMMALIAN GENOME. 2001 SEP; 12 (9): 673-677	5	9	2	10
1073	437 Cremer M, von Hase J, Volm T, Brero A, Kreth G, et al. Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells CHROMOSOME RESEARCH. 2001 OCT; 9 (7): 541-567	5	150	2	73
1074	486 Robinson-Rechavi M, Carpentier AS, Duffraisse M, Laudet V How many nuclear hormone receptors are there in the human genome? TRENDS IN GENETICS. 2001 OCT; 17 (10): 554-556	5	84	2	19
1075	487 Mira A, Ochman H, Moran NA Deletional bias and the evolution of bacterial genomes TRENDS IN GENETICS. 2001 OCT; 17 (10): 589-596	5	193	2	54
1076	490 Knaust RKC, Nordlund P Screening for soluble expression of recombinant proteins in a 96-well format ANALYTICAL BIOCHEMISTRY. 2001 OCT 1; 297 (1): 79-85	5	52	2	14
1077	502 Miller MP, Kumar S Understanding human disease mutations through the use of interspecific genetic variation HUMAN MOLECULAR GENETICS. 2001 OCT 2; 10 (21): 2319-2328	5	115	2	39
1078	541 Cravchik A, Subramanian G, Broder S, Venter JC Sequence analysis of the human genome - Implications for the understanding of nervous system function and disease ARCHIVES OF NEUROLOGY. 2001 NOV; 58 (11): 1772-1778	5	14	3	20
1079	569 Eichler EE, Johnson ME, Alkan C, Tuzun E, Sahinalp C, et al. Divergent origins and concerted expansion of two segmental duplications on chromosome 16 JOURNAL OF HEREDITY. 2001 NOV-DEC; 92 (6): 462-468	5	14	5	47
1080	603 Saha S, Bardelli A, Buckhaults P, Velculescu VE, Rago C, et al. A phosphatase associated with metastasis of colorectal cancer SCIENCE. 2001 NOV 9; 294 (5545): 1343-1346	5	238	2	24
#	Date / Author / Journal	LCS	GCS	LCR	CR
1081	606 McKusick VA The anatomy of the human genome - A neo-Vesalian basis for medicine in the 21st century JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION. 2001 NOV 14; 286 (18): 2289-2295	5	25	2	62
1082	608 Collins FS, Guttmacher AE Genetics moves into the medical mainstream JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION. 2001 NOV 14; 286 (18): 2322-2324	5	41	4	21
1083	639 Walke DW, Han CS, Shaw J, Wann E, Zambrowicz B, et al. In vivo drug target discovery: identifying the best targets from the genome CURRENT OPINION IN BIOTECHNOLOGY. 2001 DEC; 12 (6): 626-631	5	24	2	24
1084	640 Segal DJ, Barbas CF Custom DNA-binding proteins come of age: polydactyl zinc-finger proteins CURRENT OPINION IN BIOTECHNOLOGY. 2001 DEC; 12 (6): 632-637	5	43	3	43
1085	698 Ko MSH Embryogenomics: developmental biology meets genomics TRENDS IN BIOTECHNOLOGY. 2001 DEC; 19 (12): 511-518	5	37	3	69
1086	785 Yerle M, Pinton P, Delcros C, Arnal N, Milan D, et al. Generation and characterization of a 12,,000-rad radiation hybrid panel for fine mapping in pig CYTOGENETIC AND GENOME RESEARCH. 2002; 97 (3-4): 219-228	5	41	3	26
1087	872 Pujana MA, Nadal M, Guitart M, Armengol L, Gratacos M, et al. Human chromosome 15q11-q14 regions of rearrangements contain clusters of LCR15 duplicons EUROPEAN JOURNAL OF HUMAN GENETICS. 2002 JAN; 10 (1): 26-35	5	30	3	49
1088	878 Bolshakov VN, Topalis P, Blass C, Kokoza E, della Torre A, et al. A comparative genomic analysis of two distant diptera, the fruit fly, Drosophila melanogaster, and the malaria mosquito, Anopheles gambiae GENOME RESEARCH. 2002 JAN; 12 (1): 57-66	5	32	1	57
1089	904 Coward E, Haas SA, Vingron M SpliceNest: visualizing gene structure and alternative splicing based on EST clusters TRENDS IN GENETICS. 2002 JAN; 18 (1): 53-55	5	29	2	12
1090	974 Lim WA The modular logic of signaling proteins: building allosteric switches from simple binding domains CURRENT OPINION IN STRUCTURAL BIOLOGY. 2002 FEB; 12 (1): 61-68	5	61	2	50
#	Date / Author / Journal	LCS	GCS	LCR	CR
1091	979 Suzuki H, Jin Y, Otani H, Yasuda K, Inoue K Regulation of alternative splicing of alpha-actinin transcript by Bruno-like proteins GENES TO CELLS. 2002 FEB; 7 (2): 133-141	5	38	2	32
1092	981 Belle EMS, Eyre-Walker A A test of whether selection maintains isochores using sites polymorphic for Alu and L1 element insertions GENETICS. 2002 FEB; 160 (2): 815-817	5	5	3	22
1093	1003 Beerli RR, Barbas CF Engineering polydactyl zinc-finger transcription factors NATURE BIOTECHNOLOGY. 2002 FEB; 20 (2): 135-141	5	140	3	60
1094	1008 Arap W, Kolonin MG, Trepel M, Lahdenranta J, Cardo-Vila M, et al. Steps toward mapping the human vasculature by phage display NATURE MEDICINE. 2002 FEB; 8 (2): 121-127	5	233	2	35
1095	1015 Bromham L The human zoo: endogenous retroviruses in the human genome TRENDS IN ECOLOGY & EVOLUTION. 2002 FEB; 17 (2): 91-97	5	15	4	45
1096	1023 Liu B, Huang L, Sihlbom C, Burlingame A, Marks JD Towards proteome-wide production of monoclonal antibody by phage display JOURNAL OF MOLECULAR BIOLOGY. 2002 FEB 1; 315 (5): 1063-1073	5	60	2	53
1097	1107 Croston GE Functional cell-based uHTS in chemical genomic drug discovery TRENDS IN BIOTECHNOLOGY. 2002 MAR; 20 (3): 110-115	5	29	3	38
1098	1121 McCluskey A, Sim ATR, Sakoff JA Serine-threonine protein phosphatase inhibitors: Development of potential therapeutic strategies JOURNAL OF MEDICINAL CHEMISTRY. 2002 MAR 14; 45 (6): 1151-1175	5	102	1	327
1099	1165 Kawasaki H, Onuki R, Suyama E, Taira K Identification of genes that function in the TNF-alpha-mediated apoptotic pathway using randomized hybrid ribozyme libraries NATURE BIOTECHNOLOGY. 2002 APR; 20 (4): 376-380	5	49	2	34
1100	1202 Portis JL Perspectives on the role of endogenous human retroviruses in autoimmune diseases VIROLOGY. 2002 APR 25; 296 (1): 1-5	5	22	2	44

Date / Author / Journal

LCS

GCS

LCR

1001

3423 Hui LJ, Zhang X, Wu X, Lin ZX, Wang QK, et al.

Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment

ONCOGENE. 2004 APR 15; 23 (17): 3013-3023

1002

3552 Lopez-Bigas N, Ouzounis CA

Genome-wide identification of genes likely to be involved in human genetic disease

NUCLEIC ACIDS RESEARCH. 2004 JUN; 32 (10): 3108-3114

1003

3621 Krzywinski M, Bosdet I, Smailus D, Chiu R, Mathewson C, et al.

A set of BAC clones spanning the human genome

NUCLEIC ACIDS RESEARCH. 2004 JUL; 32 (12): 3651-3660

1004

3738 Feschotte C

Merlin, a new superfamily of DNA transposons identified in diverse animal genomes and related to bacterial IS1016 insertion sequences

MOLECULAR BIOLOGY AND EVOLUTION. 2004 SEP; 21 (9): 1769-1780

1005

3778 Furey TS, Diekhans M, Lu YT, Graves TA, Oddy L, et al.

Analysis of human mRNAs with the reference genome sequence reveals potent errors, polymorphisms, and RNA editing

GENOME RESEARCH. 2004 OCT; 14 (10B): 2034-2040

1006

3779 Messina DN, Glasscock J, Gish W, Lovett M

An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression

GENOME RESEARCH. 2004 OCT; 14 (10B): 2041-2047

1007

3801 Armbruester V, Sauter M, Roemer K, Best B, Hahn S, et al.

Np9 protein of human endogenous retrovirus K interacts with ligand of numb protein X

JOURNAL OF VIROLOGY. 2004 OCT; 78 (19): 10310-10319

1008

3824 Stein LD

Human genome - End of the beginning

NATURE. 2004 OCT 21; 431 (7011): 915-916

1009

3935 Neafsey DE, Blumenstiel JP, Hartl DL

Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies

MOLECULAR BIOLOGY AND EVOLUTION. 2004 DEC; 21 (12): 2310-2318

1010

3962 Goff SP

Retrovirus restriction factors

MOLECULAR CELL. 2004 DEC 22; 16 (6): 849-859

107

113

Date / Author / Journal

LCS

GCS

LCR

1011

4023 Biemont C, Vieira C

What transposable elements tell us about genome organization and evolution: the case of Drosophila

CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 25-34

176

1012

4026 Jurka J, Kohany O, Pavlicek A, Kapitonov VV, Jurka MV

Clustering, duplication and chromosomal distribution of mouse SINE retrotransposons

CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 117-123

1013

4039 Grahn RA, Rinehart TA, Cantrell MA, Wichman HA

Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents

CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 407-415

1014

4083 Vinogradov AE

Noncoding DNA, isochores and gene expression: nucleosome formation potential

NUCLEIC ACIDS RESEARCH. 2005; 33 (2): 559-563

1015

4202 Ho HJ, Ray DA, Salem AH, Myers JS, Batzer MA

Straightening out the LINEs: LINE-1 orthologous loci

GENOMICS. 2005 FEB; 85 (2): 201-207

1016

4220 Allegrucci C, Thurston A, Lucas E, Young L

Epigenetics and the germline

REPRODUCTION. 2005 FEB; 129 (2): 137-149

148

1017

4225 Chiesl TN, Shi W, Barron AE

Poly(acrylamide-co-alkylacrylamides) for electrophoretic DNA purification in microchannels

ANALYTICAL CHEMISTRY. 2005 FEB 1; 77 (3): 772-779

1018

4248 Miskey C, Izsvak Z, Kawakami K, Ivics Z

DNA transposons in vertebrate functional genomics

CELLULAR AND MOLECULAR LIFE SCIENCES. 2005 MAR; 62 (6): 629-641

1019

4260 Dahary D, Elroy-Stein O, Sorek R

Naturally occurring antisense: Transcriptional leakage or real overlap?

GENOME RESEARCH. 2005 MAR; 15 (3): 364-368

1020

4330 Churakov G, Smit AFA, Brosius J, Schmitz B

A novel abundant family of retroposed elements (DAS-SINEs) in the nine-banded armadillo (Dasypus novemcinctus)

MOLECULAR BIOLOGY AND EVOLUTION. 2005 APR; 22 (4): 886-893

Date / Author / Journal

LCS

GCS

LCR

1021

4345 Dror G, Sorek R, Shamir R

Accurate identification of alternatively spliced exons using support vector machine

BIOINFORMATICS. 2005 APR 1; 21 (7): 897-901

1022

4412 Price AL, Jones NC, Pevzner PA

De novo identification of repeat families in large genomes

BIOINFORMATICS. 2005 JUN; 21: I351-I358

1023

4510 Touchon M, Nicolay S, Audit B, Brodie Brodie EB, d'Aubenton-Carafa Y, et al.

Replication-associated strand asymmetries in mammalian genomes: Toward detection of replication origins

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 JUL 12; 102 (28): 9836-9841

1024

4574 Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, et al.

The zebrafish gene map defines ancestral vertebrate chromosomes

GENOME RESEARCH. 2005 SEP; 15 (9): 1307-1314

141

1025

4695 Mayer J, Stuhr T, Reus K, Maldener E, Kitova M, et al.

Haplotype analysis of the human endogenous retrovirus locus HERV-K(HML-2.HOM) and its evolutionary implications

JOURNAL OF MOLECULAR EVOLUTION. 2005 NOV; 61 (5): 706-715

1026

4758 Clay O, Bernardi G

How not to search for isochores: A reply to Cohen et al.

MOLECULAR BIOLOGY AND EVOLUTION. 2005 DEC; 22 (12): 2315-2317

1027

4764 Haberer G, Young S, Bharti AK, Gundlach H, Raymond C, et al.

Structure and architecture of the maize genome

PLANT PHYSIOLOGY. 2005 DEC; 139 (4): 1612-1624

1028

4779 Dunn CA, de Lagemaat LNV, Baillie GJ, Mager DL

Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: The case of primate beta 3GAL-T5

GENE. 2005 DEC 30; 364: 2-12

1029

4881 Hasler J, Strub K

Alu RNP and Alu RNA regulate translation initiation in vitro

NUCLEIC ACIDS RESEARCH. 2006; 34 (8): 2374-2385

1030

4959 Nusbaum C, Mikkelsen TS, Zody MC, Asakawa S, Taudien S, et al.

DNA sequence and analysis of human chromosome 8

NATURE. 2006 JAN 19; 439 (7074): 331-335

Date / Author / Journal

LCS

GCS

LCR

1031

5006 Surgand JS, Rodrigo J, Kellenberger E, Rognan D

A chemogenomic analysis of the transmembrane binding cavity of human G-protein-coupled receptors

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. 2006 FEB 1; 62 (2): 509-538

198

1032

5131 Kawahara Y, Nishikura K

Extensive adenosine-to-inosine editing detected in Alu repeats of antisense RNAs reveals scarcity of sense-antisense duplex formation

FEBS LETTERS. 2006 APR 17; 580 (9): 2301-2305

1033

5139 Muzny DM, Scherer SE, Kaul R, Wang J, Yu J, et al.

The DNA sequence, annotation and analysis of human chromosome 3

NATURE. 2006 APR 27; 440 (7088): 1194-1198

1034

5213 Zavolan M, van Nimwegen E

The types and prevalence of alternative splice forms

CURRENT OPINION IN STRUCTURAL BIOLOGY. 2006 JUN; 16 (3): 362-367

1035

5228 Khelifi A, Meunier J, Duret L, Mouchiroud D

GC content evolution of the human and mouse genomes: Insights from the study of processed pseudogenes in regions of different recombination rates

JOURNAL OF MOLECULAR EVOLUTION. 2006 JUN; 62 (6): 745-752

1036

5304 Chen JC, Rattner A, Nathans J

Effects of L1 retrotransposon insertion on transcript processing, localization and accumulation: lessons from the retinal degeneration 7 mouse and implications for the genomic ecology of L1 elements

HUMAN MOLECULAR GENETICS. 2006 JUL 1; 15 (13): 2146-2156

1037

5385 Carninci P

Tagging mammalian transcription complexity

TRENDS IN GENETICS. 2006 SEP; 22 (9): 501-510

1038

5429 Neeman Y, Levanon EY, Jantsch MF, Eisenberg E

RNA editing level in the mouse is determined by the genomic repeat repertoire

RNA-A PUBLICATION OF THE RNA SOCIETY. 2006 OCT; 12 (10): 1802-1809

1039

5437 Wu SCY, Meir YJJ, Coates CJ, Handler AM, Pelczar P, et al.

piggyBac is a flexible and highly active transposon as compared to Sleeping Beauty, Tol2 and Mos1 in mammalian cells

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 OCT 10; 103 (41): 15008-15013

1040

5498 Fiegler H, Redon R, Andrews D, Scott C, Andrews R, et al.

Accurate and reliable high-throughput detection of copy number variation in the human genome

GENOME RESEARCH. 2006 DEC; 16 (12): 1566-1574

Date / Author / Journal

LCS

GCS

LCR

1041

5542 Duret L, Eyre-Walker A, Galtier N

A new perspective on isochore evolution

GENE. 2006 DEC 30; 385: 71-74

1042

5662 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al.

New developments in the InterPro database

NUCLEIC ACIDS RESEARCH. 2007 JAN; 35: D224-D228

200

1043

5703 Cho NY, Kim BH, Yoo EJ, Moon KC, Cho YM, et al.

Hypermethylation of CpG island loci and hypomethylation of LINE-I and Alu repeats in prostate adenocarcinoma and their relationship to clinicopathological features

JOURNAL OF PATHOLOGY. 2007 FEB; 211 (3): 269-277

1044

5727 Bernstein BE, Meissner A, Lander ES

The mammalian epigenome

CELL. 2007 FEB 23; 128 (4): 669-681

260

1045

5750 Ray DA, Pagan HJT, Thompson ML, Stevens RD

Bats with hATs: Evidence for recent DNA transposon activity in genus Myotis

MOLECULAR BIOLOGY AND EVOLUTION. 2007 MAR; 24 (3): 632-639

1046

5806 Pritham EJ, Putliwala T, Feschotte C

Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses

GENE. 2007 APR 1; 390 (1-2): 3-17

1047

5863 Mattick JS

A new paradigm for developmental biology

JOURNAL OF EXPERIMENTAL BIOLOGY. 2007 MAY 1; 210 (9): 1526-1547

367

1048

5995 Sperber GO, Airola T, Jern P, Blomberg J

Automated recognition of retroviral sequences in genomic data - RetroTector (c)

NUCLEIC ACIDS RESEARCH. 2007 AUG; 35 (15): 4964-4976

1049

6085 Estivill X, Armengol L

Copy number variants and common disorders: Filling the gaps and exploring complexity in genome-wide association studies

PLOS GENETICS. 2007 OCT; 3 (10): 1787-1799

1050

6086 Han K, Lee J, Meyer TJ, Wang J, Sen SK, et al.

Alu recombination-mediated structural deletions in the chimpanzee genome

PLOS GENETICS. 2007 OCT; 3 (10): 1939-1949

Date / Author / Journal

LCS

GCS

LCR

1051

6106 Muotri AR, Marchetto MCN, Coufal NG, Gage FH

The necessary junk: new functions for transposable elements

HUMAN MOLECULAR GENETICS. 2007 OCT 15; 16: R159-R167

1052

6193 Jern P, Coffin JM

Effects of Retroviruses on Host Genome Function

ANNUAL REVIEW OF GENETICS. 2008; 42: 709-732

131

1053

6347 Conley AB, Miller WJ, Jordan IK

Human cis natural antisense transcripts initiated by transposable elements

TRENDS IN GENETICS. 2008 FEB; 24 (2): 53-56

1054

6407 Belancio VP, Roy-Engel AM, Deininger P

The impact of multiple splice sites in human L1 elements

GENE. 2008 MAR 31; 411 (1-2): 38-45

1055

6545 Putnam NH, Butts T, Ferrier DEK, Furlong RF, Hellsten U, et al.

The amphioxus genome and the evolution of the chordate karyotype

NATURE. 2008 JUN 19; 453 (7198): 1064-U3

142

1056

26 Caballero OL, de Souza SJ, Brentani RR, Simpson AJG

Alternative spliced transcripts as cancer markers

DISEASE MARKERS. 2001; 17 (2): 67-75

1057

148 Lupas AN, Ponting CP, Russell RB

On the evolution of protein folds: Are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?

JOURNAL OF STRUCTURAL BIOLOGY. 2001 MAY-JUN; 134 (2-3): 191-203

1058

166 Hooper LV, Gordon JI

Commensal host-bacterial relationships in the gut

SCIENCE. 2001 MAY 11; 292 (5519): 1115-1118

436

1059

178 Sreekumar KR, Aravind L, Koonin EV

Computational analysis of human disease-associated genes and their protein products

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2001 JUN; 11 (3): 247-257

100

1060

182 Voss SR, Smith JJ, Gardiner DM, Parichy DM

Conserved vertebrate chromosome segments in the large salamander genome

GENETICS. 2001 JUN; 158 (2): 735-746

Date / Author / Journal

1061

The ins and outs of signalling

NATURE. 2001 JUN 14; 411 (6839): 759-762

1062

211 Rannala B, Reeve JP

High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence

AMERICAN JOURNAL OF HUMAN GENETICS. 2001 JUL; 69 (1): 159-178

1063

221 Cuadrado M, Sacristan M, Antequera F

Species-specific organization of CpG island promoters at mammalian homologous genes

EMBO REPORTS. 2001 JUL; 2 (7): 586-592

1064

235 Hesse M, Magin TM, Weber K

Genes for intermediate filament proteins and the draft sequence of the human genome: novel keratin genes and a surprisingly high number of pseudogenes related to keratin genes 8 and 18

JOURNAL OF CELL SCIENCE. 2001 JUL; 114 (14): 2569-2575

153

1065

246 Kinoshita K, Honjo T

Linking class-switch recombination with somatic hypermutation

NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2001 JUL; 2 (7): 493-503

105

1066

250 Lesley SA

High-throughput proteomics: Protein expression and purification in the postgenomic world

PROTEIN EXPRESSION AND PURIFICATION. 2001 JUL; 22 (2): 159-164

1067

254 Maggio ET, Ramnarayan K

Recent developments in computational proteomics

TRENDS IN BIOTECHNOLOGY. 2001 JUL; 19 (7): 266-272

1068

270 Feschotte C, Wessler SR

Treasures in the attic: Rolling circle transposons discovered in eukaryotic genomes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 JUL 31; 98 (16): 8923-8924

1069

287 Yu YT, Zhang CG, Zhou GQ, Wu SF, Qu XH, et al.

Gene expression profiling in human fetal liver and identification of tissue-and developmental-stage-specific genes through compiled expression profiles and efficient cloning of full-length cDNAs

GENOME RESEARCH. 2001 AUG; 11 (8): 1392-1403

1070

300 Llorens C, Marin I

A mammalian gene evolved from the integrase domain of an LTR retrotransposon

MOLECULAR BIOLOGY AND EVOLUTION. 2001 AUG; 18 (8): 1597-1600

Date / Author / Journal

1071

Faster, better, cheaper genotyping

NATURE. 2001 AUG 9; 412 (6847): 580-582

1072

380 Kondo S, Shinagawa A, Saito T, Kiyosawa H, Yamanaka I, et al.

Computational analysis of full-length mouse cDNAs compared with human genome sequences

MAMMALIAN GENOME. 2001 SEP; 12 (9): 673-677

1073

437 Cremer M, von Hase J, Volm T, Brero A, Kreth G, et al.

Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells

CHROMOSOME RESEARCH. 2001 OCT; 9 (7): 541-567

150

1074

486 Robinson-Rechavi M, Carpentier AS, Duffraisse M, Laudet V

How many nuclear hormone receptors are there in the human genome?

TRENDS IN GENETICS. 2001 OCT; 17 (10): 554-556

1075

487 Mira A, Ochman H, Moran NA

Deletional bias and the evolution of bacterial genomes

TRENDS IN GENETICS. 2001 OCT; 17 (10): 589-596

193

1076

490 Knaust RKC, Nordlund P

Screening for soluble expression of recombinant proteins in a 96-well format

ANALYTICAL BIOCHEMISTRY. 2001 OCT 1; 297 (1): 79-85

1077

502 Miller MP, Kumar S

Understanding human disease mutations through the use of interspecific genetic variation

HUMAN MOLECULAR GENETICS. 2001 OCT 2; 10 (21): 2319-2328

115

1078

541 Cravchik A, Subramanian G, Broder S, Venter JC

Sequence analysis of the human genome - Implications for the understanding of nervous system function and disease

ARCHIVES OF NEUROLOGY. 2001 NOV; 58 (11): 1772-1778

1079

569 Eichler EE, Johnson ME, Alkan C, Tuzun E, Sahinalp C, et al.

Divergent origins and concerted expansion of two segmental duplications on chromosome 16

JOURNAL OF HEREDITY. 2001 NOV-DEC; 92 (6): 462-468

1080

603 Saha S, Bardelli A, Buckhaults P, Velculescu VE, Rago C, et al.

A phosphatase associated with metastasis of colorectal cancer

SCIENCE. 2001 NOV 9; 294 (5545): 1343-1346

238

Date / Author / Journal

1081

The anatomy of the human genome - A neo-Vesalian basis for medicine in the 21st century

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION. 2001 NOV 14; 286 (18): 2289-2295

1082

608 Collins FS, Guttmacher AE

Genetics moves into the medical mainstream

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION. 2001 NOV 14; 286 (18): 2322-2324

1083

639 Walke DW, Han CS, Shaw J, Wann E, Zambrowicz B, et al.

In vivo drug target discovery: identifying the best targets from the genome

CURRENT OPINION IN BIOTECHNOLOGY. 2001 DEC; 12 (6): 626-631

1084

640 Segal DJ, Barbas CF

Custom DNA-binding proteins come of age: polydactyl zinc-finger proteins

CURRENT OPINION IN BIOTECHNOLOGY. 2001 DEC; 12 (6): 632-637

1085

698 Ko MSH

Embryogenomics: developmental biology meets genomics

TRENDS IN BIOTECHNOLOGY. 2001 DEC; 19 (12): 511-518

1086

785 Yerle M, Pinton P, Delcros C, Arnal N, Milan D, et al.

Generation and characterization of a 12,,000-rad radiation hybrid panel for fine mapping in pig

CYTOGENETIC AND GENOME RESEARCH. 2002; 97 (3-4): 219-228

1087

872 Pujana MA, Nadal M, Guitart M, Armengol L, Gratacos M, et al.

Human chromosome 15q11-q14 regions of rearrangements contain clusters of LCR15 duplicons

EUROPEAN JOURNAL OF HUMAN GENETICS. 2002 JAN; 10 (1): 26-35

1088

878 Bolshakov VN, Topalis P, Blass C, Kokoza E, della Torre A, et al.

A comparative genomic analysis of two distant diptera, the fruit fly, Drosophila melanogaster, and the malaria mosquito, Anopheles gambiae

GENOME RESEARCH. 2002 JAN; 12 (1): 57-66

1089

904 Coward E, Haas SA, Vingron M

SpliceNest: visualizing gene structure and alternative splicing based on EST clusters

TRENDS IN GENETICS. 2002 JAN; 18 (1): 53-55

1090

974 Lim WA

The modular logic of signaling proteins: building allosteric switches from simple binding domains

CURRENT OPINION IN STRUCTURAL BIOLOGY. 2002 FEB; 12 (1): 61-68

Date / Author / Journal

LCS

GCS

LCR

1091

979 Suzuki H, Jin Y, Otani H, Yasuda K, Inoue K

Regulation of alternative splicing of alpha-actinin transcript by Bruno-like proteins

GENES TO CELLS. 2002 FEB; 7 (2): 133-141

1092

981 Belle EMS, Eyre-Walker A

A test of whether selection maintains isochores using sites polymorphic for Alu and L1 element insertions

GENETICS. 2002 FEB; 160 (2): 815-817

1093

1003 Beerli RR, Barbas CF

Engineering polydactyl zinc-finger transcription factors

NATURE BIOTECHNOLOGY. 2002 FEB; 20 (2): 135-141

140

1094

1008 Arap W, Kolonin MG, Trepel M, Lahdenranta J, Cardo-Vila M, et al.

Steps toward mapping the human vasculature by phage display

NATURE MEDICINE. 2002 FEB; 8 (2): 121-127

233

1095

1015 Bromham L

The human zoo: endogenous retroviruses in the human genome

TRENDS IN ECOLOGY & EVOLUTION. 2002 FEB; 17 (2): 91-97

1096

1023 Liu B, Huang L, Sihlbom C, Burlingame A, Marks JD

Towards proteome-wide production of monoclonal antibody by phage display

JOURNAL OF MOLECULAR BIOLOGY. 2002 FEB 1; 315 (5): 1063-1073

1097

1107 Croston GE

Functional cell-based uHTS in chemical genomic drug discovery

TRENDS IN BIOTECHNOLOGY. 2002 MAR; 20 (3): 110-115

1098

1121 McCluskey A, Sim ATR, Sakoff JA

Serine-threonine protein phosphatase inhibitors: Development of potential therapeutic strategies

JOURNAL OF MEDICINAL CHEMISTRY. 2002 MAR 14; 45 (6): 1151-1175

102

327

1099

1165 Kawasaki H, Onuki R, Suyama E, Taira K

Identification of genes that function in the TNF-alpha-mediated apoptotic pathway using randomized hybrid ribozyme libraries

NATURE BIOTECHNOLOGY. 2002 APR; 20 (4): 376-380

1100

1202 Portis JL

Perspectives on the role of endogenous human retroviruses in autoimmune diseases

VIROLOGY. 2002 APR 25; 296 (1): 1-5

Initial sequencing and analysis of the human genome (Lander) The papers citing Lander ES, et al. "Initial sequencing and analysis of the human genome." NATURE. 2001 FEB 15; 409 (6822): 860-921	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 38623, GCS 253809, CR 422506 Collection span: 2000 - 2010
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