HistCite - Initial sequencing and analysis of the human genome (Lander)

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#	Date / Author / Journal	LCS	GCS	LCR	CR
401	3369 Jensen-Seaman MI, Furey TS, Payseur BA, Lu YT, Roskin KM, et al. Comparative recombination rates in the rat, mouse, and human genomes GENOME RESEARCH. 2004 APR; 14 (4): 528-538	23	88	15	70
402	3414 Dunham A, Matthews LH, Burton J, Ashurst JL, Howe KL, et al. The DNA sequence and analysis of human chromosome 13 NATURE. 2004 APR 1; 428 (6982): 522-528	12	29	15	50
403	3507 Deloukas P, Earthrowl ME, Grafham DV, Rubenfield M, French L, et al. The DNA sequence and comparative analysis of human chromosome 10 NATURE. 2004 MAY 27; 429 (6990): 375-381	9	17	15	41
404	3530 Hedges DJ, Callinan PA, Cordaux R, Xing J, Barnes E, et al. Differential Alu mobilization and polymorphism among the human and chimpanzee lineages GENOME RESEARCH. 2004 JUN; 14 (6): 1068-1075	37	53	15	51
405	3609 Castresana J, Guigo R, Alba MM Clustering of genes coding for DNA binding proteins in a region of atypical evolution of the human genome JOURNAL OF MOLECULAR EVOLUTION. 2004 JUL; 59 (1): 72-79	0	5	15	43
406	3649 Schulz HL, Goetz T, Kaschkoetoe J, Weber BHF The retinome - Defining a reference transcriptome of the adult mammalian retina/retinal pigment epithelium BMC GENOMICS. 2004 JUL 29; 5: Art. No. 50	2	13	15	57
407	3827 Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype NATURE. 2004 OCT 21; 431 (7011): 946-957	53	521	15	57
408	4059 Aloni R, Lancet D Conservation anchors in the vertebrate genome GENOME BIOLOGY. 2005; 6 (7): Art. No. 115	0	3	15	39
409	4212 Ng P, Wei CL, Sung WK, Chiu KP, Lipovich L, et al. Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation NATURE METHODS. 2005 FEB; 2 (2): 105-111	11	93	15	30
410	4399 Callinan PA, Wang JX, Herke SW, Garber RK, Liang P, et al. Alu retrotransposition-mediated deletion JOURNAL OF MOLECULAR BIOLOGY. 2005 MAY 13; 348 (4): 791-800	26	38	15	39
#	Date / Author / Journal	LCS	GCS	LCR	CR
411	4402 Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution SCIENCE. 2005 MAY 20; 308 (5725): 1149-1154	58	346	15	35
412	4470 Pozzoli U, Sironi M Silencers regulate both constitutive and alternative splicing events in mammals CELLULAR AND MOLECULAR LIFE SCIENCES. 2005 JUL; 62 (14): 1579-1604	3	28	15	184
413	4573 Wang W, Zheng HK, Yang S, Yu HJ, Li J, et al. Origin and evolution of new exons in rodents GENOME RESEARCH. 2005 SEP; 15 (9): 1258-1264	13	42	15	40
414	4662 Panopoulou G, Poustka AJ Timing and mechanism of ancient vertebrate genome duplications - the adventure of a hypothesis TRENDS IN GENETICS. 2005 OCT; 21 (10): 559-567	2	65	15	82
415	4746 Wang W, Kirkness EF Short interspersed elements (SINEs) are a major source of canine genomic diversity GENOME RESEARCH. 2005 DEC; 15 (12): 1798-1808	10	23	15	52
416	4789 Bourque G, Zhang LX Models and methods in comparative genomics ADVANCES IN COMPUTERS , VOL 68. 2006; 68: 59-104	0	1	15	172
417	4916 Khan H, Smit A, Boissinot S Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates GENOME RESEARCH. 2006 JAN; 16 (1): 78-87	30	44	15	72
418	4992 Kuroki Y, Toyoda A, Noguchi H, Taylor TD, Itoh T, et al. Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway NATURE GENETICS. 2006 FEB; 38 (2): 158-+	5	40	15	52
419	5042 Wang XX, Grus WE, Zhang JZ Gene losses during human origins PLOS BIOLOGY. 2006 MAR; 4 (3): Art. No. e52	0	62	15	79
420	5065 Kovalskaya E, Buzdin A, Gogvadze E, Vinogradova T, Sverdlov E Functional human endogenous retroviral LTR transcription start sites are located between the R and U5 regions VIROLOGY. 2006 MAR 15; 346 (2): 373-378	5	9	15	42
#	Date / Author / Journal	LCS	GCS	LCR	CR
421	5128 Feuk L, Marshall CR, Wintle RF, Scherer SW Structural variants: changing the landscape of chromosomes and design of disease studies HUMAN MOLECULAR GENETICS. 2006 APR 15; 15: R57-R66	10	66	15	127
422	5197 Cordaux R, Hedges DJ, Herke SW, Batzer MA Estimating the retrotransposition rate of human Alu elements GENE. 2006 MAY 24; 373: 134-137	13	19	15	37
423	5283 Nishihara H, Smit AFA, Okada N Functional noncoding sequences derived from SINEs in the mammalian genome GENOME RESEARCH. 2006 JUL; 16 (7): 864-874	35	62	15	56
424	5408 Ivics Z, Izsvak Z Transposons for gene therapy! CURRENT GENE THERAPY. 2006 OCT; 6 (5): 593-607	1	29	15	166
425	5512 Khaja R, Zhang JJ, MacDonald JR, He YS, Joseph-George AM, et al. Genome assembly comparison identifies structural variants in the human genome NATURE GENETICS. 2006 DEC; 38 (12): 1413-1418	15	73	15	30
426	5552 Lareau LF, Brooks AN, Soergel DAW, Meng Q, Brenner SE The coupling of alternative splicing and nonsense-mediated mRNA decay ALTERNATIVE SPLICING IN THE POSTGENOMIC ERA. 2007; 623: 190-211	2	13	15	109
427	5565 Tellam RL Capturing benefits from the bovine genome sequence AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE. 2007; 47 (9): 1039-1050	0	4	15	85
428	5575 Schmegner C, Hameister H, Vogel W, Assum G Isochores and replication time zones: a perfect match CYTOGENETIC AND GENOME RESEARCH. 2007; 116 (3): 167-172	1	10	15	45
429	5619 Arneodo A, Audit B, Brodie EBBO, Nicolay S, St Jean P, et al. DNA IN CHROMATIN: FROM GENOME-WIDE SEQUENCE ANALYSIS TO THE MODELING OF REPLICATION IN MAMMALS SPECIAL VOLUME IN MEMORY OF ILYA PRIGOGINE. 2007; 135: 203-252	0	0	15	161
430	5819 Hulme AE, Bogerd HP, Cullen BR, Moran JV Selective inhibition of Alu retrotransposition by APOBEC3G GENE. 2007 APR 1; 390 (1-2): 199-205	11	38	15	52
#	Date / Author / Journal	LCS	GCS	LCR	CR
431	5833 Schioth HB, Nordstrom KJV, Fredriksson R Mining the gene repertoire and ESTs for G protein-coupled receptors with evolutionary perspective ACTA PHYSIOLOGICA. 2007 MAY; 190 (1): 21-31	1	5	15	59
432	5961 Styles P, Brookfield JFY Analysis of the features and source gene composition of the AluYg6 subfamily of human retrotransposons BMC EVOLUTIONARY BIOLOGY. 2007 JUL 1; 7: Art. No. 102	0	0	15	25
433	5968 Lerat E, Semon M Influence of the transposable element neighborhood on human gene expression in normal and tumor tissues GENE. 2007 JUL 15; 396 (2): 303-311	0	2	15	55
434	6033 Jiang CZ, Han L, Su B, Li WH, Zhao ZM Features and trend of loss of promoter-associated CpG islands in the human and mouse genomes MOLECULAR BIOLOGY AND EVOLUTION. 2007 SEP; 24 (9): 1991-2000	3	10	15	51
435	6074 Fiston-Lavier AS, Anxolabehere D, Quesneville H A model of segmental duplication formation in Drosophila melanogaster GENOME RESEARCH. 2007 OCT; 17 (10): 1458-1470	3	10	15	61
436	6105 Kleino I, Ortiz RM, Huovila APJ ADAM15 gene structure and differential alternative exon use in human tissues BMC MOLECULAR BIOLOGY. 2007 OCT 15; 8: Art. No. 90	0	3	15	107
437	6197 Yang W, Li QZ Prediction of alternative 5 '/3 ' splice sites in the human genome BMEI 2008: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOMEDICAL ENGINEERING AND INFORMATICS, VOL 1. 2008; : 143-147	0	0	15	34
438	6458 Dalkilic MM, Costello JC, Clark WT, Radivojac P From protein-disease associations to disease informatics FRONTIERS IN BIOSCIENCE. 2008 MAY; 13: 3391-3407	0	3	15	184
439	6542 Tadepally HD, Burger G, Aubry M Evolution of C2H2-zinc finger genes and subfamilies in mammals: Species-specific duplication and loss of clusters, genes and effector domains BMC EVOLUTIONARY BIOLOGY. 2008 JUN 18; 8: Art. No. 176	0	5	15	56
440	6562 Louro R, El-Jundi T, Nakaya HI, Reis EM, Verjovski-Almeida S Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci GENOMICS. 2008 JUL; 92 (1): 18-25	0	3	15	46
#	Date / Author / Journal	LCS	GCS	LCR	CR
441	6791 Cordaux R The human genome in the LINE of fire PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 DEC 9; 105 (49): 19033-19034	1	1	15	21
442	6862 Tazi J, Bakkour N, Stamm S Alternative splicing and disease BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE. 2009 JAN; 1792 (1): 14-26	0	8	15	188
443	6913 Khazina E, Weichenrieder O Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2009 JAN 20; 106 (3): 731-736	0	2	15	54
444	6918 Freudenberg J, Wang MY, Yang YN, Li WT Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome BMC BIOINFORMATICS. 2009 JAN 30; 10: Art. No. S66	0	0	15	42
445	6933 Chen CJ, Ara T, Gautheret D Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation MOLECULAR BIOLOGY AND EVOLUTION. 2009 FEB; 26 (2): 327-334	3	3	15	33
446	7080 Aravind L, Anantharaman V, Venancio TM Apprehending Multicellularity: Regulatory Networks, Genomics, and Evolution BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS. 2009 JUN; 87 (2): 143-164	0	1	15	203
447	7104 Li XY, Slife J, Patel N, Zhao SY Stepwise evolution of two giant composite LTR-retrotransposon-like elements DA and Xiao BMC EVOLUTIONARY BIOLOGY. 2009 JUN 5; 9: Art. No. 128	0	0	15	23
448	7127 Marchani EE, Xing JC, Witherspoon DJ, Jorde LB, Rogers AR Estimating the age of retrotransposon subfamilies using maximum likelihood GENOMICS. 2009 JUL; 94 (1): 78-82	0	0	15	33
449	7179 Melamud E, Moult J Structural implication of splicing stochastics NUCLEIC ACIDS RESEARCH. 2009 AUG; 37 (14): 4862-4872	0	0	15	55
450	7180 Melamud E, Moult J Stochastic noise in splicing machinery NUCLEIC ACIDS RESEARCH. 2009 AUG; 37 (14): 4873-4886	1	1	15	54
#	Date / Author / Journal	LCS	GCS	LCR	CR
451	7211 Pritham EJ Transposable Elements and Factors Influencing their Success in Eukaryotes JOURNAL OF HEREDITY. 2009 SEP-OCT; 100 (5): 648-655	0	0	15	68
452	7323 Cruickshanks HA, Tufarelli C Isolation of cancer-specific chimeric transcripts induced by hypomethylation of the LINE-1 antisense promoter GENOMICS. 2009 DEC; 94 (6): 397-406	0	0	15	43
453	7326 Luchetti A, Mantovani B Talua SINE Biology in the Genome of the Reticulitermes Subterranean Termites (Isoptera, Rhinotermitidae) JOURNAL OF MOLECULAR EVOLUTION. 2009 DEC; 69 (6): 589-600	0	0	15	49
454	1493 Maniatis T, Tasic B Alternative pre-mRNA splicing and proteome expansion in metazoans NATURE. 2002 JUL 11; 418 (6894): 236-243	62	349	14	96
455	2284 Barr MM Super models PHYSIOLOGICAL GENOMICS. 2003 MAR 18; 13 (1): 15-24	1	34	14	107
456	2372 Stankiewicz P, Shaw CJ, Dapper JD, Wakui K, Shaffer LG, et al. Genome architecture catalyzes nonrecurrent chromosomal rearrangements AMERICAN JOURNAL OF HUMAN GENETICS. 2003 MAY; 72 (5): 1101-1116	12	90	14	66
457	2440 Thanaraj TA, Clark F, Muilu J Conservation of human alternative splice events in mouse NUCLEIC ACIDS RESEARCH. 2003 MAY 15; 31 (10): 2544-2552	27	76	14	35
458	2596 Hillier LW, Fulton RS, Fulton LA, Graves TA, Pepin KH, et al. The DNA sequence of human chromosome 7 NATURE. 2003 JUL 10; 424 (6945): 157-U2	38	85	14	49
459	2729 Horvath JE, Gulden CL, Bailey JA, Yohn C, Mcpherson JD, et al. Using a pericentromeric interspersed repeat to recapitulate the phylogeny and expansion of human centromeric segmental duplications MOLECULAR BIOLOGY AND EVOLUTION. 2003 SEP; 20 (9): 1463-1479	10	17	14	58
460	2995 de Hoog CL, Mann M Proteomics ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2004; 5: 267-293	8	99	14	122
#	Date / Author / Journal	LCS	GCS	LCR	CR
461	3179 Ruan YJ, Le Ber P, Ng HH, Liu ET Interrogating the transcriptome TRENDS IN BIOTECHNOLOGY. 2004 JAN; 22 (1): 23-30	5	28	14	67
462	3368 Yang S, Smit AF, Schwartz S, Chiaromonte F, Roskin KM, et al. Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes GENOME RESEARCH. 2004 APR; 14 (4): 517-527	19	29	14	45
463	3508 Watanabe H, Fujiyama A, Hattori M, Taylor TD, Toyoda A, et al. DNA sequence and comparative analysis of chimpanzee chromosome 22 NATURE. 2004 MAY 27; 429 (6990): 382-388	34	113	14	46
464	3721 Li WT, Holste D Spectral analysis of guanine and cytosine fluctuations of mouse genomic DNA FLUCTUATION AND NOISE LETTERS. 2004 SEP; 4 (3): L453-L464	2	4	14	75
465	3725 Suzuki Y, Yamashita R, Shirota M, Sakakibara Y, Chiba J, et al. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions GENOME RESEARCH. 2004 SEP; 14 (9): 1711-1718	2	22	14	41
466	3808 Antonarakis SE, Lyle R, Dermitzakis ET, Reymond A, Deutsch S Chromosome 21 and Down syndrome: From genomics to pathophysiology NATURE REVIEWS GENETICS. 2004 OCT; 5 (10): 725-738	2	76	14	99
467	3815 Bannert N, Kurth R Retroelements and the human genome: New perspectives on an old relation PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 OCT 5; 101: 14572-14579	47	105	14	107
468	3857 Macfarlane C, Simmonds P Allelic variation of HERV-K(HML-2) endogenous retroviral elements in human populations JOURNAL OF MOLECULAR EVOLUTION. 2004 NOV; 59 (5): 642-656	13	28	14	62
469	3997 Dalrymple BP Harnessing the bovine genome sequence for the Australian cattle and sheep industries AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE. 2005; 45 (7-8): 1011-1016	1	2	14	33
470	4086 Zdobnov EM, Campillos M, Harrington ED, Torrents D, Bork P Protein coding potential of retroviruses and other transposable elements in vertebrate genomes NUCLEIC ACIDS RESEARCH. 2005; 33 (3): 946-954	10	14	14	45
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471	4092 Perreault J, Noel JF, Briere F, Cousineau B, Lucier JF, et al. Retropseudogenes derived from the human Ro/SS-A autoantigen-associated hY RNAs NUCLEIC ACIDS RESEARCH. 2005; 33 (6): 2032-2041	3	11	14	48
472	4110 Valente L, Nishikura K ADAR gene family and A-to-I RNA editing: Diverse roles in Posttranscriptional gene regulation PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 79. 2005; 79: 299-338	8	48	14	187
473	4140 Ovcharenko I, Loots GG, Nobrega MA, Hardison RC, Miller W, et al. Evolution and functional classification of vertebrate gene deserts GENOME RESEARCH. 2005 JAN; 15 (1): 137-145	19	78	14	34
474	4141 Kellner WA, Sullivan RT, Carlson BH, Thomas JW, NISC Comp Sequ Prog Uprobe: A genome-wide universal probe resource for comparative physical mapping in vertebrates GENOME RESEARCH. 2005 JAN; 15 (1): 166-173	4	15	14	44
475	4149 Andersen JN, Del Vecchio RL, Kannan N, Gergel J, Neuwald AF, et al. Computational analysis of protein tyrosine phosphatases: practical guide to bioinformatics and data resources METHODS. 2005 JAN; 35 (1): 90-114	1	8	14	97
476	4182 Shapiro JA A 21st century view of evolution: genome system architecture, repetitive DNA, and natural genetic engineering GENE. 2005 JAN 17; 345 (1): 91-100	3	22	14	93
477	4201 Milosavljevic A, Harris RA, Sodergren EJ, Jackson AR, Kalafus KJ, et al. Pooled genomic indexing of rhesus macaque GENOME RESEARCH. 2005 FEB; 15 (2): 292-301	2	5	14	35
478	4239 Washietl S, Hofacker IL, Stadler PF Fast and reliable prediction of noncoding RNAs PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 FEB 15; 102 (7): 2454-2459	4	200	14	47
479	4266 Belle EMS, Webster MT, Eyre-Walker A Why are young and old repetitive elements distributed differently in the human genome? JOURNAL OF MOLECULAR EVOLUTION. 2005 MAR; 60 (3): 290-296	4	5	14	29
480	4278 Reis EM, Louro R, Nakaya HI, Verjovski-Almeida S As antisense RNA gets intronic OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY. 2005 MAR; 9 (1): 2-12	2	18	14	60
#	Date / Author / Journal	LCS	GCS	LCR	CR
481	4299 Zheng XH, Lu F, Wang ZY, Hoover J, Mural R Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs BIOINFORMATICS. 2005 MAR 15; 21 (6): 703-710	2	16	14	36
482	4342 Ellegren H The avian genome uncovered TRENDS IN ECOLOGY & EVOLUTION. 2005 APR; 20 (4): 180-186	2	27	14	68
483	4371 Han KD, Xing J, Wang H, Hedges DJ, Garber RK, et al. Under the genomic radar: The Stealth model of Alu amplification GENOME RESEARCH. 2005 MAY; 15 (5): 655-664	14	17	14	52
484	4388 Han K, Yeo G, An P, Burge CB, Grabowski PJ A combinatorial code for splicing silencing: UAGG and GGGG motifs PLOS BIOLOGY. 2005 MAY; 3 (5): Art. No. e158	0	64	14	82
485	4415 Andersson JO Lateral gene transfer in eukaryotes CELLULAR AND MOLECULAR LIFE SCIENCES. 2005 JUN; 62 (11): 1182-1197	7	95	14	115
486	4469 Gel'fand MS The apology of bioinformatics BIOFIZIKA. 2005 JUL-AUG; 50 (4): 752-766	0	0	14	147
487	4631 Newman TL, Tuzun E, Morrison VA, Hayden KE, Ventura M, et al. A genome-wide survey of structural variation between human and chimpanzee GENOME RESEARCH. 2005 OCT; 15 (10): 1344-1356	17	72	14	59
488	4648 Gentles AJ, Kohany O, Jurka J Evolutionary diversity and potential recombinogenic role of integration targets of non-LTR retrotransposons MOLECULAR BIOLOGY AND EVOLUTION. 2005 OCT; 22 (10): 1983-1991	8	10	14	48
489	4888 Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, et al. Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs NUCLEIC ACIDS RESEARCH. 2006; 34 (14): 3917-3928	4	19	14	44
490	4912 Sinibaldi-Vallebona P, Lavia P, Garaci E, Spadafora C A role for endogenous reverse transcriptase in tumorigenesis and as a target in differentiating cancer therapy GENES CHROMOSOMES & CANCER. 2006 JAN; 45 (1): 1-10	7	19	14	83
#	Date / Author / Journal	LCS	GCS	LCR	CR
491	4993 Feuk L, Carson AR, Scherer SW Structural variation in the human genome NATURE REVIEWS GENETICS. 2006 FEB; 7 (2): 85-97	34	323	14	113
492	5044 Glusman G, Qin SZ, El-Gewely R, Siegel AF, Roach JC, et al. A third approach to gene prediction suggests thousands of additional human transcribed regions PLOS COMPUTATIONAL BIOLOGY. 2006 MAR; 2 (3): Art. No. e18	0	14	14	45
493	5114 Hayashizaki Y, Carninci P Genome network and FANTOM3: Assessing the complexity of the transcriptome PLOS GENETICS. 2006 APR; 2 (4): Art. No. e63	0	14	14	47
494	5132 Chakravarti R, Adams JC Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates BMC GENOMICS. 2006 APR 18; 7: Art. No. 83	0	15	14	110
495	5221 Thill G, Castelli V, Pallud S, Salanoubat M, Wincker P, et al. ASEtrap: A biological method for speeding up the exploration of spliceomes GENOME RESEARCH. 2006 JUN; 16 (6): 776-786	0	10	14	42
496	5241 Lagerstrom MC, Hellstrom AR, Gloriam DE, Larsson TP, Schioth HB, et al. The G protein - Coupled receptor subset of the chicken genome PLOS COMPUTATIONAL BIOLOGY. 2006 JUN; 2 (6): Art. No. e54	0	31	14	95
497	5261 Kondrashov FA, Ogurtsov AY, Kondrashov AS Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites JOURNAL OF THEORETICAL BIOLOGY. 2006 JUN 21; 240 (4): 616-626	4	20	14	96
498	5339 Yu J, Ni PX, Wong GKS Comparing the whole-genome-shotgun and map-based sequences of the rice genome TRENDS IN PLANT SCIENCE. 2006 AUG; 11 (8): 387-391	0	3	14	34
499	5360 Ustyugova SV, Lebedev YB, Sverdlov ED Long L1 insertions in human gene introns specifically reduce the content of corresponding primary transcripts GENETICA. 2006 SEP; 128 (1-3): 261-272	7	10	14	24
500	5375 Yang N, Kazazian HH L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells NATURE STRUCTURAL & MOLECULAR BIOLOGY. 2006 SEP; 13 (9): 763-771	19	70	14	54

Date / Author / Journal

LCS

GCS

LCR

401

3369 Jensen-Seaman MI, Furey TS, Payseur BA, Lu YT, Roskin KM, et al.

Comparative recombination rates in the rat, mouse, and human genomes

GENOME RESEARCH. 2004 APR; 14 (4): 528-538

402

3414 Dunham A, Matthews LH, Burton J, Ashurst JL, Howe KL, et al.

The DNA sequence and analysis of human chromosome 13

NATURE. 2004 APR 1; 428 (6982): 522-528

403

3507 Deloukas P, Earthrowl ME, Grafham DV, Rubenfield M, French L, et al.

The DNA sequence and comparative analysis of human chromosome 10

NATURE. 2004 MAY 27; 429 (6990): 375-381

404

3530 Hedges DJ, Callinan PA, Cordaux R, Xing J, Barnes E, et al.

Differential Alu mobilization and polymorphism among the human and chimpanzee lineages

GENOME RESEARCH. 2004 JUN; 14 (6): 1068-1075

405

3609 Castresana J, Guigo R, Alba MM

Clustering of genes coding for DNA binding proteins in a region of atypical evolution of the human genome

JOURNAL OF MOLECULAR EVOLUTION. 2004 JUL; 59 (1): 72-79

406

3649 Schulz HL, Goetz T, Kaschkoetoe J, Weber BHF

The retinome - Defining a reference transcriptome of the adult mammalian retina/retinal pigment epithelium

BMC GENOMICS. 2004 JUL 29; 5: Art. No. 50

407

3827 Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, et al.

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

NATURE. 2004 OCT 21; 431 (7011): 946-957

521

408

4059 Aloni R, Lancet D

Conservation anchors in the vertebrate genome

GENOME BIOLOGY. 2005; 6 (7): Art. No. 115

409

4212 Ng P, Wei CL, Sung WK, Chiu KP, Lipovich L, et al.

Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation

NATURE METHODS. 2005 FEB; 2 (2): 105-111

410

4399 Callinan PA, Wang JX, Herke SW, Garber RK, Liang P, et al.

Alu retrotransposition-mediated deletion

JOURNAL OF MOLECULAR BIOLOGY. 2005 MAY 13; 348 (4): 791-800

Date / Author / Journal

LCS

GCS

LCR

411

4402 Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, et al.

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

SCIENCE. 2005 MAY 20; 308 (5725): 1149-1154

346

412

4470 Pozzoli U, Sironi M

Silencers regulate both constitutive and alternative splicing events in mammals

CELLULAR AND MOLECULAR LIFE SCIENCES. 2005 JUL; 62 (14): 1579-1604

184

413

4573 Wang W, Zheng HK, Yang S, Yu HJ, Li J, et al.

Origin and evolution of new exons in rodents

GENOME RESEARCH. 2005 SEP; 15 (9): 1258-1264

414

4662 Panopoulou G, Poustka AJ

Timing and mechanism of ancient vertebrate genome duplications - the adventure of a hypothesis

TRENDS IN GENETICS. 2005 OCT; 21 (10): 559-567

415

4746 Wang W, Kirkness EF

Short interspersed elements (SINEs) are a major source of canine genomic diversity

GENOME RESEARCH. 2005 DEC; 15 (12): 1798-1808

416

4789 Bourque G, Zhang LX

Models and methods in comparative genomics

ADVANCES IN COMPUTERS , VOL 68. 2006; 68: 59-104

172

417

4916 Khan H, Smit A, Boissinot S

Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates

GENOME RESEARCH. 2006 JAN; 16 (1): 78-87

418

4992 Kuroki Y, Toyoda A, Noguchi H, Taylor TD, Itoh T, et al.

Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway

NATURE GENETICS. 2006 FEB; 38 (2): 158-+

419

5042 Wang XX, Grus WE, Zhang JZ

Gene losses during human origins

PLOS BIOLOGY. 2006 MAR; 4 (3): Art. No. e52

420

5065 Kovalskaya E, Buzdin A, Gogvadze E, Vinogradova T, Sverdlov E

Functional human endogenous retroviral LTR transcription start sites are located between the R and U5 regions

VIROLOGY. 2006 MAR 15; 346 (2): 373-378

Date / Author / Journal

LCS

GCS

LCR

421

5128 Feuk L, Marshall CR, Wintle RF, Scherer SW

Structural variants: changing the landscape of chromosomes and design of disease studies

HUMAN MOLECULAR GENETICS. 2006 APR 15; 15: R57-R66

127

422

5197 Cordaux R, Hedges DJ, Herke SW, Batzer MA

Estimating the retrotransposition rate of human Alu elements

GENE. 2006 MAY 24; 373: 134-137

423

5283 Nishihara H, Smit AFA, Okada N

Functional noncoding sequences derived from SINEs in the mammalian genome

GENOME RESEARCH. 2006 JUL; 16 (7): 864-874

424

5408 Ivics Z, Izsvak Z

Transposons for gene therapy!

CURRENT GENE THERAPY. 2006 OCT; 6 (5): 593-607

166

425

5512 Khaja R, Zhang JJ, MacDonald JR, He YS, Joseph-George AM, et al.

Genome assembly comparison identifies structural variants in the human genome

NATURE GENETICS. 2006 DEC; 38 (12): 1413-1418

426

5552 Lareau LF, Brooks AN, Soergel DAW, Meng Q, Brenner SE

The coupling of alternative splicing and nonsense-mediated mRNA decay

ALTERNATIVE SPLICING IN THE POSTGENOMIC ERA. 2007; 623: 190-211

109

427

5565 Tellam RL

Capturing benefits from the bovine genome sequence

AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE. 2007; 47 (9): 1039-1050

428

5575 Schmegner C, Hameister H, Vogel W, Assum G

Isochores and replication time zones: a perfect match

CYTOGENETIC AND GENOME RESEARCH. 2007; 116 (3): 167-172

429

5619 Arneodo A, Audit B, Brodie EBBO, Nicolay S, St Jean P, et al.

DNA IN CHROMATIN: FROM GENOME-WIDE SEQUENCE ANALYSIS TO THE MODELING OF REPLICATION IN MAMMALS

SPECIAL VOLUME IN MEMORY OF ILYA PRIGOGINE. 2007; 135: 203-252

161

430

5819 Hulme AE, Bogerd HP, Cullen BR, Moran JV

Selective inhibition of Alu retrotransposition by APOBEC3G

GENE. 2007 APR 1; 390 (1-2): 199-205

Date / Author / Journal

LCS

GCS

LCR

431

5833 Schioth HB, Nordstrom KJV, Fredriksson R

Mining the gene repertoire and ESTs for G protein-coupled receptors with evolutionary perspective

ACTA PHYSIOLOGICA. 2007 MAY; 190 (1): 21-31

432

5961 Styles P, Brookfield JFY

Analysis of the features and source gene composition of the AluYg6 subfamily of human retrotransposons

BMC EVOLUTIONARY BIOLOGY. 2007 JUL 1; 7: Art. No. 102

433

5968 Lerat E, Semon M

Influence of the transposable element neighborhood on human gene expression in normal and tumor tissues

GENE. 2007 JUL 15; 396 (2): 303-311

434

6033 Jiang CZ, Han L, Su B, Li WH, Zhao ZM

Features and trend of loss of promoter-associated CpG islands in the human and mouse genomes

MOLECULAR BIOLOGY AND EVOLUTION. 2007 SEP; 24 (9): 1991-2000

435

6074 Fiston-Lavier AS, Anxolabehere D, Quesneville H

A model of segmental duplication formation in Drosophila melanogaster

GENOME RESEARCH. 2007 OCT; 17 (10): 1458-1470

436

6105 Kleino I, Ortiz RM, Huovila APJ

ADAM15 gene structure and differential alternative exon use in human tissues

BMC MOLECULAR BIOLOGY. 2007 OCT 15; 8: Art. No. 90

107

437

6197 Yang W, Li QZ

Prediction of alternative 5 '/3 ' splice sites in the human genome

BMEI 2008: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOMEDICAL ENGINEERING AND INFORMATICS, VOL 1. 2008; : 143-147

438

6458 Dalkilic MM, Costello JC, Clark WT, Radivojac P

From protein-disease associations to disease informatics

FRONTIERS IN BIOSCIENCE. 2008 MAY; 13: 3391-3407

184

439

6542 Tadepally HD, Burger G, Aubry M

Evolution of C2H2-zinc finger genes and subfamilies in mammals: Species-specific duplication and loss of clusters, genes and effector domains

BMC EVOLUTIONARY BIOLOGY. 2008 JUN 18; 8: Art. No. 176

440

6562 Louro R, El-Jundi T, Nakaya HI, Reis EM, Verjovski-Almeida S

Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci

GENOMICS. 2008 JUL; 92 (1): 18-25

Date / Author / Journal

441

The human genome in the LINE of fire

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008 DEC 9; 105 (49): 19033-19034

442

6862 Tazi J, Bakkour N, Stamm S

Alternative splicing and disease

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE. 2009 JAN; 1792 (1): 14-26

188

443

6913 Khazina E, Weichenrieder O

Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2009 JAN 20; 106 (3): 731-736

444

6918 Freudenberg J, Wang MY, Yang YN, Li WT

Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome

BMC BIOINFORMATICS. 2009 JAN 30; 10: Art. No. S66

445

6933 Chen CJ, Ara T, Gautheret D

Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation

MOLECULAR BIOLOGY AND EVOLUTION. 2009 FEB; 26 (2): 327-334

446

7080 Aravind L, Anantharaman V, Venancio TM

Apprehending Multicellularity: Regulatory Networks, Genomics, and Evolution

BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS. 2009 JUN; 87 (2): 143-164

203

447

7104 Li XY, Slife J, Patel N, Zhao SY

Stepwise evolution of two giant composite LTR-retrotransposon-like elements DA and Xiao

BMC EVOLUTIONARY BIOLOGY. 2009 JUN 5; 9: Art. No. 128

448

7127 Marchani EE, Xing JC, Witherspoon DJ, Jorde LB, Rogers AR

Estimating the age of retrotransposon subfamilies using maximum likelihood

GENOMICS. 2009 JUL; 94 (1): 78-82

449

7179 Melamud E, Moult J

Structural implication of splicing stochastics

NUCLEIC ACIDS RESEARCH. 2009 AUG; 37 (14): 4862-4872

450

7180 Melamud E, Moult J

Stochastic noise in splicing machinery

NUCLEIC ACIDS RESEARCH. 2009 AUG; 37 (14): 4873-4886

Date / Author / Journal

451

Transposable Elements and Factors Influencing their Success in Eukaryotes

JOURNAL OF HEREDITY. 2009 SEP-OCT; 100 (5): 648-655

452

7323 Cruickshanks HA, Tufarelli C

Isolation of cancer-specific chimeric transcripts induced by hypomethylation of the LINE-1 antisense promoter

GENOMICS. 2009 DEC; 94 (6): 397-406

453

7326 Luchetti A, Mantovani B

Talua SINE Biology in the Genome of the Reticulitermes Subterranean Termites (Isoptera, Rhinotermitidae)

JOURNAL OF MOLECULAR EVOLUTION. 2009 DEC; 69 (6): 589-600

454

1493 Maniatis T, Tasic B

Alternative pre-mRNA splicing and proteome expansion in metazoans

NATURE. 2002 JUL 11; 418 (6894): 236-243

349

455

2284 Barr MM

Super models

PHYSIOLOGICAL GENOMICS. 2003 MAR 18; 13 (1): 15-24

107

456

2372 Stankiewicz P, Shaw CJ, Dapper JD, Wakui K, Shaffer LG, et al.

Genome architecture catalyzes nonrecurrent chromosomal rearrangements

AMERICAN JOURNAL OF HUMAN GENETICS. 2003 MAY; 72 (5): 1101-1116

457

2440 Thanaraj TA, Clark F, Muilu J

Conservation of human alternative splice events in mouse

NUCLEIC ACIDS RESEARCH. 2003 MAY 15; 31 (10): 2544-2552

458

2596 Hillier LW, Fulton RS, Fulton LA, Graves TA, Pepin KH, et al.

The DNA sequence of human chromosome 7

NATURE. 2003 JUL 10; 424 (6945): 157-U2

459

2729 Horvath JE, Gulden CL, Bailey JA, Yohn C, Mcpherson JD, et al.

Using a pericentromeric interspersed repeat to recapitulate the phylogeny and expansion of human centromeric segmental duplications

MOLECULAR BIOLOGY AND EVOLUTION. 2003 SEP; 20 (9): 1463-1479

460

2995 de Hoog CL, Mann M

Proteomics

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2004; 5: 267-293

122

Date / Author / Journal

LCS

GCS

LCR

461

3179 Ruan YJ, Le Ber P, Ng HH, Liu ET

Interrogating the transcriptome

TRENDS IN BIOTECHNOLOGY. 2004 JAN; 22 (1): 23-30

462

3368 Yang S, Smit AF, Schwartz S, Chiaromonte F, Roskin KM, et al.

Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes

GENOME RESEARCH. 2004 APR; 14 (4): 517-527

463

3508 Watanabe H, Fujiyama A, Hattori M, Taylor TD, Toyoda A, et al.

DNA sequence and comparative analysis of chimpanzee chromosome 22

NATURE. 2004 MAY 27; 429 (6990): 382-388

113

464

3721 Li WT, Holste D

Spectral analysis of guanine and cytosine fluctuations of mouse genomic DNA

FLUCTUATION AND NOISE LETTERS. 2004 SEP; 4 (3): L453-L464

465

3725 Suzuki Y, Yamashita R, Shirota M, Sakakibara Y, Chiba J, et al.

Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions

GENOME RESEARCH. 2004 SEP; 14 (9): 1711-1718

466

3808 Antonarakis SE, Lyle R, Dermitzakis ET, Reymond A, Deutsch S

Chromosome 21 and Down syndrome: From genomics to pathophysiology

NATURE REVIEWS GENETICS. 2004 OCT; 5 (10): 725-738

467

3815 Bannert N, Kurth R

Retroelements and the human genome: New perspectives on an old relation

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2004 OCT 5; 101: 14572-14579

105

107

468

3857 Macfarlane C, Simmonds P

Allelic variation of HERV-K(HML-2) endogenous retroviral elements in human populations

JOURNAL OF MOLECULAR EVOLUTION. 2004 NOV; 59 (5): 642-656

469

3997 Dalrymple BP

Harnessing the bovine genome sequence for the Australian cattle and sheep industries

AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE. 2005; 45 (7-8): 1011-1016

470

4086 Zdobnov EM, Campillos M, Harrington ED, Torrents D, Bork P

Protein coding potential of retroviruses and other transposable elements in vertebrate genomes

NUCLEIC ACIDS RESEARCH. 2005; 33 (3): 946-954

Date / Author / Journal

LCS

GCS

LCR

471

4092 Perreault J, Noel JF, Briere F, Cousineau B, Lucier JF, et al.

Retropseudogenes derived from the human Ro/SS-A autoantigen-associated hY RNAs

NUCLEIC ACIDS RESEARCH. 2005; 33 (6): 2032-2041

472

4110 Valente L, Nishikura K

ADAR gene family and A-to-I RNA editing: Diverse roles in Posttranscriptional gene regulation

PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 79. 2005; 79: 299-338

187

473

4140 Ovcharenko I, Loots GG, Nobrega MA, Hardison RC, Miller W, et al.

Evolution and functional classification of vertebrate gene deserts

GENOME RESEARCH. 2005 JAN; 15 (1): 137-145

474

4141 Kellner WA, Sullivan RT, Carlson BH, Thomas JW, NISC Comp Sequ Prog

Uprobe: A genome-wide universal probe resource for comparative physical mapping in vertebrates

GENOME RESEARCH. 2005 JAN; 15 (1): 166-173

475

4149 Andersen JN, Del Vecchio RL, Kannan N, Gergel J, Neuwald AF, et al.

Computational analysis of protein tyrosine phosphatases: practical guide to bioinformatics and data resources

METHODS. 2005 JAN; 35 (1): 90-114

476

4182 Shapiro JA

A 21st century view of evolution: genome system architecture, repetitive DNA, and natural genetic engineering

GENE. 2005 JAN 17; 345 (1): 91-100

477

4201 Milosavljevic A, Harris RA, Sodergren EJ, Jackson AR, Kalafus KJ, et al.

Pooled genomic indexing of rhesus macaque

GENOME RESEARCH. 2005 FEB; 15 (2): 292-301

478

4239 Washietl S, Hofacker IL, Stadler PF

Fast and reliable prediction of noncoding RNAs

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2005 FEB 15; 102 (7): 2454-2459

200

479

4266 Belle EMS, Webster MT, Eyre-Walker A

Why are young and old repetitive elements distributed differently in the human genome?

JOURNAL OF MOLECULAR EVOLUTION. 2005 MAR; 60 (3): 290-296

480

4278 Reis EM, Louro R, Nakaya HI, Verjovski-Almeida S

As antisense RNA gets intronic

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY. 2005 MAR; 9 (1): 2-12

Date / Author / Journal

LCS

GCS

LCR

481

4299 Zheng XH, Lu F, Wang ZY, Hoover J, Mural R

Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs

BIOINFORMATICS. 2005 MAR 15; 21 (6): 703-710

482

4342 Ellegren H

The avian genome uncovered

TRENDS IN ECOLOGY & EVOLUTION. 2005 APR; 20 (4): 180-186

483

4371 Han KD, Xing J, Wang H, Hedges DJ, Garber RK, et al.

Under the genomic radar: The Stealth model of Alu amplification

GENOME RESEARCH. 2005 MAY; 15 (5): 655-664

484

4388 Han K, Yeo G, An P, Burge CB, Grabowski PJ

A combinatorial code for splicing silencing: UAGG and GGGG motifs

PLOS BIOLOGY. 2005 MAY; 3 (5): Art. No. e158

485

4415 Andersson JO

Lateral gene transfer in eukaryotes

CELLULAR AND MOLECULAR LIFE SCIENCES. 2005 JUN; 62 (11): 1182-1197

115

486

4469 Gel'fand MS

The apology of bioinformatics

BIOFIZIKA. 2005 JUL-AUG; 50 (4): 752-766

147

487

4631 Newman TL, Tuzun E, Morrison VA, Hayden KE, Ventura M, et al.

A genome-wide survey of structural variation between human and chimpanzee

GENOME RESEARCH. 2005 OCT; 15 (10): 1344-1356

488

4648 Gentles AJ, Kohany O, Jurka J

Evolutionary diversity and potential recombinogenic role of integration targets of non-LTR retrotransposons

MOLECULAR BIOLOGY AND EVOLUTION. 2005 OCT; 22 (10): 1983-1991

489

4888 Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, et al.

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs

NUCLEIC ACIDS RESEARCH. 2006; 34 (14): 3917-3928

490

4912 Sinibaldi-Vallebona P, Lavia P, Garaci E, Spadafora C

A role for endogenous reverse transcriptase in tumorigenesis and as a target in differentiating cancer therapy

GENES CHROMOSOMES & CANCER. 2006 JAN; 45 (1): 1-10

Date / Author / Journal

LCS

GCS

LCR

491

4993 Feuk L, Carson AR, Scherer SW

Structural variation in the human genome

NATURE REVIEWS GENETICS. 2006 FEB; 7 (2): 85-97

323

113

492

5044 Glusman G, Qin SZ, El-Gewely R, Siegel AF, Roach JC, et al.

A third approach to gene prediction suggests thousands of additional human transcribed regions

PLOS COMPUTATIONAL BIOLOGY. 2006 MAR; 2 (3): Art. No. e18

493

5114 Hayashizaki Y, Carninci P

Genome network and FANTOM3: Assessing the complexity of the transcriptome

PLOS GENETICS. 2006 APR; 2 (4): Art. No. e63

494

5132 Chakravarti R, Adams JC

Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates

BMC GENOMICS. 2006 APR 18; 7: Art. No. 83

110

495

5221 Thill G, Castelli V, Pallud S, Salanoubat M, Wincker P, et al.

ASEtrap: A biological method for speeding up the exploration of spliceomes

GENOME RESEARCH. 2006 JUN; 16 (6): 776-786

496

5241 Lagerstrom MC, Hellstrom AR, Gloriam DE, Larsson TP, Schioth HB, et al.

The G protein - Coupled receptor subset of the chicken genome

PLOS COMPUTATIONAL BIOLOGY. 2006 JUN; 2 (6): Art. No. e54

497

5261 Kondrashov FA, Ogurtsov AY, Kondrashov AS

Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites

JOURNAL OF THEORETICAL BIOLOGY. 2006 JUN 21; 240 (4): 616-626

498

5339 Yu J, Ni PX, Wong GKS

Comparing the whole-genome-shotgun and map-based sequences of the rice genome

TRENDS IN PLANT SCIENCE. 2006 AUG; 11 (8): 387-391

499

5360 Ustyugova SV, Lebedev YB, Sverdlov ED

Long L1 insertions in human gene introns specifically reduce the content of corresponding primary transcripts

GENETICA. 2006 SEP; 128 (1-3): 261-272

500

5375 Yang N, Kazazian HH

L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells

NATURE STRUCTURAL & MOLECULAR BIOLOGY. 2006 SEP; 13 (9): 763-771

Initial sequencing and analysis of the human genome (Lander) The papers citing Lander ES, et al. "Initial sequencing and analysis of the human genome." NATURE. 2001 FEB 15; 409 (6822): 860-921	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 38623, GCS 253809, CR 422506 Collection span: 2000 - 2010
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