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Initial sequencing and comparative analysis of the mouse genome
R.H. Waterston et al.
NATURE
420 (6915): 520-562 DEC 5 2002
and the citing papers

Nodes: 549
Authors: 2932, Journals: 196, Outer References: 18463
Collection span: 2002 - 2004
View: Overview. Sorted by GCS.
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#LCRNCRNodes / Authors / DateLCSGCS
10112647 2003 CURRENT BIOLOGY 13(17):1518-1523
Lynch C; Tristem M
A co-opted gypsy-type LTR-retrotransposon is conserved in the genomes of humans, sheep, mice, and rats
03
10213449 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(1):14-19
Mao JH; Balmain A
Genomic approaches to identification of tumour-susceptibility genes using mouse models
03
10317369 2003 DEVELOPMENT GENES AND EVOLUTION 213(5-6):291-302
Chiba S; Awazu S; Itoh M; Chin-Bow ST; Satoh N; Satou Y; Hastings KEM
A genomewide survey of developmentally relevant genes in Ciona intestinalis - IX. Genes for muscle structural proteins
03
10413194 2003 GENE 310():215-220
Costas J; Casares F; Vieira J
Turnover of binding sites for transcription factors involved in early Drosophila development
13
105178106 2003 GENETICS 163(4):1227-1235
Paigen K
One hundred years of mouse genetics: An intellectual history. II. The molecular revolution (1981-2002) (Reprinted from The New Yorker, 2003)
23
106137136 2003 GENOME RESEARCH 13(6B):1455-1465
Miki H; Setou M; Hirokawa N
Kinesin superfamily proteins (KIFs) in the mouse transcriptome
03
107110138 2003 GENOME RESEARCH 13(6B):1478-1487
Furuno M; Kasukawa T; Saito R; Adachi J; Suzuki H; Baldarelli R; Hayashizaki Y; Okazaki Y
CDS annotation in full-length cDNA sequence
13
108114139 2003 GENOME RESEARCH 13(6B):1488-1495
Kawai J; Hayashizaki Y
DNA book
23
109134147 2003 GENOME RESEARCH 13(8):1873-1879
Wong GKS; Yang ZY; Passey DA; Kibukawa M; Paddock M; Liu CR; Bolund L; Yu J
A population threshold for functional polymorphisms
13
110328177 2003 HUMAN MOLECULAR GENETICS 12(17):2201-2208
Armengol L; Pujana MA; Cheung J; Scherer SW; Estivill X
Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements
33
#LCRNCRNodes / Authors / DateLCSGCS
111281194 2003 JOURNAL OF COMPUTATIONAL BIOLOGY 10(3-4):453-482
Durand D; Sankoff D
Tests for gene clustering
03
112151205 2003 MAMMALIAN GENOME 14(5):302-313
Reed DR; Li X; McDaniel AH; Lu K; Li SR; Tordoff MG; Price RA; Bachmanov AA
Loci on Chromosomes 2, 4, 9, and 16 for body weight, body length, and adiposity identified in a genome scan of an F-2 intercross between the 129P3/J and C57BU6ByJ mouse strains
03
113165208 2003 MAMMALIAN GENOME 14(8):565-579
Tuggle CK; Green JA; Fitzsimmons C; Woods R; Prather RS; Malchenko S; Soares MB; Kucaba T; Crouch K; Smith C; Tack D; Robinson N; O'Leary B; Scheetz T; Casavant T; Pomp D; Edeal JB; Zhang YD; Rothschild MF; Garwood K; Beavis W
EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human
13
114174213 2003 MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING 41(3):271-282
Kallos MS; Sen A; Behie LA
Large-scale expansion of mammalian neural stem cells: a review
03
115236219 2003 MOLECULAR AND CELLULAR BIOLOGY 23(24):9189-9207
Horie K; Yusa K; Yae K; Odajima J; Fischer SEJ; Keng VW; Hayakawa T; Mizuno S; Kondoh G; Ijiri T; Matsuda Y; Plasterk RHA; Takeda J
Characterization of Sleeping Beauty transposition and its application to genetic screening in mice
23
116128224 2003 MOLECULAR GENETICS AND GENOMICS 269(5):715-722
Srinivasan J; Sinz W; Jesse T; Wiggers-Perebolte L; Jansen K; Buntjer J; van der Meulen M; Sommer RJ
An integrated physical and genetic map of the nematode Pristionchus pacificus
03
11718229 2003 NATURE 423(6935):26-28
Lee JT
Molecular biology: Complicity of gene and pseudogene
03
118133241 2003 NATURE GENETICS 35(3):221-228
Floyd JA; Gold DA; Concepcion D; Poon TH; Wang XB; Keithley E; Chen D; Ward EJ; Chinn SB; Friedman RA; Yu HT; Moriwaki K; Shiroishi T; Hamilton BA
A natural allele of Nxf1 suppresses retrovirus insertional mutations
13
119119261 2003 NUCLEIC ACIDS RESEARCH 31(13):3712-3715
Hennig S; Groth D; Lehrach H
Automated Gene Ontology annotation for anonymous sequence data
03
120136293 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12235-12240
Niimura Y; Nei M
Evolution of olfactory receptor genes in the human genome
03
#LCRNCRNodes / Authors / DateLCSGCS
121128314 2003 TRENDS IN ENDOCRINOLOGY AND METABOLISM 14(3):100-102
Insel PA
Location, location, location
03
122126320 2003 TRENDS IN GENETICS 19(10):530-536
van de Lagemaat LN; Landry JR; Mager DL; Medstrand P
Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
03
1231216327 2003 VIRUS GENES 26(3):291-316
Gifford R; Tristem M
The evolution, distribution and diversity of endogenous retroviruses
03
124521392 2004 GENOME RESEARCH 14(3):367-372
Frazer KA; Tao H; Osoegawa K; de Jong PJ; Chen XY; Doherty MF; Cox DR
Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional
33
125436396 2004 GENOME RESEARCH 14(4):493-506
Tuzun E; Bailey JA; Eichler EE
Recent segmental duplications in the working draft assembly of the brown Norway rat
33
12618483 2004 NATURE 428(6982):464-466
Abbott A
The Renaissance rat
13
127228491 2004 NATURE GENETICS 36(2):190-196
Shirane D; Sugao K; Namiki S; Tanabe M; Iino M; Hirose K
Enzymatic production of RNAi libraries from cDNAs
03
128221511 2004 NUCLEIC ACIDS RESEARCH 32():D523-D527
Akagi K; Suzuki T; Stephens RM; Jenkins NA; Copeland NG
RTCGD: retroviral tagged cancer gene database
03
129584535 2004 SCIENCE 303(5664):1626-1632
Kazazian HH
Mobile elements: Drivers of genome evolution
03
13013520 2003 BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 302(1):23-28
Saada N; Dai B; Echetebu C; Sarna SK; Palade P
Smooth muscle uses another promoter to express primarily a form of human Ca(V)1.2 L-type calcium channel different from the principal heart form
02
#LCRNCRNodes / Authors / DateLCSGCS
13114626 2003 BIOCHEMICAL SOCIETY TRANSACTIONS 31():801-805
LeClair EE
Four BPI (bactericidal/permeability-increasing protein)-like genes expressed in the mouse nasal, oral, airway and digestive epithelia
22
13232627 2003 BIOCHEMICAL SOCIETY TRANSACTIONS 31():806-809
Bingle CD; Craven CJ
Comparative analysis of the PLUNC (palate, lung and nasal epithelium clone) protein families
12
13317429 2003 BIOLOGY OF REPRODUCTION 69(5):1615-1625
Ward JO; Reinholdt LG; Hartford SA; Wilson LA; Munroe RJ; Schimenti KJ; Libby BJ; O'Brien M; Pendola JK; Eppig J; Schimenti JC
Toward the genetics of mammalian reproduction: Induction and mapping of gametogenesis mutants in mice
02
134112737 2003 CELLULAR AND MOLECULAR LIFE SCIENCES 60(8):1647-1658
Antequera F
Structure, function and evolution of CpG island promoters
12
13535654 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):617-622
Swanson WJ
Adaptive evolution of genes and gene families
02
13654755 2003 CURRENT OPINION IN GENETICS & DEVELOPMENT 13(6):623-628
Copley RR; Goodstadt L; Ponting C
Eukaryotic domain evolution inferred from genome comparisons
12
13713458 2003 CURRENT OPINION IN IMMUNOLOGY 15(3):239-245
Hoffmann R; Melchers F
A genomic view of lymphocyte development - Opinion
02
13817061 2003 CURRENT OPINION IN NEUROLOGY 16(4):451-458
Ahmad-Annuar A; Tabrizi SJ; Fisher EMC
Mouse models as a tool for understanding neurodegenerative diseases
02
13916772 2003 DEVELOPMENTAL BIOLOGY 264(2):391-406
Elms P; Siggers P; Napper D; Greenfield A; Arkell R
Zic2 is required for neural crest formation and hindbrain patterning during mouse development
02
14023679 2003 DNA RESEARCH 10(4):167-180
Okazaki N; Kikuno R; Ohara R; Inamoto S; Koseki H; Hiraoka S; Saga Y; Nagase T; Ohara O; Koga H
Prediction of the coding sequences of mouse homologues of KIAA gene: III. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries
12
#LCRNCRNodes / Authors / DateLCSGCS
141135104 2003 GENES BRAIN AND BEHAVIOR 2(4):191-200
Williams RW; Flaherty L; Threadgill DW
The math of making mutant mice
12
142148105 2003 GENETICAL RESEARCH 82(1):1-18
Silva JC; Shabalina SA; Harris DG; Spouge JL; Kondrashov AS
Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR-and L2-derived sequences within the mouse and human genomes
12
143116134 2003 GENOME RESEARCH 13(6B):1360-1365
Wells CA; Ravasi T; Sultana R; Yagi K; Carninci P; Bono H; Faulkner G; Okazaki Y; Quackenbush J; Hume DA; Lyons PA
Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage
02
144135142 2003 GENOME RESEARCH 13(6B):1520-1533
Nagashima T; Silva DG; Petrovsky N; Socha LA; Suzuki H; Saito R; Kasukawa T; Kurochkin IV; Konagaya A; Schonbach C
Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS
12
145223152 2003 GENOME RESEARCH 13(9):2164-2170
Huang XQ; Wang JM; Aluru S; Yang SP; Hillier L
PCAP: A whole-genome assembly program
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146267157 2003 GENOME RESEARCH 13(12):2621-2636
Xie T; Rowen L; Aguado B; Ahearn ME; Madan A; Qin SZ; Campbell RD; Hood L
Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse
02
147245158 2003 GENOME RESEARCH 13(12):2651-2657
Cutter AD; Payseur BA; Salcedo T; Estes AM; Good JM; Wood E; Hartl T; Maughan H; Strempel J; Wang BM; Bryan AC; Dellos M
Molecular correlates of genes exhibiting RNAi phenotypes in Caenorhabditis elegans
02
148146162 2003 GENOMICS 82(1):34-46
Deschamps S; Meyer J; Chatterjee G; Wang H; Lengyel P; Roe BA
The mouse Ifi200 gene cluster: genomic sequence, analysis, and comparison with the human HIN-200 gene cluster
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149157163 2003 GENOMICS 82(4):417-432
Rijnkels M; Elnitski L; Miller W; Rosen JM
Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins
02
1501100178 2003 HUMAN MOLECULAR GENETICS 12(22):3025-3040
Amadou C; Younger RM; Sims S; Matthews LH; Rogers J; Kumanovics A; Ziegler A; Beck S; Lindahl KF
Co-duplication of olfactory receptor and MHC class I genes in the mouse major histocompatibility complex
02
#LCRNCRNodes / Authors / DateLCSGCS
151150202 2003 JOURNAL OF NEUROSCIENCE 23(32):10214-10223
Farhadi HF; Lepage P; Forghani R; Friedman HCH; Orfali W; Jasmin L; Miller W; Hudson TJ; Peterson AC
A combinatorial network of evolutionarily conserved myelin basic protein regulatory sequences confers distinct glial-specific phenotypes
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152131203 2003 JOURNAL OF VIROLOGY 77(13):7459-7466
Landry JR; Mager DL
Functional analysis of the endogenous retroviral promoter of the human endothelin B receptor gene
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153111204 2003 LIVER TRANSPLANTATION 9(8):789-795
Tian YH; Graf R; Jochum W; Clavien PA
Arterialized partial orthotopic liver transplantation in the mouse: A new model and evaluation of the critical liver mass
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154148220 2003 MOLECULAR BIOLOGY AND EVOLUTION 20(8):1281-1289
Kitano T; Schwarz C; Nickel B; Paabo S
Gene diversity patterns at 10 X-chromosomal loci in humans and chimpanzees
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155212236 2003 NATURE 426(6965):395-396
Blaxter M
Comparative genomics - Two worms are better than one
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1561122252 2003 NATURE REVIEWS GENETICS 4(11):865-875
Long M; Betran E; Thornton K; Wang W
The origin of new genes: Glimpses from the young and old
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157213285 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(6):3025-3026
Adams MD; Sutton GG; Smith HO; Myers EW; Venter JC
The independence of our genome assemblies
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158120287 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(10):6233-6238
Wainwright MS; Rossi J; Schavocky J; Crawford S; Steinhorn D; Velentza AV; Zasadzki M; Shirinsky V; Jia YZ; Haiech J; Van Eldik LJ; Watterson DM
Protein kinase involved in lung injury susceptibility: Evidence from enzyme isoform genetic knockout and in vivo inhibitor treatment
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159129292 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(21):12147-12152
Iourgenko V; Zhang WJ; Mickanin C; Daly I; Jiang C; Hexham JM; Orth AP; Miraglia L; Meltzer J; Garza D; Chirn GW; McWhinnie E; Cohen D; Skelton J; Terry R; Yu Y; Bodian D; Buxton FP; Zhu JA; Song CZ; Labow MA
Identification of a family of cAMP response element-binding protein coactivators by genome-scale functional analysis in mammalian cells
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160167294 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(22):12660-12665
Wang J; Webb G; Cao Y; Steiner DF
Contrasting patterns of expression of transcription factors in pancreatic alpha and beta cells
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#LCRNCRNodes / Authors / DateLCSGCS
161236295 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(23):13402-13406
Keightley PD; Gaffney DJ
Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents
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162220298 2003 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 100(26):15776-15781
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Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
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163220316 2003 TRENDS IN GENETICS 19(6):306-310
Nekrutenko A; Chung WY; Li WH
An evolutionary approach reveals a high protein-coding capacity of the human genome
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164123322 2003 TRENDS IN GENETICS 19(12):674-678
Volff JN; Bouneau L; Ozouf-Costaz C; Fischer C
Diversity of retrotransposable elements in compact pufferfish genomes
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165117325 2003 TRENDS IN MOLECULAR MEDICINE 9(2):43-45
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Tag, you're hit: retroviral insertions identify genes involved in cancer
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A genomic perspective on protein tyrosine phosphatases: gene structure, pseudogenes, and genetic disease linkage
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Characterization of evolutionary rates and constraints in three mammalian genomes
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168134401 2004 GENOME RESEARCH 14(4):549-554
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Comparative analysis of amino acid repeats in rodents and humans
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169539415 2004 GENOME RESEARCH 14(4):721-732
Havlak P; Chen R; Durbin KJ; Egan A; Ren YR; Song XZ; Weinstock GM; Gibbs RA
The atlas genome assembly system
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170141436 2004 GENOMICS 83(5):802-811
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Odorant and vomeronasal receptor genes in two mouse genome assemblies
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1711106450 2004 JOURNAL OF IMMUNOLOGY 172(5):2731-2738
Mestas J; Hughes CCW
Of mice and not men: Differences between mouse and human immunology
02
172171479 2004 MOLECULAR ENDOCRINOLOGY 18(1):1-12
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Comparative genomic analysis of the eight-membered ring cystine knot-containing bone morphogenetic protein antagonists
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173248486 2004 NATURE 428(6982):529-535
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The DNA sequence and biology of human chromosome 19
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Domestic-animal genomics: deciphering the genetics of complex traits
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17518506 2004 NUCLEIC ACIDS RESEARCH 32():D468-D470
Birney E; Andrews D; Bevan P; Caccamo M; Cameron G; Chen Y; Clarke L; Coates G; Cox T; Cuff J; Curwen V; Cutts T; Down T; Durbin R; Eyras E; Fernandez-Suarez XM; Gane P; Gibbins B; Gilbert J; Hammond M; Hotz H; Iyer V; Kahari A; Jekosch K; Kasprzyk A; Keefe D; Keenan S; Lehvaslaiho H; McVicker G; Melsopp C; Meidl P; Mongin E; Pettett R; Potter S; Proctor G; Rae M; Searle S; Slater G; Smedley D; Smith J; Spooner W; Stabenau A; Stalker J; Storey R; Ureta-Vidal A; Woodwark C; Clamp M; Hubbard T
Ensembl 2004
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The Mouse Genome Database (MGD): integrating biology with the genome
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177228513 2004 NUCLEIC ACIDS RESEARCH 32():D568-D571
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178157523 2004 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 101(6):1748-1753
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The gene for soluble N-ethylmaleimide sensitive factor attachment protein alpha is mutated in hydrocephaly with hop gait (hyh) mice
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The Anopheles gambiae genome: an update
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Multispecies comparison of the casein gene loci and evolution of casein gene family
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18117213 2003 ANNALS ACADEMY OF MEDICINE SINGAPORE 32(2):169-175
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Chemoprevention of colorectal cancer - Experimental approach and clinical applications
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18215514 2003 ANTIVIRAL RESEARCH 59(3):181-191
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Mitochondrial proteomics - Undercover in the lipid bilayer
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Toward an animal model for antisocial behavior: parallels between mice and humans
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Plans for HDBase - a research community website for Huntington's disease
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18913844 2003 COMPARATIVE MEDICINE 53(2):119-125
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Mouse nomenclature and maintenance of genetically engineered mice
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Quantitative polymerase chain reaction-based assay for estimating DNA yield extracted from domestic cat specimens
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19112148 2003 CURRENT BIOLOGY 13(24):2206-2211
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The Ro autoantigen binds misfolded U2 small nuclear RNAs and assists mammalian cell survival after UV irradiation
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Cooper GM; Sidow A
Genomic regulatory regions: insights from comparative sequence analysis
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Mobile elements and mammalian genome evolution
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Genome comparisons and analysis
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19522778 2003 DNA RESEARCH 10(3):129-136
Hara Y; Shimada I; Kohga H; Ohara O; Koga H
High-throughput production of recombinant antigens for mouse KIAA proteins in Escherichia coli: Computational allocation of possible antigenic regions, and construction of expression plasmids of glutathione-S-transferase-fused antigens by an in vitro recombination-assisted method
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19616581 2003 DRUG METABOLISM AND DISPOSITION 31(12):1532-1540
Johnson EF
The 2002 Bernard B. Brodie Award Lecture - Deciphering substrate recognition by drug-metabolizing cytochromes P450
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19712282 2003 DRUG NEWS & PERSPECTIVES 16(4):217-221
Gant TW
Application of toxicogenomics in drug development
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19815891 2003 FOOD TECHNOLOGY 57(4):60-67
Fogg-Johnson N; Kaput J
Nutrigenomics: An emerging scientific discipline
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19913593 2003 GENE 310():17-28
Shimizu H; Taniguchi H; Hippo Y; Hayashizaki Y; Aburatani H; Ishikawa T
Characterization of the mouse Abcc12 gene and its transcript encoding an ATP-binding cassette transporter, an orthologue of human ABCC12
01
20013995 2003 GENE 312():61-72
Zhang ZL; Gerstein M
The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse
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