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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
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#LCRNCRNodes / Authors / DateLCSGCS
401427336 2004 BIOINFORMATICS 20(2):148-154
Liu L; Gong G; Liu Y; Natarajan S; Larkin DM; Everts-van der Wind A; Rebeiz M; Beever JE
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402921337 2004 BIOINFORMATICS 20(5):636-U122
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Good spaced seeds for homology search
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406238341 2004 BMC BIOINFORMATICS 5():-
Swart EC; Hide WA; Seoighe C
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40725342 2004 BMC BIOINFORMATICS 5():-
Chi B; deLeeuw RJ; Coe BP; MacAulay C; Lam WL
SeeGH - A software tool for visualization of whole genome array comparative genomic hybridization data
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408321344 2004 BMC EVOLUTIONARY BIOLOGY 4():-
Kendal WS
A scale invariant clustering of genes on human chromosome 7
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409148345 2004 BMC GENETICS 5():-
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A new set of BXD recombinant inbred lines from advanced intercross populations in mice
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410179347 2004 BRAIN RESEARCH 1000(1-2):156-173
Yu LQ; Frith MC; Suzuki Y; Peterfreund RA; Gearan T; Sugano S; Schwarzschild MA; Weng ZP; Fink JS; Chen JF
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00
#LCRNCRNodes / Authors / DateLCSGCS
4113113348 2004 CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE 26(1):19-30
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Recent progress, developments, and issues in comparative fungal genomics
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412121351 2004 CELLULAR AND MOLECULAR LIFE SCIENCES 61(4):488-496
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Recent evolutionary origin within the primate lineage of two pseudogenes with similarity to members of the transforming growth factor-beta superfamily
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413143352 2004 CHINESE SCIENCE BULLETIN 49(2):146-152
Tian M; Xiong YL; Wang WY; Zhang YP
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414229353 2004 CHROMOSOME RESEARCH 12(3):251-262
Xu HL; Qian YP; Nie WH; Chi JX; Yang FT; Su B
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415239354 2004 CURRENT OPINION IN PLANT BIOLOGY 7(2):102-107
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Sequencing the maize genome
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416231355 2004 DEVELOPMENT GENES AND EVOLUTION 214(2):64-71
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417163356 2004 DEVELOPMENTAL BIOLOGY 265(2):462-477
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Conserved elements in Pax6 intron 7 involved in (auto)regulation and alternative transcription
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418142357 2004 DEVELOPMENTAL BIOLOGY 268(1):7-23
Ficker M; Powles N; Warr N; Pirvola U; Maconochie M
Analysis of genes from inner ear developmental-stage cDNA subtraction reveals molecular regionalization of the otic capsule
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419153358 2004 DEVELOPMENTAL BIOLOGY 269(1):276-285
Svoboda P; Stein P; Anger M; Bernstein E; Hannon GJ; Schultz RM
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421125360 2004 DNA AND CELL BIOLOGY 23(3):167-173
Di Tommaso A; Soler C; Roos C; Kitzis A; Ladeveze V
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422135361 2004 DNA REPAIR 3(1):33-41
Dore AS; Drake ACB; Brewerton SC; Blundell TL
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423131362 2004 EUROPEAN JOURNAL OF CELL BIOLOGY 83(1):19-26
Hesse M; Zimek A; Weber K; Magin TM
Comprehensive analysis of keratin gene clusters in humans and rodents
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424149363 2004 EUROPEAN JOURNAL OF HUMAN GENETICS 12(2):139-149
Kaufmann D; Kenner O; Nurnberg P; Vogel W; Bartelt B
InNF1, CFTR, PER3, CARS and SYT7, alternatively included exons show higher conservation of surrounding intron sequences than constitutive exons
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425115365 2004 EXPERIMENTAL ANIMALS 53(2):151-154
Sakai T; Miura I; Yamada-Ishibashi S; Wakita Y; Kohara Y; Yamazaki Y; Inoue T; Kominami R; Moriwaki K; Shiroishi T; Yonekawa H; Kikkawa Y
Update of mouse microsatellite database of Japan (MMDBJ)
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426131366 2004 EXPERIMENTAL GERONTOLOGY 39(6):913-916
Martin GM
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4272116368 2004 GENE 324():15-34
Gregory TR
Insertion-deletion biases and the evolution of genome size
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428136369 2004 GENE 325():25-34
Wang ZY; Peters B; KLussmann S; Bender H; Herb A; Krieglstein K
Gene structure and evolution of Tieg3, a new member of the Tieg family of proteins
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429137370 2004 GENE 325():145-155
Poloumienko A; Cote A; Ten Quee AT; Zhu L; Bakovic M
Genomic organization and differential splicing of the mouse and human Pcyt2 genes
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430130371 2004 GENE 325():179-186
Osawa M; Horiuchi H; Tian W; Kaneko M
Divergent evolution of the prolactin-inducible protein gene and related genes in the mouse genome
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#LCRNCRNodes / Authors / DateLCSGCS
431124372 2004 GENE 330():19-27
Chavanas S; Mechin MC; Takahara H; Kawada A; Nachat R; Serre G; Simon M
Comparative analysis of the mouse and human peptidylarginine deiminase gene clusters reveals highly conserved non-coding segments and a new human gene, PADI6
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432134373 2004 GENE 333():135-141
Paces J; Zika R; Paces V; Pavlicek A; Clay O; Bernardi G
Representing GC variation along eukaryotic chromosomes
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433228375 2004 GENE THERAPY 11(8):711-721
Wang Z; Troilo PJ; Wang X; Griffiths TG; Pacchione SJ; Barnum AB; Harper LB; Pauley CJ; Niu Z; Denisova L; Follmer TT; Rizzuto G; Ciliberto G; Fattori E; Monica NL; Manam S; Ledwith BJ
Detection of integration of plasmid DNA into host genomic DNA following intramuscular injection and electroporation
00
434127376 2004 GENES CHROMOSOMES & CANCER 40(2):158-163
Lastowska M; Chung YJ; Ching NC; Haber M; Norris MD; Kees UR; Pearson ADJ; Jackson MS
Regions syntenic to human 17q are gained in mouse and rat neuroblastoma
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435141377 2004 GENES TO CELLS 9(4):331-344
Andachi Y
Caenorhabditis elegans T-box genes tbx-9 and tbx-8 are required for formation of hypodermis and body-wall muscle in embryogenesis
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436127378 2004 GENESIS 38(2):51-57
Kumar RA; Chan KL; Wong AHW; Little KQ; Rajcan-Separovic E; Abrahams BS; Simpson EM
Unexpected embryonic stem (ES) cell mutations represent a concern in gene targeting: Lessons from "Fierce" mice
00
437387379 2004 GENETICS 167(1):377-385
Sundstrom H; Webster MT; Ellegren H
Reduced variation on the chicken Z chromosome
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438479380 2004 GENETICS 167(1):423-437
Nachman MW; D'Agostino SL; Tillquist CR; Mobasher Z; Hammer MF
Nucleotide variation at Msn and Alas2, two genes flanking the centromere of the X chromosome in humans
00
4397125381 2004 GENOME BIOLOGY 5(1):-
Bulyk ML
Computational prediction of transcription-factor binding site locations
00
4402133382 2004 GENOME BIOLOGY 5(2):-
Koonin EV; Fedorova ND; Jackson JD; Jacobs AR; Krylov DM; Makarova KS; Mazumder R; Mekhedov SL; Nikolskaya AN; Rao BS; Rogozin IB; Smirnov S; Sorokin AV; Sverdlov AV; Vasudevan S; Wolf YI; Yin JJ; Natale DA
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
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#LCRNCRNodes / Authors / DateLCSGCS
441434383 2004 GENOME BIOLOGY 5(2):-
Kurtz S; Phillippy A; Delcher AL; Smoot M; Shumway M; Antonescu C; Salzberg SL
Versatile and open software for comparing large genomes
00
442116384 2004 GENOME BIOLOGY 5(3):-
McCarthy EM; McDonald JF
Long terminal repeat retrotransposons of Mus musculus
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443836385 2004 GENOME BIOLOGY 5(4):-
Bailey JA; Baertsch R; Kent WJ; Haussler D; Eichler EE
Hotspots of mammalian chromosomal evolution
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444373386 2004 GENOME BIOLOGY 5(4):-
Shabalina SA; Spiridonov NA
The mammalian transcriptome and the function of non-coding DNA sequences
00
445128387 2004 GENOME RESEARCH 14(1):54-61
Winter EE; Goodstadt L; Ponting CP
Elevated rates of protein secretion, evolution, and disease among tissue-specific genes
00
446140388 2004 GENOME RESEARCH 14(1):79-89
Zhang T; Haws P; Wu Q
Multiple variable first exons: A mechanism for cell-and tissue-specific gene regulation
00
447126389 2004 GENOME RESEARCH 14(1):188-196
Chung YJ; Jonkers J; Kitson H; Fiegler H; Humphray S; Scott C; Hunt S; Yu Y; Nishijima I; Velds A; Holstege H; Carter N; Bradley A
A whole-genome mouse BAC microarray with 1-Mb resolution for analysis of DNA copy number changes by array comparative genomic hybridization
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448131390 2004 GENOME RESEARCH 14(2):267-272
Sandstedt SA; Tucker PK
Evolutionary strata on the mouse X chromosome correspond to strata on the human X chromosome
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449426393 2004 GENOME RESEARCH 14(3):442-450
Keightley PD; Johnson T
MCALIGN: Stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution
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450432394 2004 GENOME RESEARCH 14(3):451-458
Liu YY; Liu XS; Wei LP; Altman RB; Batzoglou S
Eukaryotic regulatory element conservation analysis and identification using comparative genomics
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451332395 2004 GENOME RESEARCH 14(3):463-471
Porcel BM; Delfour O; Castelli V; De Berardinis V; Friedlander L; Cruaud C; Ureta-Vidal A; Scarpelli C; Wincker P; Schachter V; Saurin W; Gyapay G; Salanoubat M; Weissenbach J
Numerous novel annotations of the human genome sequence supported by a 5 '-end-enriched cDNA collection
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452346406 2004 GENOME RESEARCH 14(4):603-608
Lane RP; Young J; Newman T; Trask BJ
Species specificity in rodent pheromone receptor repertoires
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453132407 2004 GENOME RESEARCH 14(4):623-630
Tufarelli C; Hardison R; Miller W; Hughes J; Clark K; Ventress N; Frischauf AM; Higgs DR
Comparative analysis of the at-like globin clusters in mouse, rat, and human chromosomes indicates a mechanism underlying breaks in conserved synteny
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454332416 2004 GENOME RESEARCH 14(4):758-765
Wilder SP; Bihoreau MT; Argoud K; Watanabe TK; Lathrop M; Gauguier D
Integration of the rat recombination and EST maps in the rat genomic sequence and comparative mapping analysis with the mouse genome
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455851419 2004 GENOME RESEARCH 14(5):789-801
Bailey JA; Church DM; Ventura M; Rocchi M; Eichler EE
Analysis of segmental duplications and genome assembly in the mouse
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456362420 2004 GENOME RESEARCH 14(5):802-811
Castillo-Davis CI; Kondrashov FA; Hartl DL; Kulathinal RJ
The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint
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457217421 2004 GENOME RESEARCH 14(5):829-834
Tanay A; Gat-Viks I; Shamir R
A global view of the selection forces in the evolution of yeast cis-regulation
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458328423 2004 GENOME RESEARCH 14(5):942-950
Curwen V; Eyras E; Andrews TD; Clarke L; Mongin E; Searle SMJ; Clamp M
The Ensembl automatic gene annotation system
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459114424 2004 GENOME RESEARCH 14(5):963-970
Searle SMJ; Gilbert J; Iyer V; Clamp M
The Otter annotation system
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Birney E; Clamp M; Durbin R
GeneWise and genomewise
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461642426 2004 GENOME RESEARCH 14(6):1191-1198
Ovcharenko I; Boffelli D; Loots GG
EShadow: A tool for comparing closely related sequences
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462149428 2004 GENOMICS 83(1):106-118
Naumann F; Remus R; Schmitz B; Doerfler W
Gene structure and expression of the 5 '-(CGG)(n)-3 '-binding protein (CGGBP1)
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463117429 2004 GENOMICS 83(2):225-230
Karim SA; Johnson KJ; Griffiths IR; Vouyiouklis DA
A physical map of the genomic region on mouse chromosome 3 containing the hindshaker (hsh) mutation
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464130430 2004 GENOMICS 83(3):373-383
Clark RM; Dalgliesh GL; Endres D; Gomez M; Taylor J; Bidichandani SI
Expansion of GAA triplet repeats in the human genome: unique origin of the FRDA mutation at the center of an Alu
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465138431 2004 GENOMICS 83(3):384-394
Zhang CT; Zhang R
Isochore structures in the mouse genome
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466148432 2004 GENOMICS 83(4):577-587
Smolenski A; Schultess J; Danielewski O; Arguinzonis MIG; Thalheimer P; Kneitz S; Walter U; Lohmann SM
Quantitative analysis of the cardiac fibroblast transcriptome-implications for NO/cGMP signaling
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467133433 2004 GENOMICS 83(4):636-646
Choi IC; Oh JS; Cho BN; Ahnn JH; Jung YK; Kim DH; Cho CH
Characterization and comparative genomic analysis of intronless Adams with testicular gene expression
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468448434 2004 GENOMICS 83(4):694-705
Long LY; Davidson JN; Spear BT
Striking differences between the mouse and the human alpha-fetoprotein enhancers
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469167435 2004 GENOMICS 83(5):790-801
Pimenta AF; Levitt P
Characterization of the genomic structure of the mouse limbic system-associated membrane protein (Lsamp) gene
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470287437 2004 GENOMICS 83(6):1012-1023
Beisel KW; Shiraki T; Morris KA; Pompeia C; Kachar B; Arakawa T; Bono H; Kawai J; Hayashizaki Y; Carninci P
Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library
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471230438 2004 GENOMICS 83(6):1063-1071
Ohtsuka M; Kikuchi N; Ozato K; Inoko H; Kimura M
Comparative analysis of a 229-kb medaka genomic region, containing the zic1 and zic4 genes, with Fugu, human, and mouse
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47245439 2004 HEREDITY 92(5):363-364
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Functional needles in a genomic haystack
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473123440 2004 HUMAN MUTATION 23(2):170-176
Ianzano L; Young EJ; Zhao XC; Chan EM; Rodriguez MT; Torrado MV; Scherer SW; Minassian BA
Loss of function of the cytoplasmic isoform of the protein laforin (EPM2A) causes lafora progressive myoclonus epilepsy
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474169441 2004 IMMUNITY 20(6):669-679
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Illuminating autoimmune regulators through controlled variation of the mouse genome sequence
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475180442 2004 IMMUNOGENETICS 55(10):655-666
Kwakkenbos MJ; Kop EN; Stacey M; Matmati M; Gordon S; Lin HH; Hamann J
The EGF-TM7 family: a postgenomic view
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4765196443 2004 JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY 37(1):93-106
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Yeast as a touchstone in post-genomic research: Strategies for integrative analysis in functional genomics
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477150445 2004 JOURNAL OF BIOLOGICAL CHEMISTRY 279(23):24467-24476
Broer A; Klingel K; Kowalczuk S; Rasko JEJ; Cavanaugh J; Broer S
Molecular cloning of mouse amino acid transport system B-0, a neutral amino acid transporter related to Hartnup disorder
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4781184446 2004 JOURNAL OF BIOMEDICAL SCIENCE 11(3):278-294
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Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression
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479183447 2004 JOURNAL OF BONE AND MINERAL RESEARCH 19(4):587-599
Bouxsein ML; Uchiyama T; Rosen CJ; Shultz KL; Donahue LR; Turner CH; Sen S; Churchill GA; Muller R; Beamer WG
Mapping quantitative trait loci for vertebral trabecular bone volume fraction and microarchitecture in mice
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480239448 2004 JOURNAL OF BONE AND MINERAL RESEARCH 19(4):600-606
Judex S; Garman R; Squire M; Donahue LR; Rubin C
Genetically based influences on the site-specific regulation of trabecular and cortical bone morphology
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481190449 2004 JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES 803(1):3-16
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Peptidomics
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482135451 2004 JOURNAL OF INFECTIOUS DISEASES 189(7):1245-1256
Sexton AC; Good RT; Hansen DS; D'Ombrain MC; Buckingham L; Simpson K; Schofield L
Transcriptional profiling reveals suppressed erythropoiesis, up-regulated glycolysis, and interferon-associated responses in murine malaria
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483167452 2004 JOURNAL OF INHERITED METABOLIC DISEASE 27(3):319-330
Druker R; Whitelaw E
Retrotransposon-derived elements in the mammalian genome: A potential source of disease
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484133453 2004 JOURNAL OF MOLECULAR EVOLUTION 58(1):122-130
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Different rates of LINE-1 (L1) retrotransposon amplification and evolution in new world monkeys
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485293454 2004 JOURNAL OF MOLECULAR MEDICINE-JMM 82(4):232-239
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The Ro 60 kDa autoantigen: insights into cellular function and role in autoimmunity
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486136455 2004 JOURNAL OF NEUROCHEMISTRY 89(5):1271-1282
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Delayed genomic responses to transient middle cerebral artery occlusion in the rat
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487138458 2004 JOURNAL OF PINEAL RESEARCH 36(3):165-170
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Age-related changes in murine CNS mRNA gene expression are modulated by dietary melatonin
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4881112459 2004 JOURNAL OF PROTEOME RESEARCH 3(2):296-306
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Proteomics in malaria
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489162460 2004 JOURNAL OF VIROLOGY 78(2):899-911
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490235461 2004 JOURNAL OF VIROLOGY 78(11):5784-5798
Baillie GJ; van de Lagemaat LN; Baust C; Mager DL
Multiple groups of endogenous betaretroviruses in mice, rats, and other mammals
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4911135462 2004 LIFE SCIENCES 74(12):1445-1463
Pennefather JN; Lecci A; Candenas ML; Patak E; Pinto FM; Maggi CA
Tachykinins and tachykinin receptors: a growing family
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492130463 2004 MAMMALIAN GENOME 15(1):35-40
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493133464 2004 MAMMALIAN GENOME 15(2):126-134
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495141466 2004 MAMMALIAN GENOME 15(7):515-524
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Genetic analysis of X-linked hybrid sterility in the house mouse
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496145467 2004 MOLECULAR AND CELLULAR BIOLOGY 24(4):1640-1648
Gaudet F; Rideout WM; Meissner A; Dausman J; Leonhardt H; Jaenisch R
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497242468 2004 MOLECULAR AND CELLULAR BIOLOGY 24(9):4004-4018
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499238470 2004 MOLECULAR BIOLOGY 38(1):70-77
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Prediction and computer analysis of the exon-intron structure of human genes
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