HistCite - Initial sequencing and analysis of the human genome (Lander)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
701	5813 Lebedev YB, Amosova AL, Mamedov IZ, Fisunov GY, Sverdlov ED Most recent AluY insertions in human gene introns reduce the content of the primary transcripts in a cell type specific manner GENE. 2007 APR 1; 390 (1-2): 122-129	4	4	12	28
702	5897 Denoeud F, Kapranov P, Ucla C, Frankish A, Castelo R, et al. Prominent use of distal 5 ' transcription start sites and discovery of a large number of additional exons in ENCODE regions GENOME RESEARCH. 2007 JUN; 17 (6): 746-759	11	52	12	35
703	5917 Haiminen N, Mannila H Discovering isochores by least-squares optimal segmentation GENE. 2007 JUN 1; 394 (1-2): 53-60	1	2	12	31
704	6006 Piriyapongsa J, Polavarapu N, Borodovsky M, McDonald J Exonization of the LTR transposable elements in human genome BMC GENOMICS. 2007 AUG 28; 8: Art. No. 291	4	9	12	37
705	6028 Belshaw R, Watson J, Katzourakis A, Howe A, Woolven-Allen J, et al. Rate of recombinational deletion among human endogenous retroviruses JOURNAL OF VIROLOGY. 2007 SEP; 81 (17): 9437-9442	5	10	12	40
706	6216 Cole CG, McCann OT, Collins JE, Oliver K, Willey D, et al. Finishing the finished human chromosome 22 sequence GENOME BIOLOGY. 2008; 9 (5): Art. No. R78	0	1	12	42
707	6221 Tsipouri V, Schueler MG, Hu SF, Dutra A, Pak E, et al. Comparative sequence analyses reveal sites of ancestral chromosomal fusions in the Indian muntjac genome GENOME BIOLOGY. 2008; 9 (10): Art. No. R155	0	1	12	62
708	6258 Boeke JD, An WF, Dai LX, Davis ES, Han JS, et al. Retrotransposons - Natural and synthetic RETROTRANSPOSITION, DIVERSITY AND THE BRAIN. 2008; : 21-32	0	0	12	34
709	6280 Chen JM, Masson E, Macek M, Raguenes O, Piskackova T, et al. Detection of two Alu insertions in the CFTR gene JOURNAL OF CYSTIC FIBROSIS. 2008 JAN; 7 (1): 37-43	2	3	12	38
710	6290 Nickel GC, Tefft D, Adams MD Human PAML browser: a database of positive selection on human genes using phylogenetic methods NUCLEIC ACIDS RESEARCH. 2008 JAN; 36: D800-D808	0	7	12	44
#	Date / Author / Journal	LCS	GCS	LCR	CR
711	6307 Bush EC, Lahn BT A genome-wide screen for noncoding elements important in primate evolution BMC EVOLUTIONARY BIOLOGY. 2008 JAN 23; 8: Art. No. 17	1	3	12	39
712	6347 Conley AB, Miller WJ, Jordan IK Human cis natural antisense transcripts initiated by transposable elements TRENDS IN GENETICS. 2008 FEB; 24 (2): 53-56	6	14	12	25
713	6352 Wang GS, Wang MW, Wu BY, Yang XY, Wang WH, et al. LINE-1 family member GCRG123 gene is up-regulated in human gastric signet-ring cell carcinoma WORLD JOURNAL OF GASTROENTEROLOGY. 2008 FEB 7; 14 (5): 758-763	0	0	12	46
714	6371 Tan K, Tegner J, Ravasi T Integrated approaches to uncovering transcription regulatory networks in mammalian cells GENOMICS. 2008 MAR; 91 (3): 219-231	1	5	12	132
715	6521 Short S, Holland LZ The evolution of alternative splicing in the Pax family: The view from the basal chordate amphioxus JOURNAL OF MOLECULAR EVOLUTION. 2008 JUN; 66 (6): 605-620	0	2	12	101
716	6648 Armitage AE, Katzourakis A, de Oliveira T, Welch JJ, Belshaw R, et al. Conserved footprints of APOBEC3G on hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences JOURNAL OF VIROLOGY. 2008 SEP; 82 (17): 8743-8761	1	6	12	91
717	6763 Fredlake CP, Hert DG, Root BE, Barron AE Polymer systems designed specifically for DNA sequencing by microchip electrophoresis: A comparison with commercially available materials ELECTROPHORESIS. 2008 DEC; 29 (23): 4652-4662	1	1	12	46
718	6774 Brandstrom M, Bagshaw AT, Gemmell NJ, Ellegren H The Relationship Between Microsatellite Polymorphism and Recombination Hot Spots in the Human Genome MOLECULAR BIOLOGY AND EVOLUTION. 2008 DEC; 25 (12): 2579-2587	0	0	12	65
719	6808 Morozova O, Hirst M, Marra MA Applications of New Sequencing Technologies for Transcriptome Analysis ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2009; 10: 135-151	0	0	12	103
720	6881 Dong C, Poulter RT, Han JS LINE-Like Retrotransposition in Saccharomyces cerevisiae GENETICS. 2009 JAN; 181 (1): 301-311	0	1	12	70
#	Date / Author / Journal	LCS	GCS	LCR	CR
721	7012 van Hooff SR, Koster J, Hulsen T, van Schaik BDC, Roos M, et al. The Construction of Genome-Based Transcriptional Units OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY. 2009 APR; 13 (2): 105-114	0	0	12	47
722	7141 Seidl MF, Schultz J Evolutionary flexibility of protein complexes BMC EVOLUTIONARY BIOLOGY. 2009 JUL 7; 9: Art. No. 155	0	1	12	70
723	7145 Bozdag S, Close TJ, Lonardi S A compartmentalized approach to the assembly of physical maps BMC BIOINFORMATICS. 2009 JUL 15; 10: Art. No. 217	0	0	12	39
724	7157 Ponting CP, Goodstadt L Separating derived from ancestral features of mouse and human genomes BIOCHEMICAL SOCIETY TRANSACTIONS. 2009 AUG; 37: 734-739	0	1	12	45
725	7165 Gimenez J, Montgiraud C, Oriol G, Pichon JP, Ruel K, et al. Comparative Methylation of ERVWE1/Syncytin-1 and Other Human Endogenous Retrovirus LTRs in Placenta Tissues DNA RESEARCH. 2009 AUG; 16 (4): 195-211	0	0	12	66
726	7213 Salzburger W, Steinke D, Braasch I, Meyer A Genome Desertification in Eutherians: Can Gene Deserts Explain the Uneven Distribution of Genes in Placental Mammalian Genomes? JOURNAL OF MOLECULAR EVOLUTION. 2009 SEP; 69 (3): 207-216	0	0	12	34
727	7222 Balada E, Ordi-Ros J, Vilardell-Tarres M Molecular mechanisms mediated by Human Endogenous Retroviruses (HERVs) in autoimmunity REVIEWS IN MEDICAL VIROLOGY. 2009 SEP; 19 (5): 273-286	0	0	12	103
728	7274 Zhang W, Dolan ME Use of Cell Lines in the Investigation of Pharmacogenetic Loci CURRENT PHARMACEUTICAL DESIGN. 2009 NOV; 15 (32): 3782-3795	0	0	12	147
729	7336 St Laurent G, Savva YA, Reenan R Enhancing non-coding RNA information content with ADAR editing NEUROSCIENCE LETTERS. 2009 DEC 4; 466 (2): 89-98	0	0	12	93
730	969 Copley RR, Letunic I, Bork P Genome and protein evolution in eukaryotes CURRENT OPINION IN CHEMICAL BIOLOGY. 2002 FEB; 6 (1): 39-45	0	8	11	65
#	Date / Author / Journal	LCS	GCS	LCR	CR
731	1339 Leo CP, Hsu SY, Hsueh AJW Hormonal genomics ENDOCRINE REVIEWS. 2002 JUN; 23 (3): 369-381	2	15	11	159
732	1473 Yao T Bioinformatics for the genomic sciences and towards systems biology. Japanese activities in the post-genome era PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY. 2002 JUL-AUG; 80 (1-2): 23-42	3	10	11	93
733	1924 Bentley DR DNA sequence variation of Homo sapiens COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY. 2003; 68: 55-63	1	2	11	59
734	2067 Couronne O, Poliakov A, Bray N, Ishkhanov T, Ryaboy D, et al. Strategies and tools for whole-genome alignments GENOME RESEARCH. 2003 JAN; 13 (1): 73-80	22	113	11	36
735	2158 Bashyam MD, Hasnain SE The human genome sequence: impact on health care INDIAN JOURNAL OF MEDICAL RESEARCH. 2003 FEB; 117: 43-65	0	0	11	82
736	2244 Woodage T, Broder S The human genome and comparative genomics: understanding human evolution, biology, and medicine JOURNAL OF GASTROENTEROLOGY. 2003 MAR; 38: 68-77	0	1	11	94
737	2379 Dobrin SE, Stephan DA Integrating microarrays into disease-gene identification strategies EXPERT REVIEW OF MOLECULAR DIAGNOSTICS. 2003 MAY; 3 (3): 375-385	0	7	11	76
738	2497 Strausberg RL, Simpson AJG, Wooster R Sequence-based cancer genomics: Progress, lessons and opportunities NATURE REVIEWS GENETICS. 2003 JUN; 4 (6): 409-418	4	27	11	73
739	2499 Holste D, Grosse I, Beirer S, Schieg P, Herzel H Repeats and correlations in human DNA sequences PHYSICAL REVIEW E. 2003 JUN; 67 (6): Art. No. 061913	7	27	11	69
740	2517 Casacuberta JM, Santiago N Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes GENE. 2003 JUN 5; 311: 1-11	4	51	11	104
#	Date / Author / Journal	LCS	GCS	LCR	CR
741	2568 Pennacchio LA Insights from human/mouse genome comparisons MAMMALIAN GENOME. 2003 JUL; 14 (7): 429-436	5	25	11	57
742	2589 Halees AS, Leyfer D, Weng ZP PromoSer: a large-scale mammalian promoter and transcription start site identification service NUCLEIC ACIDS RESEARCH. 2003 JUL 1; 31 (13): 3554-3559	5	36	11	37
743	2713 Engler FW, Hatfield J, Nelson W, Soderlund CA Locating sequence on FPC maps and selecting a minimal tiling path GENOME RESEARCH. 2003 SEP; 13 (9): 2152-2163	5	18	11	45
744	2767 Bailey JA, Liu G, Eichler EE An Alu transposition model for the origin and expansion of human segmental duplications AMERICAN JOURNAL OF HUMAN GENETICS. 2003 OCT; 73 (4): 823-834	75	159	11	37
745	2802 Chanock S Genetic variation and hematology: Single-nucleotide polymorphisms, haplotypes, and complex disease SEMINARS IN HEMATOLOGY. 2003 OCT; 40 (4): 321-328	0	4	11	77
746	2886 Schulze TG, McMahon FJ Genetic linkage and association studies in bipolar affective disorder: A time for optimism AMERICAN JOURNAL OF MEDICAL GENETICS PART C-SEMINARS IN MEDICAL GENETICS. 2003 NOV 15; 123C (1): 36-47	0	22	11	115
747	2904 Ostertag EM, Goodier JL, Zhang Y, Kazazian HH SVA elements are nonautonomous retrotransposons that cause disease in humans AMERICAN JOURNAL OF HUMAN GENETICS. 2003 DEC; 73 (6): 1444-1451	44	55	11	40
748	2923 Babcock M, Pavlicek A, Spiteri E, Kashork CD, Ioshikhes I, et al. Shuffling of genes within low-copy repeats on 22qll (LCR22) by Alu-mediated recombination events during evolution GENOME RESEARCH. 2003 DEC; 13 (12): 2519-2532	23	55	11	45
749	2925 Torrents D, Suyama M, Zdobnov E, Bork P A genome-wide survey of human pseudogenes GENOME RESEARCH. 2003 DEC; 13 (12): 2559-2567	32	99	11	32
750	3030 Galtier N, Bonhomme F, Moulia C, Belkhir K, Caminade P, et al. Mouse biodiversity in the genomic era CYTOGENETIC AND GENOME RESEARCH. 2004; 105 (2-4): 385-394	0	3	11	139
#	Date / Author / Journal	LCS	GCS	LCR	CR
751	3054 Lee C, Roy M Analysis of alternative splicing with microarrays: successes and challenges GENOME BIOLOGY. 2004; 5 (7): Art. No. 231	5	32	11	27
752	3072 Zheng ZM Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression JOURNAL OF BIOMEDICAL SCIENCE. 2004; 11 (3): 278-294	9	65	11	184
753	3136 Hsiang T, Baillie DL Recent progress, developments, and issues in comparative fungal genomics CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE. 2004 JAN-MAR; 26 (1): 19-30	0	4	11	113
754	3218 Emerson JJ, Kaessmann H, Betran E, Long MY Extensive gene traffic on the mammalian X chromosome SCIENCE. 2004 JAN 23; 303 (5657): 537-540	14	128	11	35
755	3442 Nachman MW, D'Agostino SL, Tillquist CR, Mobasher Z, Hammer MF Nucleotide variation at Msn and Alas2, two genes flanking the centromere of the X chromosome in humans GENETICS. 2004 MAY; 167 (1): 423-437	0	5	11	79
756	3546 Meunier J, Duret L Recombination drives the evolution of GC-content in the human genome MOLECULAR BIOLOGY AND EVOLUTION. 2004 JUN; 21 (6): 984-990	41	108	11	47
757	3600 Comeron JM Selective and mutational patterns associated with gene expression in humans: Influences on synonymous composition and intron presence GENETICS. 2004 JUL; 167 (3): 1293-1304	9	50	11	95
758	3643 Savage SA, Chanock SJ Using germ-line genetic variation to investigate and treat cancer DRUG DISCOVERY TODAY. 2004 JUL 15; 9 (14): 610-618	0	5	11	79
759	3679 Zhang R, Zhang CT Isochore structures in the genome of the plant Arabidopsis thaliana JOURNAL OF MOLECULAR EVOLUTION. 2004 AUG; 59 (2): 227-238	2	6	11	38
760	3703 Wei CL, Ng P, Chiu KP, Wong CH, Ang CC, et al. 5 ' Long serial analysis of gene expression (LongSAGE) and 3 ' LongSAGE for transcriptome characterization and genome annotation PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 AUG 10; 101 (32): 11701-11706	3	47	11	32
#	Date / Author / Journal	LCS	GCS	LCR	CR
761	3761 Schmutz J, Martin J, Terry A, Couronne O, Grimwood J, et al. The DNA sequence and comparative analysis of human chromosome 5 NATURE. 2004 SEP 16; 431 (7006): 268-274	8	32	11	44
762	3866 Jordan IK, Marino-Ramirez L, Wolf YI, Koonin EV Conservation and coevolution in the scale-free human gene coexpression network MOLECULAR BIOLOGY AND EVOLUTION. 2004 NOV; 21 (11): 2058-2070	3	66	11	55
763	3880 Yeo G, Hoon S, Venkatesh B, Burge CB Variation in sequence and organization of splicing regulatory elements in vertebrate genes PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 NOV 2; 101 (44): 15700-15705	14	85	11	42
764	3915 Dike S, Balija VS, Nascimento LU, Xuan ZY, Ou J, et al. The mouse genome: Experimental examination of gene predictions and transcriptional start sites GENOME RESEARCH. 2004 DEC; 14 (12): 2424-2429	3	10	11	24
765	4034 de Parseval N, Heidmann T Human endogenous retroviruses: from infectious elements to human genes CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 318-332	12	34	11	75
766	4062 Yeo GWM Splicing regulators: targets and drugs GENOME BIOLOGY. 2005; 6 (12): Art. No. 240	0	2	11	24
767	4219 Keightley PD, Lercher MJ, Eyre-Walker A Evidence for widespread degradation of gene control regions in hominid genomes PLOS BIOLOGY. 2005 FEB; 3 (2): Art. No. e42	0	89	11	44
768	4233 Vogel C, Teichmann SA, Pereira-Leal J The relationship between domain duplication and recombination JOURNAL OF MOLECULAR BIOLOGY. 2005 FEB 11; 346 (1): 355-365	1	42	11	46
769	4275 Fryxell KJ, Moon WJ CpG mutation rates in the human genome are highly dependent on local GC content MOLECULAR BIOLOGY AND EVOLUTION. 2005 MAR; 22 (3): 650-658	10	37	11	65
770	4346 Dunn CA, Mager DL Transcription of the human and rodent SPAM1/PH-20 genes initiates within an ancient endogenous retrovirus BMC GENOMICS. 2005 APR 1; 6: Art. No. 47	5	6	11	42
#	Date / Author / Journal	LCS	GCS	LCR	CR
771	4406 Eyras E, Reymond A, Castelo R, Bye JM, Camara F, et al. Gene finding in the chicken genome BMC BIOINFORMATICS. 2005 MAY 30; 6: Art. No. 131	5	17	11	33
772	4543 Jun Y, Oiang BQ, Zhu C, Yang HM, Chinese Human Genome Consortium "Beijing Region" (3pter-D3S3397) of the Human Genome: Complete sequence and analysis SCIENCE IN CHINA SERIES C-LIFE SCIENCES. 2005 AUG; 48 (4): 311-329	1	1	11	68
773	4571 Antonell A, de Luis O, Domingo-Roura X, Perez-Jurado LA Evolutionary mechanisms shaping the genomic structure of the Williams-Beuren syndrome chromosomal region at human 7q11.23 GENOME RESEARCH. 2005 SEP; 15 (9): 1179-1188	5	23	11	52
774	4713 Kulpa DA, Moran JV Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition HUMAN MOLECULAR GENETICS. 2005 NOV 1; 14 (21): 3237-3248	15	28	11	46
775	4766 Zheng CL, Kwon YS, Li HR, Zhang K, Coutinho-Mansfield G, et al. MAASE: An alternative splicing database designed for supporting splicing microarray applications RNA-A PUBLICATION OF THE RNA SOCIETY. 2005 DEC; 11 (12): 1767-1776	4	12	11	29
776	4820 Scott LA, Kuroiwa A, Matsuda Y, Wichman HA X accumulation of LINE-1 retrotransposons in Tokudaia osimensis, a spiny rat with the karyotype XO CYTOGENETIC AND GENOME RESEARCH. 2006; 112 (3-4): 261-269	1	3	11	94
777	4855 Matsutani S Links between repeated sequences JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY. 2006; : Art. No. 13569	0	2	11	27
778	4879 Pichon JP, Bonnaud B, Cleuziat P, Mallet F Multiplex degenerate PCR coupled with an oligo sorbent array for human endogenous retrovirus expression profiling NUCLEIC ACIDS RESEARCH. 2006; 34 (6): Art. No. e46	4	9	11	55
779	4917 Luo MZ, Yu YS, Kim HR, Kudrna D, Itoh Y, et al. Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region GENOMICS. 2006 JAN; 87 (1): 181-190	0	13	11	50
780	4950 Thornburg BG, Gotea V, Makalowski W Transposable elements as a significant source of transcription regulating signals GENE. 2006 JAN 3; 365: 104-110	18	33	11	43
#	Date / Author / Journal	LCS	GCS	LCR	CR
781	4955 Alisch RS, Garcia-Perez JL, Muotri AR, Gage FH, Moran JV Unconventional translation of mammalian LINE-1 retrotransposons GENES & DEVELOPMENT. 2006 JAN 15; 20 (2): 210-224	7	16	11	55
782	4960 Teber ET, Crawford E, Bolton KB, Van Dyk D, Schofield PR, et al. Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration BMC BIOINFORMATICS. 2006 JAN 23; 7: Art. No. 33	0	0	11	53
783	5005 Dunn CA, Romanish MT, Gutierrez LE, van de Lagemaat LN, Mager DL Transcription of two human genes from a bidirectional endogenous retrovirus promoter GENE. 2006 FEB 1; 366 (2): 335-342	13	27	11	30
784	5084 Vij S, Gupta V, Kumar D, Vydianathan R, Raghuvanshi S, et al. Decoding the rice genome BIOESSAYS. 2006 APR; 28 (4): 421-432	1	14	11	101
785	5186 Comeron JM Weak selection and recent mutational changes influence polymorphic synonymous mutations in humans PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAY 2; 103 (18): 6940-6945	1	11	11	85
786	5329 MacNeil A, Sankale JL, Meloni ST, Sarr AD, Mboup S, et al. Genomic sites of human immunodeficiency virus type 2 (HIV-2) integration: Similarities to HIV-1 in vitro and possible differences in vivo JOURNAL OF VIROLOGY. 2006 AUG; 80 (15): 7316-7321	2	13	11	42
787	5351 Smith JJ, Voss SR Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution BMC GENOMICS. 2006 AUG 29; 7: Art. No. 219	2	7	11	64
788	5379 Spencer CCA, Deloukas P, Hunt S, Mullikin J, Myers S, et al. The influence of recombination on human genetic diversity PLOS GENETICS. 2006 SEP; 2 (9): Art. No. e148	0	41	11	54
789	5415 Le Rouzic A, Capy P Population genetics models of competition between transposable element subfamilies GENETICS. 2006 OCT; 174 (2): 785-793	3	8	11	64
790	5426 Nomura Y, Kajikawa M, Baba S, Nakazato S, Imai T, et al. Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2 NUCLEIC ACIDS RESEARCH. 2006 OCT; 34 (18): 5184-5193	0	2	11	47
#	Date / Author / Journal	LCS	GCS	LCR	CR
791	5489 Zhou Q, Huang L, Zhang JG, Zhao XY, Zhang QP, et al. Comparative genomic analysis links karyotypic evolution with genomic evolution in the Indian Muntjac (Muntiacus muntjak vaginalis) CHROMOSOMA. 2006 DEC; 115 (6): 427-436	1	2	11	58
792	5564 Reddy ASN Alternative splicing of pre-messenger RNAs in plants in the genomic era ANNUAL REVIEW OF PLANT BIOLOGY. 2007; 58: 267-294	2	57	11	138
793	5581 Wang Y, Fong PY, Leung FCC, Mak W, Sham PC Increased gene coverage and Alu frequency in large linkage disequilibrium blocks of the human genome GENETICS AND MOLECULAR RESEARCH. 2007; 6 (4): 1131-1141	0	0	11	32
794	5640 Sasaki T, Shimizu A, Ishikawa SK, Imai S, Asakawa S, et al. The DNA sequence of medaka chromosome LG22 GENOMICS. 2007 JAN; 89 (1): 124-133	1	6	11	33
795	5653 Kaiser VB, van Tuinen M, Ellegren H Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds MOLECULAR BIOLOGY AND EVOLUTION. 2007 JAN; 24 (1): 338-347	0	10	11	71
796	5663 Kim E, Magen A, Ast G Different levels of alternative splicing among eukaryotes NUCLEIC ACIDS RESEARCH. 2007 JAN; 35 (1): 125-131	18	76	11	34
797	5673 Feng WJN, Liu JS, Rycaj K, Huang M, Tsai K, et al. Expression of multiple human endogenous retrovirus surface envelope proteins in ovarian cancer INTERNATIONAL JOURNAL OF CANCER. 2007 JAN 1; 120 (1): 81-90	0	0	11	56
798	5674 Premzl M, Gamulin V Comparative genomic analysis of prion genes BMC GENOMICS. 2007 JAN 2; 8: Art. No. 1	0	14	11	44
799	5707 Hoffman MM, Birney E Estimating the neutral rate of nucleotide substitution using introns MOLECULAR BIOLOGY AND EVOLUTION. 2007 FEB; 24 (2): 522-531	0	6	11	58
800	5712 Visel A, Bristow J, Pennacchio LA Enhancer identification through comparative genomics SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY. 2007 FEB; 18 (1): 140-152	1	12	11	85

Date / Author / Journal

LCS

GCS

LCR

701

5813 Lebedev YB, Amosova AL, Mamedov IZ, Fisunov GY, Sverdlov ED

Most recent AluY insertions in human gene introns reduce the content of the primary transcripts in a cell type specific manner

GENE. 2007 APR 1; 390 (1-2): 122-129

702

5897 Denoeud F, Kapranov P, Ucla C, Frankish A, Castelo R, et al.

Prominent use of distal 5 ' transcription start sites and discovery of a large number of additional exons in ENCODE regions

GENOME RESEARCH. 2007 JUN; 17 (6): 746-759

703

5917 Haiminen N, Mannila H

Discovering isochores by least-squares optimal segmentation

GENE. 2007 JUN 1; 394 (1-2): 53-60

704

6006 Piriyapongsa J, Polavarapu N, Borodovsky M, McDonald J

Exonization of the LTR transposable elements in human genome

BMC GENOMICS. 2007 AUG 28; 8: Art. No. 291

705

6028 Belshaw R, Watson J, Katzourakis A, Howe A, Woolven-Allen J, et al.

Rate of recombinational deletion among human endogenous retroviruses

JOURNAL OF VIROLOGY. 2007 SEP; 81 (17): 9437-9442

706

6216 Cole CG, McCann OT, Collins JE, Oliver K, Willey D, et al.

Finishing the finished human chromosome 22 sequence

GENOME BIOLOGY. 2008; 9 (5): Art. No. R78

707

6221 Tsipouri V, Schueler MG, Hu SF, Dutra A, Pak E, et al.

Comparative sequence analyses reveal sites of ancestral chromosomal fusions in the Indian muntjac genome

GENOME BIOLOGY. 2008; 9 (10): Art. No. R155

708

6258 Boeke JD, An WF, Dai LX, Davis ES, Han JS, et al.

Retrotransposons - Natural and synthetic

RETROTRANSPOSITION, DIVERSITY AND THE BRAIN. 2008; : 21-32

709

6280 Chen JM, Masson E, Macek M, Raguenes O, Piskackova T, et al.

Detection of two Alu insertions in the CFTR gene

JOURNAL OF CYSTIC FIBROSIS. 2008 JAN; 7 (1): 37-43

710

6290 Nickel GC, Tefft D, Adams MD

Human PAML browser: a database of positive selection on human genes using phylogenetic methods

NUCLEIC ACIDS RESEARCH. 2008 JAN; 36: D800-D808

Date / Author / Journal

LCS

GCS

LCR

711

6307 Bush EC, Lahn BT

A genome-wide screen for noncoding elements important in primate evolution

BMC EVOLUTIONARY BIOLOGY. 2008 JAN 23; 8: Art. No. 17

712

6347 Conley AB, Miller WJ, Jordan IK

Human cis natural antisense transcripts initiated by transposable elements

TRENDS IN GENETICS. 2008 FEB; 24 (2): 53-56

713

6352 Wang GS, Wang MW, Wu BY, Yang XY, Wang WH, et al.

LINE-1 family member GCRG123 gene is up-regulated in human gastric signet-ring cell carcinoma

WORLD JOURNAL OF GASTROENTEROLOGY. 2008 FEB 7; 14 (5): 758-763

714

6371 Tan K, Tegner J, Ravasi T

Integrated approaches to uncovering transcription regulatory networks in mammalian cells

GENOMICS. 2008 MAR; 91 (3): 219-231

132

715

6521 Short S, Holland LZ

The evolution of alternative splicing in the Pax family: The view from the basal chordate amphioxus

JOURNAL OF MOLECULAR EVOLUTION. 2008 JUN; 66 (6): 605-620

101

716

6648 Armitage AE, Katzourakis A, de Oliveira T, Welch JJ, Belshaw R, et al.

Conserved footprints of APOBEC3G on hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences

JOURNAL OF VIROLOGY. 2008 SEP; 82 (17): 8743-8761

717

6763 Fredlake CP, Hert DG, Root BE, Barron AE

Polymer systems designed specifically for DNA sequencing by microchip electrophoresis: A comparison with commercially available materials

ELECTROPHORESIS. 2008 DEC; 29 (23): 4652-4662

718

6774 Brandstrom M, Bagshaw AT, Gemmell NJ, Ellegren H

The Relationship Between Microsatellite Polymorphism and Recombination Hot Spots in the Human Genome

MOLECULAR BIOLOGY AND EVOLUTION. 2008 DEC; 25 (12): 2579-2587

719

6808 Morozova O, Hirst M, Marra MA

Applications of New Sequencing Technologies for Transcriptome Analysis

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2009; 10: 135-151

103

720

6881 Dong C, Poulter RT, Han JS

LINE-Like Retrotransposition in Saccharomyces cerevisiae

GENETICS. 2009 JAN; 181 (1): 301-311

Date / Author / Journal

LCS

GCS

LCR

721

7012 van Hooff SR, Koster J, Hulsen T, van Schaik BDC, Roos M, et al.

The Construction of Genome-Based Transcriptional Units

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY. 2009 APR; 13 (2): 105-114

722

7141 Seidl MF, Schultz J

Evolutionary flexibility of protein complexes

BMC EVOLUTIONARY BIOLOGY. 2009 JUL 7; 9: Art. No. 155

723

7145 Bozdag S, Close TJ, Lonardi S

A compartmentalized approach to the assembly of physical maps

BMC BIOINFORMATICS. 2009 JUL 15; 10: Art. No. 217

724

7157 Ponting CP, Goodstadt L

Separating derived from ancestral features of mouse and human genomes

BIOCHEMICAL SOCIETY TRANSACTIONS. 2009 AUG; 37: 734-739

725

7165 Gimenez J, Montgiraud C, Oriol G, Pichon JP, Ruel K, et al.

Comparative Methylation of ERVWE1/Syncytin-1 and Other Human Endogenous Retrovirus LTRs in Placenta Tissues

DNA RESEARCH. 2009 AUG; 16 (4): 195-211

726

7213 Salzburger W, Steinke D, Braasch I, Meyer A

Genome Desertification in Eutherians: Can Gene Deserts Explain the Uneven Distribution of Genes in Placental Mammalian Genomes?

JOURNAL OF MOLECULAR EVOLUTION. 2009 SEP; 69 (3): 207-216

727

7222 Balada E, Ordi-Ros J, Vilardell-Tarres M

Molecular mechanisms mediated by Human Endogenous Retroviruses (HERVs) in autoimmunity

REVIEWS IN MEDICAL VIROLOGY. 2009 SEP; 19 (5): 273-286

103

728

7274 Zhang W, Dolan ME

Use of Cell Lines in the Investigation of Pharmacogenetic Loci

CURRENT PHARMACEUTICAL DESIGN. 2009 NOV; 15 (32): 3782-3795

147

729

7336 St Laurent G, Savva YA, Reenan R

Enhancing non-coding RNA information content with ADAR editing

NEUROSCIENCE LETTERS. 2009 DEC 4; 466 (2): 89-98

730

969 Copley RR, Letunic I, Bork P

Genome and protein evolution in eukaryotes

CURRENT OPINION IN CHEMICAL BIOLOGY. 2002 FEB; 6 (1): 39-45

Date / Author / Journal

LCS

GCS

LCR

731

1339 Leo CP, Hsu SY, Hsueh AJW

Hormonal genomics

ENDOCRINE REVIEWS. 2002 JUN; 23 (3): 369-381

159

732

1473 Yao T

Bioinformatics for the genomic sciences and towards systems biology. Japanese activities in the post-genome era

PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY. 2002 JUL-AUG; 80 (1-2): 23-42

733

1924 Bentley DR

DNA sequence variation of Homo sapiens

COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY. 2003; 68: 55-63

734

2067 Couronne O, Poliakov A, Bray N, Ishkhanov T, Ryaboy D, et al.

Strategies and tools for whole-genome alignments

GENOME RESEARCH. 2003 JAN; 13 (1): 73-80

113

735

2158 Bashyam MD, Hasnain SE

The human genome sequence: impact on health care

INDIAN JOURNAL OF MEDICAL RESEARCH. 2003 FEB; 117: 43-65

736

2244 Woodage T, Broder S

The human genome and comparative genomics: understanding human evolution, biology, and medicine

JOURNAL OF GASTROENTEROLOGY. 2003 MAR; 38: 68-77

737

2379 Dobrin SE, Stephan DA

Integrating microarrays into disease-gene identification strategies

EXPERT REVIEW OF MOLECULAR DIAGNOSTICS. 2003 MAY; 3 (3): 375-385

738

2497 Strausberg RL, Simpson AJG, Wooster R

Sequence-based cancer genomics: Progress, lessons and opportunities

NATURE REVIEWS GENETICS. 2003 JUN; 4 (6): 409-418

739

2499 Holste D, Grosse I, Beirer S, Schieg P, Herzel H

Repeats and correlations in human DNA sequences

PHYSICAL REVIEW E. 2003 JUN; 67 (6): Art. No. 061913

740

2517 Casacuberta JM, Santiago N

Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes

GENE. 2003 JUN 5; 311: 1-11

104

Date / Author / Journal

741

Insights from human/mouse genome comparisons

MAMMALIAN GENOME. 2003 JUL; 14 (7): 429-436

742

2589 Halees AS, Leyfer D, Weng ZP

PromoSer: a large-scale mammalian promoter and transcription start site identification service

NUCLEIC ACIDS RESEARCH. 2003 JUL 1; 31 (13): 3554-3559

743

2713 Engler FW, Hatfield J, Nelson W, Soderlund CA

Locating sequence on FPC maps and selecting a minimal tiling path

GENOME RESEARCH. 2003 SEP; 13 (9): 2152-2163

744

2767 Bailey JA, Liu G, Eichler EE

An Alu transposition model for the origin and expansion of human segmental duplications

AMERICAN JOURNAL OF HUMAN GENETICS. 2003 OCT; 73 (4): 823-834

159

745

2802 Chanock S

Genetic variation and hematology: Single-nucleotide polymorphisms, haplotypes, and complex disease

SEMINARS IN HEMATOLOGY. 2003 OCT; 40 (4): 321-328

746

2886 Schulze TG, McMahon FJ

Genetic linkage and association studies in bipolar affective disorder: A time for optimism

AMERICAN JOURNAL OF MEDICAL GENETICS PART C-SEMINARS IN MEDICAL GENETICS. 2003 NOV 15; 123C (1): 36-47

115

747

2904 Ostertag EM, Goodier JL, Zhang Y, Kazazian HH

SVA elements are nonautonomous retrotransposons that cause disease in humans

AMERICAN JOURNAL OF HUMAN GENETICS. 2003 DEC; 73 (6): 1444-1451

748

2923 Babcock M, Pavlicek A, Spiteri E, Kashork CD, Ioshikhes I, et al.

Shuffling of genes within low-copy repeats on 22qll (LCR22) by Alu-mediated recombination events during evolution

GENOME RESEARCH. 2003 DEC; 13 (12): 2519-2532

749

2925 Torrents D, Suyama M, Zdobnov E, Bork P

A genome-wide survey of human pseudogenes

GENOME RESEARCH. 2003 DEC; 13 (12): 2559-2567

750

3030 Galtier N, Bonhomme F, Moulia C, Belkhir K, Caminade P, et al.

Mouse biodiversity in the genomic era

CYTOGENETIC AND GENOME RESEARCH. 2004; 105 (2-4): 385-394

139

Date / Author / Journal

LCS

GCS

LCR

751

3054 Lee C, Roy M

Analysis of alternative splicing with microarrays: successes and challenges

GENOME BIOLOGY. 2004; 5 (7): Art. No. 231

752

3072 Zheng ZM

Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression

JOURNAL OF BIOMEDICAL SCIENCE. 2004; 11 (3): 278-294

184

753

3136 Hsiang T, Baillie DL

Recent progress, developments, and issues in comparative fungal genomics

CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE. 2004 JAN-MAR; 26 (1): 19-30

113

754

3218 Emerson JJ, Kaessmann H, Betran E, Long MY

Extensive gene traffic on the mammalian X chromosome

SCIENCE. 2004 JAN 23; 303 (5657): 537-540

128

755

3442 Nachman MW, D'Agostino SL, Tillquist CR, Mobasher Z, Hammer MF

Nucleotide variation at Msn and Alas2, two genes flanking the centromere of the X chromosome in humans

GENETICS. 2004 MAY; 167 (1): 423-437

756

3546 Meunier J, Duret L

Recombination drives the evolution of GC-content in the human genome

MOLECULAR BIOLOGY AND EVOLUTION. 2004 JUN; 21 (6): 984-990

108

757

3600 Comeron JM

Selective and mutational patterns associated with gene expression in humans: Influences on synonymous composition and intron presence

GENETICS. 2004 JUL; 167 (3): 1293-1304

758

3643 Savage SA, Chanock SJ

Using germ-line genetic variation to investigate and treat cancer

DRUG DISCOVERY TODAY. 2004 JUL 15; 9 (14): 610-618

759

3679 Zhang R, Zhang CT

Isochore structures in the genome of the plant Arabidopsis thaliana

JOURNAL OF MOLECULAR EVOLUTION. 2004 AUG; 59 (2): 227-238

760

3703 Wei CL, Ng P, Chiu KP, Wong CH, Ang CC, et al.

5 ' Long serial analysis of gene expression (LongSAGE) and 3 ' LongSAGE for transcriptome characterization and genome annotation

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 AUG 10; 101 (32): 11701-11706

Date / Author / Journal

LCS

GCS

LCR

761

3761 Schmutz J, Martin J, Terry A, Couronne O, Grimwood J, et al.

The DNA sequence and comparative analysis of human chromosome 5

NATURE. 2004 SEP 16; 431 (7006): 268-274

762

3866 Jordan IK, Marino-Ramirez L, Wolf YI, Koonin EV

Conservation and coevolution in the scale-free human gene coexpression network

MOLECULAR BIOLOGY AND EVOLUTION. 2004 NOV; 21 (11): 2058-2070

763

3880 Yeo G, Hoon S, Venkatesh B, Burge CB

Variation in sequence and organization of splicing regulatory elements in vertebrate genes

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 NOV 2; 101 (44): 15700-15705

764

3915 Dike S, Balija VS, Nascimento LU, Xuan ZY, Ou J, et al.

The mouse genome: Experimental examination of gene predictions and transcriptional start sites

GENOME RESEARCH. 2004 DEC; 14 (12): 2424-2429

765

4034 de Parseval N, Heidmann T

Human endogenous retroviruses: from infectious elements to human genes

CYTOGENETIC AND GENOME RESEARCH. 2005; 110 (1-4): 318-332

766

4062 Yeo GWM

Splicing regulators: targets and drugs

GENOME BIOLOGY. 2005; 6 (12): Art. No. 240

767

4219 Keightley PD, Lercher MJ, Eyre-Walker A

Evidence for widespread degradation of gene control regions in hominid genomes

PLOS BIOLOGY. 2005 FEB; 3 (2): Art. No. e42

768

4233 Vogel C, Teichmann SA, Pereira-Leal J

The relationship between domain duplication and recombination

JOURNAL OF MOLECULAR BIOLOGY. 2005 FEB 11; 346 (1): 355-365

769

4275 Fryxell KJ, Moon WJ

CpG mutation rates in the human genome are highly dependent on local GC content

MOLECULAR BIOLOGY AND EVOLUTION. 2005 MAR; 22 (3): 650-658

770

4346 Dunn CA, Mager DL

Transcription of the human and rodent SPAM1/PH-20 genes initiates within an ancient endogenous retrovirus

BMC GENOMICS. 2005 APR 1; 6: Art. No. 47

Date / Author / Journal

LCS

GCS

LCR

771

4406 Eyras E, Reymond A, Castelo R, Bye JM, Camara F, et al.

Gene finding in the chicken genome

BMC BIOINFORMATICS. 2005 MAY 30; 6: Art. No. 131

772

4543 Jun Y, Oiang BQ, Zhu C, Yang HM, Chinese Human Genome Consortium

"Beijing Region" (3pter-D3S3397) of the Human Genome: Complete sequence and analysis

SCIENCE IN CHINA SERIES C-LIFE SCIENCES. 2005 AUG; 48 (4): 311-329

773

4571 Antonell A, de Luis O, Domingo-Roura X, Perez-Jurado LA

Evolutionary mechanisms shaping the genomic structure of the Williams-Beuren syndrome chromosomal region at human 7q11.23

GENOME RESEARCH. 2005 SEP; 15 (9): 1179-1188

774

4713 Kulpa DA, Moran JV

Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition

HUMAN MOLECULAR GENETICS. 2005 NOV 1; 14 (21): 3237-3248

775

4766 Zheng CL, Kwon YS, Li HR, Zhang K, Coutinho-Mansfield G, et al.

MAASE: An alternative splicing database designed for supporting splicing microarray applications

RNA-A PUBLICATION OF THE RNA SOCIETY. 2005 DEC; 11 (12): 1767-1776

776

4820 Scott LA, Kuroiwa A, Matsuda Y, Wichman HA

X accumulation of LINE-1 retrotransposons in Tokudaia osimensis, a spiny rat with the karyotype XO

CYTOGENETIC AND GENOME RESEARCH. 2006; 112 (3-4): 261-269

777

4855 Matsutani S

Links between repeated sequences

JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY. 2006; : Art. No. 13569

778

4879 Pichon JP, Bonnaud B, Cleuziat P, Mallet F

Multiplex degenerate PCR coupled with an oligo sorbent array for human endogenous retrovirus expression profiling

NUCLEIC ACIDS RESEARCH. 2006; 34 (6): Art. No. e46

779

4917 Luo MZ, Yu YS, Kim HR, Kudrna D, Itoh Y, et al.

Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region

GENOMICS. 2006 JAN; 87 (1): 181-190

780

4950 Thornburg BG, Gotea V, Makalowski W

Transposable elements as a significant source of transcription regulating signals

GENE. 2006 JAN 3; 365: 104-110

Date / Author / Journal

LCS

GCS

LCR

781

4955 Alisch RS, Garcia-Perez JL, Muotri AR, Gage FH, Moran JV

Unconventional translation of mammalian LINE-1 retrotransposons

GENES & DEVELOPMENT. 2006 JAN 15; 20 (2): 210-224

782

4960 Teber ET, Crawford E, Bolton KB, Van Dyk D, Schofield PR, et al.

Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration

BMC BIOINFORMATICS. 2006 JAN 23; 7: Art. No. 33

783

5005 Dunn CA, Romanish MT, Gutierrez LE, van de Lagemaat LN, Mager DL

Transcription of two human genes from a bidirectional endogenous retrovirus promoter

GENE. 2006 FEB 1; 366 (2): 335-342

784

5084 Vij S, Gupta V, Kumar D, Vydianathan R, Raghuvanshi S, et al.

Decoding the rice genome

BIOESSAYS. 2006 APR; 28 (4): 421-432

101

785

5186 Comeron JM

Weak selection and recent mutational changes influence polymorphic synonymous mutations in humans

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2006 MAY 2; 103 (18): 6940-6945

786

5329 MacNeil A, Sankale JL, Meloni ST, Sarr AD, Mboup S, et al.

Genomic sites of human immunodeficiency virus type 2 (HIV-2) integration: Similarities to HIV-1 in vitro and possible differences in vivo

JOURNAL OF VIROLOGY. 2006 AUG; 80 (15): 7316-7321

787

5351 Smith JJ, Voss SR

Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution

BMC GENOMICS. 2006 AUG 29; 7: Art. No. 219

788

5379 Spencer CCA, Deloukas P, Hunt S, Mullikin J, Myers S, et al.

The influence of recombination on human genetic diversity

PLOS GENETICS. 2006 SEP; 2 (9): Art. No. e148

789

5415 Le Rouzic A, Capy P

Population genetics models of competition between transposable element subfamilies

GENETICS. 2006 OCT; 174 (2): 785-793

790

5426 Nomura Y, Kajikawa M, Baba S, Nakazato S, Imai T, et al.

Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2

NUCLEIC ACIDS RESEARCH. 2006 OCT; 34 (18): 5184-5193

Date / Author / Journal

LCS

GCS

LCR

791

5489 Zhou Q, Huang L, Zhang JG, Zhao XY, Zhang QP, et al.

Comparative genomic analysis links karyotypic evolution with genomic evolution in the Indian Muntjac (Muntiacus muntjak vaginalis)

CHROMOSOMA. 2006 DEC; 115 (6): 427-436

792

5564 Reddy ASN

Alternative splicing of pre-messenger RNAs in plants in the genomic era

ANNUAL REVIEW OF PLANT BIOLOGY. 2007; 58: 267-294

138

793

5581 Wang Y, Fong PY, Leung FCC, Mak W, Sham PC

Increased gene coverage and Alu frequency in large linkage disequilibrium blocks of the human genome

GENETICS AND MOLECULAR RESEARCH. 2007; 6 (4): 1131-1141

794

5640 Sasaki T, Shimizu A, Ishikawa SK, Imai S, Asakawa S, et al.

The DNA sequence of medaka chromosome LG22

GENOMICS. 2007 JAN; 89 (1): 124-133

795

5653 Kaiser VB, van Tuinen M, Ellegren H

Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds

MOLECULAR BIOLOGY AND EVOLUTION. 2007 JAN; 24 (1): 338-347

796

5663 Kim E, Magen A, Ast G

Different levels of alternative splicing among eukaryotes

NUCLEIC ACIDS RESEARCH. 2007 JAN; 35 (1): 125-131

797

5673 Feng WJN, Liu JS, Rycaj K, Huang M, Tsai K, et al.

Expression of multiple human endogenous retrovirus surface envelope proteins in ovarian cancer

INTERNATIONAL JOURNAL OF CANCER. 2007 JAN 1; 120 (1): 81-90

798

5674 Premzl M, Gamulin V

Comparative genomic analysis of prion genes

BMC GENOMICS. 2007 JAN 2; 8: Art. No. 1

799

5707 Hoffman MM, Birney E

Estimating the neutral rate of nucleotide substitution using introns

MOLECULAR BIOLOGY AND EVOLUTION. 2007 FEB; 24 (2): 522-531

800

5712 Visel A, Bristow J, Pennacchio LA

Enhancer identification through comparative genomics

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY. 2007 FEB; 18 (1): 140-152

Initial sequencing and analysis of the human genome (Lander) The papers citing Lander ES, et al. "Initial sequencing and analysis of the human genome." NATURE. 2001 FEB 15; 409 (6822): 860-921	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 38623, GCS 253809, CR 422506 Collection span: 2000 - 2010
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