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Mon Jul 31 15:56:18 2006

Hillier LW, Miller W, Birney E, et al.
Sequence and comparative analysis of the chicken genome
provide unique perspectives on vertebrate evolution
NATURE 432 (7018): 695-716 DEC 9 2004
and the citing papers
Nodes: 203, Authors: 1483, Journals: 94, Outer References: 8307, Words: 911
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Collection span: 2004 - 2006
View: Overview   Sorted by GCS.

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#LCRNCRNode / Date / Journal / AuthorLCSGCS
1011399 2005 ANIMAL GENETICS 36 (5): 401-407
Beaumont C; Roussot O; Feve K; Vignoles F; Leroux S; et al.
A genome scan with AFLP((TM)) markers to detect fearfulness-related QTLs in Japanese quail
00
1021410 2005 ANIMAL GENETICS 36 (5): 438-443
Reed KM
In silico comparative mapping of 278 genomic survey sequences from the turkey (Meleagris gallopavo)
00
10314211 2005 ANIMAL GENETICS 36 (6): 468-476
Rabie TSKM; Crooijmans RPMA; Bovenhuis H; Vereijken ALJ; Veenendaal T; et al.
Genetic mapping of quantitative trait loci affecting susceptibility in chicken to develop pulmonary hypertension syndrome
00
10418615 2005 AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE 45 (7-8): 749-756
Moore RJ; Doran TJ; Wise TG; Riddell S; Granger K; et al.
Chicken functional genomics: an overview
00
10513316 2005 AVIAN PATHOLOGY 34 (4): 324-331
Zhang HM; Bacon LD; Cheng HH; Hunt HD
Development and validation of a PCR-RFLP assay to evaluate TVB haplotypes coding receptors for subgroup B and subgroup E avian leukosis viruses in White Leghorns
00
10612317 2005 BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS 1734 (2): 136-142
Matsuyama H; Sato K; Nakamura Y; Suzuki K; Akiba Y
Modulation of regulatory factors involved in cholesterol metabolism in response to feeding of pravastatin-or cholesterol-supplemented diet in chickens
00
10714921 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 40
Laukaitis CM; Dlouhy SR; Emes RD; Ponting CP; Karn RC
Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus
00
10815522 2005 BMC EVOLUTIONARY BIOLOGY 5: Art. No. 54
Winter EE; Ponting CP
Mammalian BEX, WEX and GASP genes: Coding and non-coding chimaerism sustained by gene conversion events
00
10933825 2005 BMC GENOMICS 6: Art. No. 167
Kaiserman D; Bird PI
Analysis of vertebrate genomes suggests a new model for clade B serpin evolution
00
11034831 2005 CHROMOSOME RESEARCH 13 (6): 581-591
Rodrigue KL; May BP; Famula TR; Delany ME
Meiotic instability of chicken ultra-long telomeres and mapping of a 2.8 megabase array to the W-sex chromosome
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
11113133 2005 CHROMOSOME RESEARCH 13 (7): 665-673
Coullin P; Bed'Hom B; Candelier JJ; Vettese D; Maucolin S; et al.
Cytogenetic repartition of chicken CR1 sequences evidenced by PRINS in Galliformes and some other birds
00
11222335 2005 COMPARATIVE AND FUNCTIONAL GENOMICS 6 (5-6): 301-306
Hartman S; Touchton G; Wynn J; Geng T; Chong NW; et al.
Characterization of expressed sequence tags from a Gallus gallus pineal gland cDNA library
00
113212836 2005 CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY 40 (6): 313-330
Khil PR; Camerini-Otero RD
Molecular features and functional constraints in the evolution of the mammalian X chromosome
00
11414337 2005 CURRENT GENOMICS 6 (2): 75-80
Smith EJ; Kamara D; Pimentel G; Geng T; Guan X; et al.
Avian genomes: Important resources for understanding vertebrate biology
00
1151347 2005 FEBS JOURNAL 272: 117-117
Antonarakis SE
The mystery of conserved non-genic (CNG) sequences
00
11617749 2005 GENE 359: 1-17
Edelstein LC; Collins T
The SCAN domain family of zinc finger transcription
00
11711450 2005 GENE 362: 117-124
Benkel BF; Nguyen T; Uno Y; de Leon FAP; Hickey DA
Structural organization and chromosomal location of the chicken alpha-amylase gene family
00
11813653 2005 GENETICS 171 (3): 1173-1181
Heifetz EM; Fulton JE; O'Sullivan N; Zhao H; Dekkers JCM; et al.
Extent and consistency across generations of linkage disequilibrium in commercial layer chicken breeding populations
00
11911555 2005 GENOME BIOLOGY 6 (2): Art. No. 207
Furlong RF
Insights into vertebrate evolution from the chicken genome sequence
00
12013956 2005 GENOME BIOLOGY 6 (7): Art. No. 115
Aloni R; Lancet D
Conservation anchors in the vertebrate genome
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
121106061 2005 GENOME RESEARCH 15 (12): 1692-1698
Burt DW
Chicken genome: Current status and future opportunities
00
12216063 2005 GENOME RESEARCH 15 (12): 1787-1797
Webber C; Ponting CP
Hotspots of mutation and breakage in dog and human chromosomes
00
12316765 2005 GENOMICS 86 (6): 731-738
Liu WS; Eyer K; Yasue H; Roelofs B; Hiraiwa H; et al.
A 12,000-rad porcine radiation hybrid (IMNpRH2) panel refines the conserved synteny between SSC12 and HSA17
00
12419367 2005 GROWTH FACTORS 23 (4): 263-272
Clump DA; Qazi IH; Sudol M; Flynn DC
c-Yes response to growth factor activation
00
1251568 2005 HEREDITY 94 (6): 567-568
Jensen P
Genomics - The chicken genome sequence
00
12626370 2005 IMMUNOGENETICS 57 (8): 590-600
Maruoka T; Tanabe H; Chiba M; Kasahara M
Chicken CD1 genes are located in the MHC: CD1 and endothelial protein C receptor genes constitute a distinct subfamily of class-I-like genes that predates the emergence of mammals
00
12714476 2005 JOURNAL OF IMMUNOLOGY 175 (3): 1724-1734
Oshiumi H; Shida K; Goitsuka R; Kimura Y; Katoh J; et al.
Regulator of complement activation (RCA) locus in chicken: Identification of chicken RCA gene cluster and functional RCA proteins
00
12813380 2005 JOURNAL OF VIROLOGY 79 (18): 12035-12044
Barr SD; Leipzig J; Shinn P; Ecker JR; Bushman FD
Integration targeting by avian sarcoma-leukosis virus and human immunodeficiency virus in the chicken genome
00
1291184 2005 NATURE 433 (7027): 777-777
[Anon]
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution (vol 432, pg 695, 2004)
00
13021492 2005 NATURE GENETICS 37 (10): 1041-1043
Itoh T; Toyoda A; Taylor TD; Sakaki Y; Hattori M
Identification of large ancient duplications associated with human gene deserts
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
1311493 2005 NATURE REVIEWS GENETICS 6 (1): 4-5
Gunter C
Genomics - Pecking away at evolution
00
13211898 2005 PERIODICUM BIOLOGORUM 107 (4): 379-383
Juretic D; Lucic B; Trinajstic N
Why focusing on bioinformatics?
00
13311799 2005 PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 360 (1459): 1365-1366
Charlesworth B; Keightley P; Visscher P
Introduction: Population genetics, quantitative genetics and animal improvement: papers in honour of William (Bill) Hill
00
134138100 2005 PLANT PHYSIOLOGY 138 (3): 1301-1309
Schoof H; Spannagl M; Yang L; Ernst R; Gundlach H; et al.
Munich Information Center for Protein Sequences plant genome resources. A framework for integrative and comparative analyses
00
135153101 2005 POULTRY SCIENCE 84 (11): 1678-1688
McElroy JP; Dekkers JCM; Fulton JE; O'Sullivan NP; Soller M; et al.
Microsatellite markers associated with resistance to Marek's disease in commercial layer chickens
00
136284110 2005 PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 272 (1578): 2289-2298
Hansson B; Akesson M; Slate J; Pemberton JM
Linkage mapping reveals sex-dimorphic map distances in a passerine bird
00
137153113 2005 RUSSIAN JOURNAL OF GENETICS 41 (5): 461-467
Sazanov AA; Romanov MN; Smirnov AF
Libraries of large-insert genomic clones as a tool for molecular cytogenetic analysis of avian genome
00
138114114 2005 TRENDS IN BIOTECHNOLOGY 23 (6): 269-271
Taylor J
Clues to function in gene deserts
00
139211121 2006 ANIMAL BIOTECHNOLOGY 17 (1): 73-80
Reed KM; Hall MK; Chaves LD; Knutson TP
Single nucleotide polymorphisms for integrative mapping in the Turkey (Meleagris gallopavo)
00
14025122 2006 ANIMAL GENETICS 37 (1): 84-84
Reed KM; Mendoza KM
Assignment of turkey linkage group M22 to the comparative turkey/chicken map
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
141124123 2006 ANIMAL GENETICS 37 (2): 95-100
Nones K; Ledur MC; Ruy DC; Baron EE; Melo CMR; et al.
Mapping QTLs on chicken chromosome 1 for performance and carcass traits in a broiler x layer cross
00
142217124 2006 ANIMAL GENETICS 37 (2): 130-138
Chaves LD; Knutson TP; Krueth SB; Reed KM
Using the chicken genome sequence in the development and mapping of genetic markers in the turkey (Meleagris gallopavo)
00
143138125 2006 BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY 70 (6): 1438-1446
Morshed M; Sano S; Nishimiya D; Ando M; Nishijima K; et al.
Chicken ovalbumin promoter is demethylated upon expression in the regions specifically involved in estrogen-responsiveness
00
144149126 2006 BMC BIOINFORMATICS 7: Art. No. 103
Shih ACC; Lee DT; Lin L; Peng CL; Chen SH; et al.
SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools
00
145130127 2006 BMC EVOLUTIONARY BIOLOGY 6: Art. No. 5
Danchin EGJ; Gouret P; Pontarotti P
Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals
00
146191129 2006 BMC GENOMICS 7: Art. No. 20
Steinke D; Salzburger W; Braasch I; Meyer A
Many genes in fish have species-specific asymmetric rates of molecular evolution
00
147128130 2006 BMC GENOMICS 7: Art. No. 49
Smith J; Speed D; Hocking PM; Talbot RT; Degen WGJ; et al.
Development of a chicken 5 K microarray targeted towards immune function
00
1481110131 2006 BMC GENOMICS 7: Art. No. 83
Chakravarti R; Adams JC
Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates
00
149275132 2006 BMC NEUROSCIENCE 7: Art. No. 12
Scholz B; Kultima K; Mattsson A; Axelsson J; Brunstrom B; et al.
Sex-dependent gene expression in early brain development of chicken embryos
00
150137133 2006 CANCER RESEARCH 66 (1): 78-86
Pajer P; Pecenka V; Kralova J; Karafiat V; Prukova D; et al.
Identification of potential human oncogenes by mapping the common viral integration sites in avian nephroblastoma
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
151245134 2006 CELL AND TISSUE RESEARCH 324 (1): 41-53
Mozdziak PE; Wu Q; Bradford JM; Pardue SL; Borwornpinyo S; et al.
Identification of the lacZ insertion site and beta-galactosidase expression in transgenic chickens
00
1521105135 2006 CELLULAR AND MOLECULAR LIFE SCIENCES 63 (10): 1125-1140
Cruciani V; Mikalsen SO
The vertebrate connexin family
00
153259136 2006 CHROMOSOME RESEARCH 14 (2): 187-202
Kuraku S; Ishijima J; Nishida-Umehara C; Agata K; Kuratani S; et al.
cDNA-based gene mapping and GC(3) profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids
00
1541223138 2006 CURRENT DRUG METABOLISM 7 (4): 349-365
Reschly EJ; Krasowski MD
Evolution and function of the NR1I nuclear hormone receptor subfamily (VDR, PXR, and CAR) with respect to metabolism of xenobiotics and endogenous compounds
00
155351139 2006 CURRENT OPINION IN GENETICS & DEVELOPMENT 16 (3): 213-218
Ross MT; Bentley DR; Tyler-Smith C
The sequences of the human sex chromosomes
00
156233140 2006 CYTOGENETIC AND GENOME RESEARCH 112 (3-4): 286-295
Nanda I; Karl E; Volobouev V; Griffin DK; Schartl M; et al.
Extensive gross genomic rearrangements between chicken and Old World vultures (Falconiformes : Accipitridae)
00
157153141 2006 CYTOGENETIC AND GENOME RESEARCH 113 (1-4): 159-164
Okamura K; Ito T
Lessons from comparative analysis of species-specific imprinted genes
00
158145142 2006 DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 30 (1-2): 93-100
Lundqvist ML; Middleton DL; Radford C; Warr GW; Magor KE
Immunoglobulins of the non-galliform birds: Antibody expression and repertoire in the duck
00
159136143 2006 DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 30 (7): 659-666
Siwek M; Buitenhuis B; Cornelissen S; Nieuwland M; Knol EF; et al.
Detection of QTL for innate: Non-specific antibody levels binding LPS and LTA in two independent populations of laying hens
00
160238144 2006 DEVELOPMENTAL BIOLOGY 294 (2): 554-563
Das RM; Van Hateren NJ; Howell GR; Farrell ER; Bangs FK; et al.
A robust system for RNA interference in the chicken using a modified microRNA operon
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
161138146 2006 FEBS JOURNAL 273 (3): 523-535
Villarreal L; Tio L; Capdevila M; Atrian S
Comparative metal binding and genomic analysis of the avian (chicken) and mammalian metallothionein
00
162136147 2006 FEBS JOURNAL 273 (8): 1637-1648
Gao F; Zhang CT
Isochore structures in the chicken genome
00
163128148 2006 FEBS LETTERS 580 (5): 1277-1284
Wang Y; Leung FCC
Long inverted repeats in eukaryotic genomes: Recombinogenic motifs determine genomic plasticity
00
164126149 2006 FEBS LETTERS 580 (15): 3610-3616
Xu HT; Wang XB; Du ZL; Li N
Identification of microRNAs from different tissues of chicken embryo and adult chicken
00
165142150 2006 FOOD CHEMISTRY 99 (4): 702-710
Raikos V; Hansen R; Campbell L; Euston SR
Separation and identification of hen egg protein isoforms using SDS-PAGE and 2D gel electrophoresis with MALDI-TOF mass spectrometry
00
166169151 2006 GENE 365: 57-66
Watanabe M; Nikaido M; Tsuda TT; Inoko H; Mindell DP; et al.
The rise and fall of the CR1 subfamily in the lineage leading to penguins
00
167122152 2006 GENE 365: 83-87
Hokii Y; Kubo A; Ogasawara T; Nogi Y; Taneda A; et al.
Twelve novel C-elegans RNA candidates isolated by two-dimensional polyacrylamide gel electrophoresis
00
168142153 2006 GENE 365: 130-136
Noda AO; Ikeo K; Gojobori T
Comparative genome analyses of nervous system-specific genes
00
169240154 2006 GENE 368: 37-45
Padhi BK; Akimenko MA; Ekker M
Independent expansion of the keratin gene family in teleostean fish and mammals: An insight from phylogenetic analysis and radiation hybrid mapping of keratin genes in zebrafish
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170124155 2006 GENE 372: 26-32
Diaz-Gil G; Gomez-Esquer F; Agudo D; Delcan J; Martinez-Arribas F; et al.
Characterization of a human Bid homologue protein from Gallus gallus
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
171123156 2006 GENE 373: 44-51
MacLea KS; Cheng HH
Cloning and expression of deoxyribonuclease II1 from chicken
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172141157 2006 GENES & DEVELOPMENT 20 (10): 1365-1377
Davey MG; Paton IR; Yin Y; Schmidt M; Bangs FK; et al.
The chicken talpid(3) gene encodes a novel protein essential for Hedgehog signaling
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173165158 2006 GENES CHROMOSOMES & CANCER 45 (7): 676-691
Angeloni D; ter Elst A; Wei MH; van der Veen AY; Braga EA; et al.
Analysis of a new homozygous deletion in the tumor suppressor region at 3p12.3 reveals two novel intronic noncoding RNA genes
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174231159 2006 GENOME BIOLOGY 7 (1): Art. No. R7
Zhi DG; Raphael BJ; Price AL; Tang HX; Pevzner PA
Identifying repeat domains in large genomes
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175164160 2006 GENOME BIOLOGY 7 (5): Art. No. R43
Blomme T; Vandepoele K; De Bodt S; Simillion C; Maere S; et al.
The gain and loss of genes during 600 million years of vertebrate evolution
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176110162 2006 GENOME RESEARCH 16 (3): 311-313
Bourque G; Tesler G; Pevzner PA
The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction
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177256163 2006 GENOME RESEARCH 16 (7): 864-874
Nishihara H; Smit AFA; Okada N
Functional noncoding sequences derived from SINEs in the mammalian genome
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178137165 2006 GENOMICS 87 (6): 801-808
Hawkins RD; Helms CA; Winston JB; Warchol ME; Lovett M
Applying genomics to the avian inner ear: Development of subtractive cDNA resources for exploring sensory function and hair cell regeneration
00
179240166 2006 IMMUNOGENETICS 58 (2-3): 180-190
Viertlboeck BC; Schmitt R; Gobel TW
The chicken immunoregulatory receptor families SIRP, TREM, and CMRF35/CD300L
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180356167 2006 IMMUNOGENETICS 58 (5-6): 362-373
Cannon JP; Haire RN; Mueller MG; Litman RT; Eason DD; et al.
Ancient divergence of a complex family of immune-type receptor genes
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#LCRNCRNode / Date / Journal / AuthorLCSGCS
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Fulton JE; Juul-Madsen HR; Ashwell CM; McCarron AM; Arthur JA; et al.
Molecular genotype identification of the Gallus gallus major histocompatibility complex
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182139169 2006 IMMUNOGENETICS 58 (5-6): 422-432
Santos MD; Yasuike M; Hirono I; Aoki T
The granulocyte colony-stimulating factors (CSF3s) of fish and chicken
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183142170 2006 INFECTION AND IMMUNITY 74 (6): 3375-3380
Hasenstein JR; Zhang GL; Lamont SJ
Analyses of five gallinacin genes and the Salmonella enterica serovar Enteritidis response in poultry
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184161171 2006 JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 54 (11): 3901-3910
Guerin-Dubiard C; Pasco M; Molle D; Desert C; Croguennec T; et al.
Proteomic analysis of hen egg white
00
185139174 2006 JOURNAL OF ELECTRON MICROSCOPY 55 (1): 31-40
Kobori T; Kodama M; Hizume K; Yoshimura SH; Ohtani T; et al.
Comparative structural biology of the genome: nano-scale imaging of single nucleus from different kingdoms reveals the common physicochemical property of chromatin with a 40 nm structural unit
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186153177 2006 JOURNAL OF MOLECULAR EVOLUTION 62 (1): 66-U36
Berlin S; Ellegren H
Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds
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187155178 2006 JOURNAL OF MOLECULAR EVOLUTION 62 (2): 226-U17
Berlin S; Brandstrom M; Backstrom N; Axelsson E; Smith NDC; et al.
Substitution rate heterogeneity and the male mutation bias
00
188192179 2006 JOURNAL OF MOLECULAR EVOLUTION 62 (5): 630-644
Piskurek O; Austin CC; Okada N
Sauria SINEs: Novel short interspersed retroposable elements that are widespread in reptile genomes
00
189163181 2006 MARINE BIOLOGY 149 (1): 107-115
Watanabe H; Iguchi T
Using ecotoxicogenomics to evaluate the impact of chemicals on aquatic organisms
00
190339184 2006 MOLECULAR BIOLOGY AND EVOLUTION 23 (5): 964-972
Go Y
Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates
00
#LCRNCRNode / Date / Journal / AuthorLCSGCS
191175185 2006 MOLECULAR BIOLOGY AND EVOLUTION 23 (6): 1203-1216
Webster MT; Axelsson E; Ellegren H
Strong regional biases in nucleotide substitution in the chicken genome
00
192655190 2006 NUCLEIC ACIDS RESEARCH 34 (9): Art. No. e65
Tran T; Havlak P; Miller J
MicroRNA enrichment among short 'ultraconserved' sequences in insects
00
193226191 2006 PHYSIOLOGICAL GENOMICS 25 (2): 216-223
Park HB; Jacobsson L; Wahlberg P; Siegel PB; Andersson L
QTL analysis of body composition and metabolic traits in an intercross between chicken lines divergently selected for growth
00
194262192 2006 PHYSIOLOGICAL GENOMICS 25 (3): 414-425
Ellestad LE; Carre W; Muchow M; Jenkins SA; Wang XF; et al.
Gene expression profiling during cellular differentiation in the embryonic pituitary gland using cDNA microarrays
00
195249193 2006 PHYSIOLOGICAL GENOMICS 25 (3): 514-524
Carre W; Wang XF; Porter TE; Nys Y; Tang JS; et al.
Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index
00
19628194 2006 POULTRY SCIENCE 85 (2): 198-199
Qureshi MA
Ancillary scientists symposium: Conservation of avian genetic resources: Current opportunities and challenges - Introduction
00
197216195 2006 POULTRY SCIENCE 85 (2): 223-226
Delany ME
Avian genetic stocks: The high and low points from an academia researcher
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198158196 2006 POULTRY SCIENCE 85 (4): 593-605
McElroy JP; Kim JJ; Harry DE; Brown SR; Dekkers JCM; et al.
Identification of trait loci affecting white meat percentage and other growth and carcass traits in commercial broiler chickens
00
199144197 2006 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 103 (5): 1434-1439
Wallny HJ; Avila D; Hunt LG; Powell TJ; Riegert P; et al.
Peptide motifs of the single dominantly expressed class I molecule explain the striking MHC-determined response to Rous sarcoma virus in chickens
00
200168199 2006 PROTEOMICS 6 (9): 2759-2771
McCarthy FM; Cooksey AM; Wang N; Bridges SM; Pharr GT; et al.
Modeling a whole organ using proteomics: The avian bursa of Fabricius
00

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