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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
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#LCRNCRNodes / Authors / DateLCSGCS
301115970 2003 DEVELOPMENT OF AUDITORY AND VESTIBULAR SYSTEMS 3: MOLECULAR DEVELOPMENT OF THE INNER EAR 57():45-+
Quint E; Steel KP
Use of mouse genetics for studying inner ear development
00
30215073 2003 DEVELOPMENTAL BRAIN RESEARCH 144(2):159-168
Vourc'h P; Dessay S; Mbarek O; Vedrine SM; Muh JP; Andres C
The oligodendrocyte-myelin glycoprotein gene is highly expressed during the late stages of myelination in the rat central nervous system
00
30313674 2003 DEVELOPMENTAL DYNAMICS 228(4):606-616
Yang LV; Heng HH; Wan JM; Southwood CM; Gow A; Li L
Alternative promoters and polyadenylation regulate tissue-specific expression of hemogen isoforms during hematopoiesis and spermatogenesis
00
30412575 2003 DIABETES 52(6):1551-1556
Penha-Goncalves C; Moule C; Smink LJ; Howson J; Gregory S; Rogers J; Lyons PA; Suttie JJ; Lord CJ; Peterson LB; Todd JA; Wicker LS
Identification of a structurally distinct CD101 molecule encoded in the 950-kb Idd10 region of NOD mice
00
30515676 2003 DNA AND CELL BIOLOGY 22(7):457-468
Balliet AG; Hollander MC; Fornace AJ; Hoffman B; Liebermann DA
Comparative analysis of the genetic structure and chromosomal mapping of the murine Gadd45g/CR6 gene
00
30612580 2003 DNA RESEARCH 10(6):263-275
Suzuki Y; Nakayama M
Differential profiles of genes expressed in neonatal brain of 129X1/SvJ and C57BL/6J mice: A database to aid in analyzing DNA microarrays using nonisogenic gene-targeted mice
00
30717683 2003 EAR AND HEARING 24(4):332-341
Avraham KB
Mouse models for deafness: Lessons for the human inner ear and hearing loss
00
3081786 2003 EUROPEAN JOURNAL OF SURGICAL ONCOLOGY 29(7):624-627
Rew DA
Of digital mice and men
00
30914987 2003 EUROPEAN RESPIRATORY JOURNAL 21():52S-56S
Kleeberger SR
Genetic aspects of susceptibility to air pollution
00
31014388 2003 FASEB JOURNAL 17(12):-
Rogers MS; Rohan RM; Birsner AE; D'Amato RJ
Genetic loci that control vascular endothelial growth factor-induced angiogenesis
00
#LCRNCRNodes / Authors / DateLCSGCS
31116289 2003 FASEB JOURNAL 17(13):1849-1870
Rhen T; Grissom S; Afshari C; Cidlowski JA
Dexamethasone blocks the rapid biological effects of 17 beta-estradiol in the rat uterus without antagonizing its global genomic actions
00
31214790 2003 FASEB JOURNAL 17(14):-
Blanco JG; Edick MJ; Relling MV
Etoposide induces chimeric Mll gene fusions
00
31313197 2003 GENE 319():85-97
Howard KM; Muga SJ; Zhang LW; Thigpen AE; Appling DR
Characterization of the rat cytoplasmic C-1-tetrahydrofolate synthase gene and analysis of its expression in liver regeneration and fetal development
00
31414398 2003 GENE 319():149-160
Vassetzky NS; Ten OA; Kramerov DA
B1 and related SINEs in mammalian genomes
00
31513099 2003 GENE 320():31-40
Friedli M; Guipponi M; Bertrand S; Bertrand D; Neerman-Arbez M; Scott HS; Antonarakis SE; Reymond A
Identification of a novel member of the CLIC family, CLIC6, mapping to 21q22.12
00
316129100 2003 GENE 323():189-199
Tapparel C; Reymond A; Girardet C; Guillou L; Lyle R; Lamon C; Hutter P; Antonarakis SE
The TPTE gene family: cellular expression, subcellular localization and alternative splicing
00
317154101 2003 GENES & DEVELOPMENT 17(17):2094-2107
Reynolds PA; Smolen GA; Palmer RE; Sgroi D; Yajnik V; Gerald WL; Haber DA
Identification of a DNA-binding site and transcriptional target for the EWS-WT1(+KTS) oncoprotein
00
318147102 2003 GENES & DEVELOPMENT 17(21):2664-2674
Krebs CJ; Larkins LK; Price R; Tullis KM; Miller RD; Robins DM
Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorihic liver gene expression
00
319319108 2003 GENOME BIOLOGY 4(4):-
Rossant J; Scherer SW
The mouse genome sequence - the end of the tail, or just the beginning?
00
320119110 2003 GENOME BIOLOGY 4(8):-
Dickens NJ; Ponting CP
THoR: a tool for domain discovery and curation of multiple alignments
00
#LCRNCRNodes / Authors / DateLCSGCS
321135113 2003 GENOME BIOLOGY 4(10):-
Yu JD; Farjo R; MacNee SP; Baehr W; Stambolian DE; Swaroop A
Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina
00
322229114 2003 GENOME BIOLOGY 4(12):-
Gupta BP; Sternberg PW
The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C-elegans
00
323249130 2003 GENOME RESEARCH 13(6):1190-1202
Zhang LG; Pavlovic V; Cantor CR; Kasif S
Human-mouse gene identification by comparative evidence integration and evolutionary analysis
00
324136135 2003 GENOME RESEARCH 13(6B):1366-1375
Forrest ARR; Taylor D; Grimmond S
Exploration of the cell-cycle genes found within the RIKEN FANTOM2 data set
00
325115140 2003 GENOME RESEARCH 13(6B):1501-1504
Lenhard B; Wahlestedt C; Wasserman WW
GeneLynx Mouse: Integrated portal to the mouse genome
00
32614144 2003 GENOME RESEARCH 13(6B):1552-1553
Batalov S; Fletcher CF
Exon structure analysis, ortholog identification, and SNP candidate screening by mapping mouse RIKEN sequences to multiple genome assemblies
00
327133146 2003 GENOME RESEARCH 13(7):1765-1774
Khambata-Ford S; Liu YY; Gleason C; Dickson M; Altman RB; Batzoglou S; Myers RM
Identification of promoter regions in the human genome by using a retroviral plasmid library-based functional reporter gene assay
00
328151149 2003 GENOME RESEARCH 13(9):2069-2081
Mortlock DP; Guenther C; Kingsley DM
A general approach for identifying distant regulatory elements applied to the Gdf6 gene
00
329144151 2003 GENOME RESEARCH 13(9):2129-2141
Thomas PD; Campbell MJ; Kejariwal A; Mi HY; Karlak B; Daverman R; Diemer K; Muruganujan A; Narechania A
PANTHER: A library of protein families and subfamilies indexed by function
00
330155156 2003 GENOME RESEARCH 13(12):2609-2620
Sousa-Nunes R; Rana AA; Kettleborough R; Brickman JM; Clements M; Forrest A; Grimmond S; Avner P; Smith JC; Dunwoodie SL
Characterizing embryonic gene expression patterns in the mouse using nonredundant sequence-based selection
00
#LCRNCRNodes / Authors / DateLCSGCS
331119159 2003 GENOME RESEARCH 13(12):2686-2690
Mata J; Bahler J
Correlations between gene expression and gene conservation in fission yeast
00
332253160 2003 GENOME RESEARCH 13(12):2747-2753
Clark MS; Edwards YJK; Peterson D; Clifton SW; Thompson AJ; Sasaki M; Suzuki Y; Kikuchi K; Watabe S; Kawakami K; Sugano S; Elgar G; Johnson SL
Fugu ESTs: New resources for transcription analysis and genome annotation
00
333129161 2003 GENOMICS 81(5):519-524
Barrans JD; Ip J; Lam CW; Hwang IL; Dzau VJ; Liew CC
Chromosomal distribution of the human cardiovascular transcriptome
00
334136164 2003 GENOMICS 82(4):452-459
Buchner DA; Trudeau M; George AL; Sprunger LK; Meisler MH
High-resolution mapping of the sodium channel modifier Scnm1 on mouse chromosome 3 and identification of a 1.3-kb recombination hot spot
00
335127165 2003 GENOMICS 82(5):553-560
Lang D; Brown CB; Milewski R; Jiang YQ; Lu MM; Epstein JA
Distinct enhancers regulate neural expression of Pax7
00
336136166 2003 GENOMICS 82(6):637-643
Grozdanov P; Georgiev O; Karagyozov L
Complete sequence of the 45-kb mouse ribosomal DNA repeat: analysis of the intergenic spacer
00
337129167 2003 HERALD OF THE RUSSIAN ACADEMY OF SCIENCES 73(3):262-269
Sverdlov ED
DNA in a cell: From a molecular icon to the problem of "what is life?"
00
33828168 2003 HEREDITY 90(2):115-116
Hughes AL
Comparative genomics - Genomes of mice and men
00
33935169 2003 HEREDITY 91(6):533-534
Furlong RF; Yang ZH
Comparative genomics - Comparative genomics coming of age
00
340169170 2003 HORMONE RESEARCH 60():103-112
Kopchick JJ
History and future of growth hormone research
00
#LCRNCRNodes / Authors / DateLCSGCS
341151174 2003 HUMAN MOLECULAR GENETICS 12(11):1301-1312
Semenova E; Wang XF; Jablonski MM; Levorse J; Tilghman SM
An engineered 800 kilobase deletion of Uchl3 and Lmo7 on mouse chromosome 14 causes defects in viability, postnatal growth and degeneration of muscle and retina
00
342144176 2003 HUMAN MOLECULAR GENETICS 12(17):2109-2120
Peters T; Thaete C; Wolf S; Popp A; Sedlmeier R; Grosse J; Nehls MC; Russ A; Schlueter V
A mouse model for cystinuria type I
00
343248179 2003 HUMAN MOLECULAR GENETICS 12(24):3325-3330
Sunyaev S; Kondrashov FA; Bork P; Ramensky V
Impact of selection, mutation rate and genetic drift on human genetic variation
00
344128182 2003 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 12(3):391-397
Ahn SK
A bioinformatics-based approach for the prediction and identification of novel proteins potentially involved in phosphorylation signalling pathways
00
345120184 2003 JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY 112(6):1050-1056
Ono SJ; Nakamura T; Ohbayashi M; Dawson M; Ikeda Y; Nugent AK; Toda M; Jay G
Expression profiling: Opportunities and pitfalls and impact on the study and management of allergic diseases
00
346155185 2003 JOURNAL OF APPLIED PHYSIOLOGY 94(6):2502-2509
Bogue CW
Genetic models in applied physiology - Invited review: Functional genomics in the mouse: Powerful techniques for unraveling the basis of human development and disease
00
347139186 2003 JOURNAL OF APPLIED PHYSIOLOGY 95(1):11-19
Schneider H; Patil SP; Canisius S; Gladmon EA; Schwartz AR; O'Donnell CP; Smith PL; Tankersley CG
Hypercapnic duty cycle is an intermediate physiological phenotype linked to mouse chromosome 5
00
34829187 2003 JOURNAL OF APPLIED PHYSIOLOGY 95(4):1335-1337
Bogue M
Mouse Phenome Project: understanding human biology through mouse genetics and genomics
00
349146188 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(33):30450-30457
Sakao E; Ishihara A; Horikawa K; Akiyama M; Arai M; Kato M; Seki N; Fukunaga K; Shimizu-Yabe A; Iwase K; Ohtsuka S; Sato T; Kohno Y; Shibata S; Takiguchi M
Two-peaked synchronization in day/night expression rhythms of the fibrinogen gene cluster in the mouse liver
00
350134191 2003 JOURNAL OF BIOLOGICAL CHEMISTRY 278(50):50386-50392
Fukuda N; Ichihara M; Morinaga T; Kawai K; Hayashi H; Murakumo Y; Matsuo S; Takahashi M
Identification of a novel glial cell line-derived neurotrophic factor-inducible gene required for renal branching morphogenesis
00
#LCRNCRNodes / Authors / DateLCSGCS
351359195 2003 JOURNAL OF DENTAL RESEARCH 82(12):944-950
LeClair EE
Four reasons to consider a novel class of innate immune molecules in the oral epithelium
00
352195198 2003 JOURNAL OF MEDICAL GENETICS 40(8):553-559
Bomprezzi R; Kovanen PE; Martin R
New approaches to investigating heterogeneity in complex traits
00
353263199 2003 JOURNAL OF MOLECULAR BIOLOGY 333(1):1-20
Giuliodori S; Percudani R; Braglia P; Ferrari R; Guffanti E; Ottonello S; Dieci G
A composite upstream sequence motif potentiates tRNA gene transcription in yeast
00
354156200 2003 JOURNAL OF MOLECULAR BIOLOGY 333(5):1045-1059
Contreras-Moreira B; Johnsson PF; Bates PA
Structural context of exons in protein domains: Implications for protein modelling and design
00
355149201 2003 JOURNAL OF MOLECULAR EVOLUTION 57(3):325-334
Niu DK; Lin K; Zhang DY
Strand compositional asymmetries of nuclear DNA in eukaryotes
00
356457206 2003 MAMMALIAN GENOME 14(7):429-436
Pennacchio LA
Insights from human/mouse genome comparisons
00
357138207 2003 MAMMALIAN GENOME 14(8):526-536
Hansson CM; Ali H; Bruder CEG; Fransson I; Kluge S; Andersson B; Roe BA; Menzel U; Dumanski JP
Strong conservation of the human NF2 locus based on sequence comparison in five species
00
358219209 2003 MAMMALIAN GENOME 14(10):673-678
Thomas JW; Green ED
Comparative sequence analysis of a single-gene conserved segment in mouse and human
00
359139210 2003 MAMMALIAN GENOME 14(10):679-691
Laukaitis CM; Dlouhy SR; Karn RC
The mouse salivary androgen-binding protein (ABP) gene cluster on chromosomes 7: characterization and evolutionary relationships
00
360140212 2003 MAMMALIAN GENOME 14(12):859-865
Chen YJ; Yu P; Luo JC; Jiang Y
Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT
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#LCRNCRNodes / Authors / DateLCSGCS
361114214 2003 MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2003, PT 2 2879():878-885
Hamarneh G; Chen J; Neiman B; Henderson J; Henkelman M
Segmentation, registration, and deformation analysis of 3D MR images of mice
00
362128215 2003 MEDICAL JOURNAL OF AUSTRALIA 179(4):212-216
Mattick JS
The human genome and the future of medicine
00
363131217 2003 MOLECULAR AND CELLULAR BIOLOGY 23(11):3982-3989
Schwenk F; Zevnik B; Bruning J; Rohl M; Willuweit A; Rode A; Hennek T; Kauselmann G; Jaenisch R; Kuhn R
Hybrid embryonic stem cell-derived tetraploid mice show apparently normal morphological, physiological, and neurological characteristics
00
364150218 2003 MOLECULAR AND CELLULAR BIOLOGY 23(21):7648-7657
Adhikary S; Peukert K; Karsunky H; Beuger V; Lutz W; Elsasser HP; Moroy T; Eilers M
Miz1 is required for early embryonic development during gastrulation
00
365139225 2003 MOLECULAR GENETICS AND GENOMICS 270(2):173-180
Sarkar A; Sim C; Hong YS; Hogan JR; Fraser MJ; Robertson HM; Collins FH
Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences
00
366210237 2003 NATURE BIOTECHNOLOGY 21(1):31-32
Sands AT
The master mammal
00
367110239 2003 NATURE GENETICS 33(1):3-4
O'Brien T; Woychik R
Our small relative
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36824243 2003 NATURE REVIEWS GENETICS 4(1):4-5
Gunter C
Mouse genome - The mighty mouse
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369639251 2003 NATURE REVIEWS GENETICS 4(9):741-749
Wang J; Li ST; Zhang Y; Zheng HK; Xu Z; Ye J; Yu J; Wong GKS
Vertebrate gene predictions and the problem of large genes
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370123259 2003 NUCLEIC ACIDS RESEARCH 31(13):3540-3545
Solovyev VV; Shahmuradov IA
PromH: promoters identification using orthologous genomic sequences
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#LCRNCRNodes / Authors / DateLCSGCS
371137260 2003 NUCLEIC ACIDS RESEARCH 31(13):3554-3559
Halees AS; Leyfer D; Weng ZP
PromoSer: a large-scale mammalian promoter and transcription start site identification service
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372127262 2003 NUCLEIC ACIDS RESEARCH 31(15):4490-4496
Matsuyama T; Kimura MT; Koike K; Abe T; Nakano T; Asami T; Ebisuzaki T; Held WA; Yoshida S; Nagase H
Global methylation screening in the Arabidopsis thaliana and Mus musculus genome: applications of virtual image restriction landmark genomic scanning (Vi-RLGS)
00
373134265 2003 NUCLEIC ACIDS RESEARCH 31(21):6096-6103
de Bono B; Chothia C
Exegesis: a procedure to improve gene predictions and its use to find immunoglobulin superfamily proteins in the human and mouse genomes
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374220266 2003 NUCLEIC ACIDS RESEARCH 31(23):6935-6941
Gotea V; Veeramachaneni V; Makalowski W
Mastering seeds for genomic size nucleotide BLAST searches
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375144267 2003 NUCLEIC ACIDS RESEARCH 31(24):7271-7279
Moore JE; Lake JA
Gene structure prediction in syntenic DNA segments
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376140268 2003 NUTRITION REVIEWS 61(7):255-258
Lamprecht SA
Mouse models of gastrointestinal tumorigenesis for dietary cancer prevention studies
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377834269 2003 PHARMACOGENOMICS 4(5):571-582
Cheng JF; Pennacchio LA
Comparative and functional analysis of cardiovascular-related genes
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378136274 2003 PHYSIOLOGICAL GENOMICS 15(3):236-242
Woo DDL; Kurtz I
Mapping blood pressure loci in (A/J x B6) F2 mice
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379174275 2003 PHYSIOLOGICAL GENOMICS 16(1):90-98
Schwartz F; Duka A; Triantafyllidi E; Johns C; Duka I; Cui J; Gavras H
Serial analysis of gene expression in mouse kidney following angiotensin II administration
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380156277 2003 PIGMENT CELL RESEARCH 16(6):685-692
Regales L; Giraldo P; Garcia-DIaz A; Lavado A; Montoliu L
Identification and functional validation of a 5 ' upstream regulatory sequence in the human tyrosinase gene homologous to the locus control region of the mouse tyrosinase gene
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#LCRNCRNodes / Authors / DateLCSGCS
381933279 2003 PLOS BIOLOGY 1(2):156-160
Hardison RC
Comparative genomics
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382247282 2003 PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES 79(2):34-50
Yoshida T; Yoshimura K
Outline of disease gene hunting approaches in the Millennium Genome Project of Japan
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383230297 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15754-15757
Hughes AL; Packer B; Welch R; Bergen AW; Chanock SJ; Yeager M
Widespread purifying selection at polymorphic sites in human protein-coding loci
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384158300 2003 PROTEIN ENGINEERING 16(12):881-888
Bhaduri A; Sowdhamini R
A genome-wide survey of human tyrosine phosphatases
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3851104301 2003 RUSSIAN JOURNAL OF GENETICS 39(9):973-985
Makeeva NV; Pestova AA; Borodina TA; Madera DA; Ivanov DV; Stepanova EV; Baranova AV
Theoretical and applied aspects of comparative genomics of vertebrates
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38636303 2003 SCIENCE 299(5611):1331-1333
Gibbs RA; Nelson DL
Primate shadow play
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38756309 2003 SCIENCE 302(5647):997-+
Johnston M; Stormo GD
Heirlooms in the attic
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388130311 2003 SEMINARS IN IMMUNOLOGY 15(4):233-238
de Bono B; Trowsdale J
Exploring the immunogenome with bioinformatics
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38919312 2003 TRANSGENIC RESEARCH 12(6):739-741
Rani PU; Khillan JS
A simple and convenient method for preparing chimeric animals from embryonic stem (ES) cells
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390160319 2003 TRENDS IN GENETICS 19(9):505-513
Steward RE; MacArthur MW; Laskowski RA; Thornton JM
Molecular basis of inherited diseases: a structural perspective
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#LCRNCRNodes / Authors / DateLCSGCS
391116323 2003 TRENDS IN GENETICS 19(12):678-681
Gao LZ; Zhang JZ
Why are some human disease-associated mutations fixed in mice?
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392115324 2003 TRENDS IN MICROBIOLOGY 11(4):150-151
Gordon JI; Stappenbeck TS; Hooper LV
Response from Jeffrey I. Gordon et al.: Commensal bacteria make a difference
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39316326 2003 TRENDS IN PHARMACOLOGICAL SCIENCES 24(5):212-213
Haystead TAJ
Response to Petri: Can a proteornics strategy be used to identify the anti-malarial activity of chloroquine?
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3941110328 2003 ZOOLOGICAL STUDIES 42(3):391-404
Freire NP; Tennant MR; Miyamoto MM
Microarray analyses of reptiles and amphibians: Applications in ecology and evolution
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395176329 2004 ADDICTION BIOLOGY 9(1):11-18
Fan LI; Bellinger FP; Ge YL; Wilce PA
Genetic study of alcoholism and novel gene expression in the alcoholic brain
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3962101330 2004 AGEING RESEARCH REVIEWS 3(2):125-141
de Magalhaes JP; Toussaint O
How bioinformatics can help reverse engineer human aging
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397156331 2004 AMERICAN JOURNAL OF HUMAN GENETICS 74(2):197-207
Wen G; Mahata SK; Cadman P; Mahata M; Ghosh S; Mahapatra NR; Rao FW; Stridsberg M; Smith DW; Mahboubi P; Schork NJ; O'Connor DT; Hamilton BA
Both rare and common polymorphisms contribute functional variation at CHGA, a regulator of catecholamine physiology
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398150332 2004 AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY 286(3):F590-F596
Qi ZH; Whitt I; Mehta A; Jin JP; Zhao M; Harris RC; Fogo AB; Breyer MD
Serial determination of glomerular filtration rate in conscious mice using FITC-inulin clearance
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399148334 2004 ANALYTICAL CHEMISTRY 76(3):672-683
Sharp JS; Becker JM; Hettich RL
Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry
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400351335 2004 ANNUAL REVIEW OF MEDICINE 55():1-13
Austin CP
The impact of the completed human genome sequence on the development of novel therapeutics for human disease
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