| Record 1263 View: Standard | Glossary HistCite Guide |
|
Author(s): Caporale LH
Title: Natural selection and the emergence of a mutation phenotype: An update of the evolutionary synthesis considering mechanisms that affect genome variation
Source: ANNUAL REVIEW OF MICROBIOLOGY 57: 467-485
Date: 2003
Document Type: Journal : Review
DOI:
Language: English
Comment:
Address:
Reprint: Caporale, LH, 1 Sherman Sq, New York, NY 10023 USA.
E-mail: caporale@usa.net
Author Keywords: implicit genome; Darwin; explicit genome; codon degeneracy; reversible
mutations; contingency genes
KeyWords Plus: URACIL-DNA GLYCOSYLASE; BASE EXCISION-REPAIR; DOUBLE-STRAND BREAK;
IRRADIATED ESCHERICHIA-COLI; SITE-SPECIFIC RECOMBINATION; LYME-DISEASE
SPIROCHETE; GROUP-A STREPTOCOCCUS; PHASE-VARIABLE GENES; MEIOTIC
RECOMBINATION; SACCHAROMYCES-CEREVISIAE
Abstract: Most descriptions of evolution assume that all mutations are completely random with respect to their potential effects on survival. However, much like other phenotypic variations that affect the survival of the descendants, intrinsic variations in the probability, type, and location of genetic change can feel the pressure of natural selection. From site-specific recombination to changes in polymerase fidelity and repair of DNA damage, an organism's gene products affect what genetic changes occur in its genome. Through the action of natural selection on these gene products, potentially favorable mutations can become more probable than random. With examples from variation in bacterial surface proteins to the vertebrate immune response, it is clear that a great deal of genetic change is better than "random" with respect to its potential effect on survival. Indeed, some potentially useful mutations are so probable that they can be viewed as being encoded implicitly in the genome. An updated evolutionary theory includes emergence, under selective pressure, of genomic information that affects the probability of different classes of mutation, with consequences for genome survival.
Cited References: ABDULLAH MFF, 2001, P NATL ACAD SCI USA, V98, P14524 ADLER MJ, 2001, SCIENCE, V294, P53 ANDERSON RP, 1978, J MOL BIOL, V126, P53 ARBER W, 1999, ANN NY ACAD SCI, V870, P36 BARBOUR AG, 2000, EMERG INFECT DIS, V6, P449 BARRY JD, 2001, ADV PARASIT, V49, P1 BAYLISS CD, 2001, J CLIN INVEST, V107, P657 BAYLISS CD, 2002, EMBO J, V21, P1465 BERDAL KG, 1998, EMBO J, V17, P363 BERES SB, 2002, P NATL ACAD SCI USA, V99, P10078 BLUMENTALPERRY A, 2000, EMBO REP, V1, P232 BOYD EF, 1997, J BACTERIOL, V179, P1622 BRESSON A, 2002, EMBO J, V21, P3881 BRIDGES BA, 1999, SCIENCE, V284, P62 BROWN EW, 2001, J BACTERIOL, V183, P1631 CAPORALE LH, 1984, MOL CELL BIOCHEM, V64, P5 CAPORALE LH, 1999, MOL STRATEGIES BIOL CAPORALE LH, 2000, BIOESSAYS, V22, P388 CAPORALE LH, 2002, DARWIN GENOME CASJENS S, 2000, MOL MICROBIOL, V35, P490 CHEN SH, 2001, P NATL ACAD SCI USA, V98, P13802 CHENG YL, 2001, J BACTERIOL, V183, P221 COLLIS CM, 2002, J BACTERIOL, V184, P3017 COURCELLE J, 2001, P NATL ACAD SCI USA, V98, P8196 COUZIN J, 2002, SCIENCE, V298, P2296 CROWLEY DJ, 1998, J BACTERIOL, V180, P3345 DARWIN C, 1964, ORIGIN SPECIES DAVIS L, 2001, P NATL ACAD SCI USA, V98, P8395 DEBOLLE X, 2000, MOL MICROBIOL, V35, P211 DEITSCH KW, 1997, MICROBIOL MOL BIOL R, V61, P281 DENAMUR E, 2000, CELL, V103, P711 DEVISSER JAGM, 2002, MICROBIOL-SGM 5, V148, P1247 DIAZ RL, 2002, MOL CELL BIOL, V22, P1106 DICKINSON WJ, 1999, NATURE, V399, P30 DINOIA J, 2002, NATURE, V419, P43 DOWNIE JA, 2001, NATURE, V412, P597 DUNHAM MJ, 2002, P NATL ACAD SCI USA, V99, P16144 EIGEN M, 2002, P NATL ACAD SCI USA, V99, P13374 EVOLUTION DARWIN FAILI A, 2002, NATURE, V419, P944 FINLAY BB, 1997, MICROBIOL MOL BIOL R, V61, P136 FIX DF, 1987, MOL GEN GENET, V209, P78 FIX DF, 1990, MUTAT RES, V244, P115 FLORESROZAS H, 1998, P NATL ACAD SCI USA, V95, P12404 FONDUFEMITTENDORF YN, 2002, NUCLEIC ACIDS RES, V30, P614 FOX ME, 2000, GENETICS, V156, P59 FRIEDBERG EC, 2002, SCIENCE, V296, P1627 FROSINA G, 2000, EUR J BIOCHEM, V267, P2135 FUNCHAIN P, 2000, GENETICS, V154, P959 FUNCHAIN P, 2001, J BACTERIOL, V183, P3737 FUTUYMA DJ, 1998, EVOLUTIONARY BIOL GIRAUD A, 2002, ANTIMICROB AGENTS CH, V46, P863 GLASSNER BJ, 1998, P NATL ACAD SCI USA, V95, P9997 GOODMAN MF, 1998, GENETICS, V148, P1475 GOODMAN MF, 2002, ANNU REV BIOCHEM, V71, P17 GOYENECHEA B, 1996, P NATL ACAD SCI USA, V93, P13979 GRAHAM MR, 2002, P NATL ACAD SCI USA, V99, P13855 GREENE CN, 1997, MOL CELL BIOL, V17, P2844 GROGAN DW, 1998, MOL MICROBIOL, V28, P1043 HADJIMARCOU MI, 2001, GENETICS, V158, P177 HALL RM, 1995, MOL MICROBIOL, V15, P593 HALLET B, 2001, CURR OPIN MICROBIOL, V4, P570 HAMMERSCHMIDT S, 1996, MOL MICROBIOL, V20, P1211 HENDERSON IR, 1999, MOL MICROBIOL, V33, P919 HONJO T, 2002, ANNU REV IMMUNOL, V20, P165 HUBER KE, 2002, NATURE, V417, P656 HUECK CJ, 1998, MICROBIOL MOL BIOL R, V62, P379 HUNTER N, 2001, CELL, V106, P59 JAGER J, 1999, CURR OPIN STRUC BIOL, V9, P21 JEFFREYS AJ, 2001, NAT GENET, V29, P217 KASHI Y, 1997, TRENDS GENET, V13, P74 KIM DD, 2000, MOL CELLS, V10, P367 KIM SR, 1997, P NATL ACAD SCI USA, V94, P13792 KIRKPATRICK DT, 1999, GENETICS, V152, P101 LAWRENCE JG, 1998, P NATL ACAD SCI USA, V95, P9413 LEVIN BR, 2000, P NATL ACAD SCI USA, V97, P6981 LIAO GC, 2000, P NATL ACAD SCI USA, V97, P3347 LINDAHL T, 1999, SCIENCE, V286, P1897 LUO Y, 2001, CELL, V106, P585 MAO C, 2001, J IMMUNOL, V167, P1522 MARRA G, 1999, BIOCHEM J 1, V338, P1 MATIC I, 1995, CELL, V80, P507 MATIC I, 2000, J BACTERIOL, V182, P5922 MEMISOGLU A, 2000, J BACTERIOL, V182, P2104 MERINO D, 2002, MOL MICROBIOL, V44, P877 MILLER JH, 2002, GENETICS, V162, P5 MOXON ER, 1994, CURR BIOL, V4, P24 MOXON ER, 1997, NATURE, V387, P659 NASSIF X, 1999, MOL MICROBIOL, V32, P1124 NILSEN H, 2001, CARCINOGENESIS, V22, P987 OCHMAN H, 2000, NATURE, V405, P299 OHLER U, 2001, BIOINFORMATICS S1, V17, PS199 OLIVER A, 2002, MOL MICROBIOL, V43, P1641 PACKER MJ, 2001, J AM CHEM SOC, V123, P7399 PERNA NT, 2001, NATURE, V409, P529 POTEETE AR, 2002, J BACTERIOL, V184, P3753 RICH A, 1983, COLD SPRING HARB SYM, V47, P1 RICHARDSON AR, 2002, P NATL ACAD SCI USA, V99, P6103 RIPLEY LS, 1999, ANN NY ACAD SCI, V870, P159 ROBERTSON BD, 1992, TRENDS GENET, V8, P422 ROCHA EPC, 2001, MOL BIOL EVOL, V18, P1789 ROCHA EPC, 2002, NUCLEIC ACIDS RES, V30, P1886 ROSENBERG SM, 2001, NAT REV GENET, V2, P504 ROWEMAGNUS DA, 2001, CURR OPIN MICROBIOL, V4, P565 SANDMEIER H, 1992, J BACTERIOL, V174, P3936 SANDMEIER H, 1994, MOL MICROBIOL, V12, P343 SAUNDERS NJ, 2000, MOL MICROBIOL, V37, P207 SCHEUERMANN RH, 1984, P NATL ACAD SCI USA, V81, P7747 SCHWAN TG, 1988, INFECT IMMUN, V56, P1831 SHAPIRO JA, 1998, ANNU REV MICROBIOL, V52, P81 SHAPIRO JA, 1999, GENETICA, V107, P171 SINDEN RR, 1999, ANN NY ACAD SCI, V870, P173 SNYDER LAS, 2001, MICROBIOL-SGM 8, V147, P2321 SONTI RV, 1989, GENETICS, V123, P19 STEINMOEN H, 2002, P NATL ACAD SCI USA, V99, P7681 TRIFONOV EN, 1999, ANN NY ACAD SCI, V870, P330 VANBELKUM A, 1998, MICROBIOL MOL BIOL R, V62, P275 VANBELKUM A, 1999, CELL MOL LIFE SCI, V56, P729 VANDERENDE A, 1995, J BACTERIOL, V177, P2475 VANHOUTEN B, 2002, P NATL ACAD SCI USA, V99, P2581 VOGEL U, 1999, MOL MICROBIOL, V32, P1133 WAHLS WP, 1994, GENE DEV, V8, P1693 WALLACE AR, 1905, MY LIFE MY LIFE RECO, V1 WALLACE AR, 1905, MY LIFE MY LIFE RECO, V2 WHITE O, 1999, SCIENCE, V286, P1571 WILLIAMS MV, 1990, J BACTERIOL, V172, P2979 WITKIN EM, 1976, BACTERIOL REV, V40, P869 WRIGHT BE, 2000, J BACTERIOL, V182, P2993 ZHANG JR, 1997, CELL, V89, P275 ZHANG JR, 1998, INFECT IMMUN, V66, P3698 ZHANG XL, 1995, J BIOL CHEM, V270, P8401 |