HistCite - The genome sequence of Drosophila melanogaster

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#	Date / Author / Journal	LCS	GCS	LCR	CR
1	345 Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al. The sequence of the human genome SCIENCE. 2001 FEB 16; 291 (5507): 1304-+	382	5111	7	192
2	32 Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. Gene Ontology: tool for the unification of biology NATURE GENETICS. 2000 MAY; 25 (1): 25-29	86	4332	2	33
3	199 Kaul S, Koo HL, Jenkins J, Rizzo M, Rooney T, et al. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana NATURE. 2000 DEC 14; 408 (6814): 796-815	218	3171	4	122
4	16 Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, et al. The genome sequence of Drosophila melanogaster SCIENCE. 2000 MAR 24; 287 (5461): 2185-2195	2819	2819	5	82
5	1175 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. Initial sequencing and comparative analysis of the mouse genome NATURE. 2002 DEC 5; 420 (6915): 520-562	166	2474	12	331
6	786 Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, et al. The Pfam Protein Families Database NUCLEIC ACIDS RESEARCH. 2002 JAN 1; 30 (1): 276-280	22	1376	1	17
7	908 Goff SA, Ricke D, Lan TH, Presting G, Wang RL, et al. A draft sequence of the rice genome (Oryza sativa L. ssp japonica) SCIENCE. 2002 APR 5; 296 (5565): 92-100	55	1195	5	94
8	907 Yu J, Hu SN, Wang J, Wong GKS, Li SG, et al. A draft sequence of the rice genome (Oryza sativa L. ssp indica) SCIENCE. 2002 APR 5; 296 (5565): 79-92	56	1171	4	109
9	1252 Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, et al. Systematic functional analysis of the Caenorhabditis elegans genome using RNAi NATURE. 2003 JAN 16; 421 (6920): 231-237	29	1011	5	40
10	1560 Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, et al. A protein interaction map of Drosophila melanogaster SCIENCE. 2003 DEC 5; 302 (5651): 1727-1736	32	910	5	57
#	Date / Author / Journal	LCS	GCS	LCR	CR
11	1866 Collins FS, Lander ES, Rogers J, Waterston RH, Int Human Genome Sequencing Conso Finishing the euchromatic sequence of the human genome NATURE. 2004 OCT 21; 431 (7011): 931-945	45	901	8	71
12	18 Rubin GM, Yandell MD, Wortman JR, Miklos GLG, Nelson CR, et al. Comparative genomics of the eukaryotes SCIENCE. 2000 MAR 24; 287 (5461): 2204-2215	231	866	1	84
13	1104 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, et al. The genome sequence of the malaria mosquito Anopheles gambiae SCIENCE. 2002 OCT 4; 298 (5591): 129-+	247	827	11	52
14	1473 Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, et al. The COG database: an updated version includes eukaryotes BMC BIOINFORMATICS. 2003 SEP 11; 4: Art. No. 41	5	814	7	60
15	896 Cartegni L, Chew SL, Krainer AR Listening to silence and understanding nonsense: Exonic mutations that affect splicing NATURE REVIEWS GENETICS. 2002 APR; 3 (4): 285-298	2	781	4	149
16	1705 Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution NATURE. 2004 APR 1; 428 (6982): 493-521	43	752	19	226
17	169 Fraser AG, Kamath RS, Zipperlen P, Martinez-Campos M, Sohrmann M, et al. Functional genomic analysis of C-elegans chromosome I by systematic RNA interference NATURE. 2000 NOV 16; 408 (6810): 325-330	35	723	2	32
18	1051 Aparicio S, Chapman J, Stupka E, Putnam N, Chia J, et al. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes SCIENCE. 2002 AUG 23; 297 (5585): 1301-1310	82	720	5	97
19	1179 Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, et al. The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins SCIENCE. 2002 DEC 13; 298 (5601): 2157-2167	92	709	7	90
20	272 Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, et al. The COG database: new developments in phylogenetic classification of proteins from complete genomes NUCLEIC ACIDS RESEARCH. 2001 JAN 1; 29 (1): 22-28	11	700	1	11
#	Date / Author / Journal	LCS	GCS	LCR	CR
21	1421 Goll DE, Thompson VF, Li HQ, Wei W, Cong JY The calpain system PHYSIOLOGICAL REVIEWS. 2003 JUL; 83 (3): 731-801	0	681	4	504
22	219 Whitesides GM, Ostuni E, Takayama S, Jiang XY, Ingber DE Soft lithography in biology and biochemistry ANNUAL REVIEW OF BIOMEDICAL ENGINEERING. 2001; 3: 335-373	0	678	1	226
23	144 Six DA, Dennis EA The expanding superfamily of phospholipase A(2) enzymes: classification and characterization BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS. 2000 OCT 31; 1488 (1-2): 1-19	1	660	1	188
24	830 Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, et al. The genome sequence of Schizosaccharomyces pombe NATURE. 2002 FEB 21; 415 (6874): 871-880	83	620	5	78
25	776 Modrek B, Lee C A genomic view of alternative splicing NATURE GENETICS. 2002 JAN; 30 (1): 13-19	15	609	4	39
26	1615 Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, et al. The Gene Ontology (GO) database and informatics resource NUCLEIC ACIDS RESEARCH. 2004 JAN 1; 32: D258-D261	12	601	4	13
27	286 Aebersold R, Goodlett DR Mass spectrometry in proteomics CHEMICAL REVIEWS. 2001 FEB; 101 (2): 269-295	0	578	1	252
28	205 Riechmann JL, Heard J, Martin G, Reuber L, Jiang CZ, et al. Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes SCIENCE. 2000 DEC 15; 290 (5499): 2105-2110	10	569	2	48
29	1102 Florens L, Washburn MP, Raine JD, Anthony RM, Grainger M, et al. A proteomic view of the Plasmodium falciparum life cycle NATURE. 2002 OCT 3; 419 (6906): 520-526	4	536	1	45
30	1398 Skaletsky H, Kuroda-Kawaguchi T, Minx PJ, Cordum HS, Hillier L, et al. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes NATURE. 2003 JUN 19; 423 (6942): 825-U2	7	506	5	50
#	Date / Author / Journal	LCS	GCS	LCR	CR
31	218 Mann M, Hendrickson RC, Pandey A Analysis of proteins and proteomes by mass spectrometry ANNUAL REVIEW OF BIOCHEMISTRY. 2001; 70: 437-473	3	495	1	93
32	323 Graveley BR Alternative splicing: increasing diversity in the proteomic world TRENDS IN GENETICS. 2001 FEB; 17 (2): 100-107	20	481	2	38
33	552 Ashburner M, Ball CA, Blake JA, Butler H, Cherry JM, et al. Creating the gene ontology resource: Design and implementation GENOME RESEARCH. 2001 AUG; 11 (8): 1425-1433	14	469	2	19
34	1791 Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, et al. Genome evolution in yeasts NATURE. 2004 JUL 1; 430 (6995): 35-44	10	428	9	34
35	226 Ideker T, Galitski T, Hood L A new approach to decoding life: Systems biology ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2001; 2: 343-372	10	426	6	142
36	1427 Levine M, Tjian R Transcription regulation and animal diversity NATURE. 2003 JUL 10; 424 (6945): 147-151	13	397	9	74
37	339 McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, et al. A physical map of the human genome NATURE. 2001 FEB 15; 409 (6822): 934-941	25	394	4	46
38	334 Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, et al. Functional annotation of a full-length mouse cDNA collection NATURE. 2001 FEB 8; 409 (6821): 685-690	23	376	4	26
39	543 Vignais PM, Billoud B, Meyer J Classification and phylogeny of hydrogenases FEMS MICROBIOLOGY REVIEWS. 2001 AUG; 25 (4): 455-501	0	373	1	381
40	874 Takai D, Jones PA Comprehensive analysis of CpG islands in human chromosomes 21 and 22 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 MAR 19; 99 (6): 3740-3745	0	369	2	21
#	Date / Author / Journal	LCS	GCS	LCR	CR
41	1084 Arbeitman MN, Furlong EEM, Imam F, Johnson E, Null BH, et al. Gene expression during the life cycle of Drosophila melanogaster SCIENCE. 2002 SEP 27; 297 (5590): 2270-2275	38	358	4	28
42	67 Vosshall LB, Wong AM, Axel R An olfactory sensory map in the fly brain CELL. 2000 JUL 21; 102 (2): 147-159	22	348	2	72
43	223 Mackay TFC The genetic architecture of quantitative traits ANNUAL REVIEW OF GENETICS. 2001; 35: 303-339	8	333	5	251
44	461 Reymond A, Meroni G, Fantozzi A, Merla G, Cairo S, et al. The tripartite motif family identifies cell compartments EMBO JOURNAL. 2001 MAY 1; 20 (9): 2140-2151	1	329	1	64
45	63 Frye RA Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2000 JUL 5; 273 (2): 793-798	0	323	1	22
46	454 Jenssen TK, Laegreid A, Komorowski J, Hovig E A literature network of human genes for high-throughput analysis of gene expression NATURE GENETICS. 2001 MAY; 28 (1): 21-+	5	323	2	31
47	803 Angata T, Varki A Chemical diversity in the sialic acids and related alpha-keto acids: An evolutionary perspective CHEMICAL REVIEWS. 2002 FEB; 102 (2): 439-469	1	321	4	426
48	419 Berg JS, Powell BC, Cheney RE A millennial myosin census MOLECULAR BIOLOGY OF THE CELL. 2001 APR; 12 (4): 780-794	3	318	3	65
49	17 Myers EW, Sutton GG, Delcher AL, Dew IM, Fasulo DP, et al. A whole-genome assembly of Drosophila SCIENCE. 2000 MAR 24; 287 (5461): 2196-2204	94	305	3	20
50	337 Bock JB, Matern HT, Peden AA, Scheller RH A genomic perspective on membrane compartment organization NATURE. 2001 FEB 15; 409 (6822): 839-841	2	303	2	9
#	Date / Author / Journal	LCS	GCS	LCR	CR
51	797 Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, et al. Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 JAN 22; 99 (2): 757-762	29	302	1	55
52	1249 Lewis BP, Green RE, Brenner SE Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 JAN 7; 100 (1): 189-192	6	299	5	37
53	2541 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al. Evolution of genes and genomes on the Drosophila phylogeny NATURE. 2007 NOV 8; 450 (7167): 203-218	45	299	19	151
54	601 Huelsken J, Birchmeier W New aspects of Wnt signaling pathways in higher vertebrates CURRENT OPINION IN GENETICS & DEVELOPMENT. 2001 OCT; 11 (5): 547-553	0	293	3	83
55	724 Contag CH, Bachmann MH Advances in vivo bioluminescence imaging of gene expression ANNUAL REVIEW OF BIOMEDICAL ENGINEERING. 2002; 4: 235-260	0	291	3	153
56	900 Minke B, Cook B TRP channel proteins and signal transduction PHYSIOLOGICAL REVIEWS. 2002 APR; 82 (2): 429-472	0	291	2	222
57	346 Brogiolo W, Stocker H, Ikeya T, Rintelen F, Fernandez R, et al. An evolutionarily conserved function of the Drosophila insulin receptor and insulin-like peptides in growth control CURRENT BIOLOGY. 2001 FEB 20; 11 (4): 213-221	15	286	1	46
58	2322 Weinstock GM, Robinson GE, Gibbs RA, Worley KC, Evans JD, et al. Insights into social insects from the genome of the honeybee Apis mellifera NATURE. 2006 OCT 26; 443 (7114): 931-949	51	286	17	180
59	4 Harfe BD, Jinks-Robertson S DNA mismatch repair and genetic instability ANNUAL REVIEW OF GENETICS. 2000; 34: 359-399	1	284	1	240
60	1759 Schubeler D, MacAlpine DM, Scalzo D, Wirbelauer C, Kooperberg C, et al. The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote GENES & DEVELOPMENT. 2004 JUN 1; 18 (11): 1263-1271	2	282	2	47
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61	143 Black DL Protein diversity from alternative splicing: A challenge for bioinformatics and post-genome biology CELL. 2000 OCT 27; 103 (3): 367-370	16	277	2	20
62	338 Shoemaker DD, Schadt EE, Armour CD, He YD, Garrett-Engele P, et al. Experimental annotation of the human genome using microarray technology NATURE. 2001 FEB 15; 409 (6822): 922-+	18	277	5	28
63	458 Shevchenko A, Sunyaev S, Loboda A, Shevehenko A, Bork P, et al. Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time of flight mass spectrometry and BLAST homology searching ANALYTICAL CHEMISTRY. 2001 MAY 1; 73 (9): 1917-1926	2	274	2	48
64	585 Murphy DJ The biogenesis and functions of lipid bodies in animals, plants and microorganisms PROGRESS IN LIPID RESEARCH. 2001 SEP; 40 (5): 325-438	0	267	2	729
65	1700 Wasserman WW, Sandelin A Applied bioinformatics for the identification of regulatory elements NATURE REVIEWS GENETICS. 2004 APR; 5 (4): 276-287	2	263	7	98
66	641 De Gregorio E, Spellman PT, Rubin GM, Lemaitre B Genome-wide analysis of the Drosophila immune response by using oligonucleotide microarrays PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 OCT 23; 98 (22): 12590-12595	26	262	6	32
67	224 Nasmyth K Disseminating the genome: Joining, resolving, and separating sister chromatids during mitosis and meiosis ANNUAL REVIEW OF GENETICS. 2001; 35: 673-745	0	247	2	233
68	1741 Bellen HJ, Levis RW, Liao GC, He YC, Carlson JW, et al. The BDGP gene disruption project: Single transposon insertions associated with 40% of Drosophila genes GENETICS. 2004 JUN; 167 (2): 761-781	23	247	15	94
69	22 Rubin GM, Hong L, Brokstein P, Evans-Holm M, Frise E, et al. A Drosophila complementary DNA resource SCIENCE. 2000 MAR 24; 287 (5461): 2222-2224	137	241	1	7
70	1909 Xia QY, Zhou ZY, Lu C, Cheng DJ, Dai FY, et al. A draft sequence for the genome of the domesticated silkworm (Bombyx mori) SCIENCE. 2004 DEC 10; 306 (5703): 1937-1940	47	240	7	33
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71	51 Rong YS, Golic KG Gene targeting by homologous recombination in Drosophila SCIENCE. 2000 JUN 16; 288 (5473): 2013-2018	59	234	1	40
72	164 Zhang HB, Stallock JP, Ng JC, Reinhard C, Neufeld TP Regulation of cellular growth by the Drosophila target of rapamycin dTOR GENES & DEVELOPMENT. 2000 NOV 1; 14 (21): 2712-2724	3	228	1	70
73	1497 Verjovski-Almeida S, DeMarco R, Martins EAL, Guimaraes PEM, Ojopi EPB, et al. Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni NATURE GENETICS. 2003 OCT; 35 (2): 148-157	5	228	2	50
74	1007 Lopez-Otin C, Overall CM Protease degradomics: A new challenge for proteomics NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2002 JUL; 3 (7): 509-519	2	227	1	50
75	799 Niwa R, Nagata-Ohashi K, Takeichi M, Mizuno K, Uemura T Control of actin reorganization by Slingshot, a family of phosphatases that dephosphorylate ADF/cofilin CELL. 2002 JAN 25; 108 (2): 233-246	1	226	4	71
76	40 Ewing B, Green P Analysis of expressed sequence tags indicates 35,000 human genes NATURE GENETICS. 2000 JUN; 25 (2): 232-234	25	223	1	19
77	777 Barton NH, Keightley PD Understanding quantitative genetic variation NATURE REVIEWS GENETICS. 2002 JAN; 3 (1): 11-21	3	218	4	118
78	2124 Dehal P, Boore JL Two rounds of whole genome duplication in the ancestral vertebrate PLOS BIOLOGY. 2005 OCT; 3 (10): Art. No. e314	0	218	7	51
79	595 Moberg KH, Bell DW, Wahrer DCR, Haber DA, Hariharan IK Archipelago regulates Cyclin E levels in Drosophila and is mutated in human cancer cell lines NATURE. 2001 SEP 20; 413 (6853): 311-316	4	216	1	22
80	1671 Thibault ST, Singer MA, Miyazaki WY, Milash B, Dompe NA, et al. A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac NATURE GENETICS. 2004 MAR; 36 (3): 283-287	23	216	3	26
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81	109 Wodarz A, Ramrath A, Grimm A, Knust E Drosophila atypical protein kinase C associates with Bazooka and controls polarity of epithelia and neuroblasts JOURNAL OF CELL BIOLOGY. 2000 SEP 18; 150 (6): 1361-1374	8	215	1	70
82	225 Tepass U, Tanentzapf G Epithelial cell polarity and cell junctions in Drosophila ANNUAL REVIEW OF GENETICS. 2001; 35: 747-784	5	215	4	194
83	1652 Mita K, Kasahara M, Sasaki S, Nagayasu Y, Yamada T, et al. The genome sequence of silkworm, Bombyx mori DNA RESEARCH. 2004 FEB 29; 11 (1): 27-35	42	212	5	41
84	324 Kaisho T, Akira S Dendritic-cell function in Toll-like receptor-and MyD88 knockout mice TRENDS IN IMMUNOLOGY. 2001 FEB; 22 (2): 78-83	0	210	1	29
85	502 Swanson WJ, Clark AG, Waldrip-Dail HM, Wolfner MF, Aquadro CF Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 JUN 19; 98 (13): 7375-7379	16	209	3	62
86	678 Claridge-Chang A, Wijnen H, Naef F, Boothroyd C, Rajewsky N, et al. Circadian regulation of gene expression systems in the Drosophila head NEURON. 2001 NOV 20; 32 (4): 657-671	12	204	2	85
87	2211 Brooks CL, Gu W p53 ubiquitination: Mdm2 and beyond MOLECULAR CELL. 2006 FEB 3; 21 (3): 307-315	0	204	2	94
88	728 Putney LK, Denker SP, Barber DL The changing face of the Na+/H+ exchanger, NHE1: Structure, regulation, and cellular actions ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY. 2002; 42: 527-552	0	202	1	159
89	778 Samonte RV, Eichler EE Segmental duplications and the evolution of the primate genome NATURE REVIEWS GENETICS. 2002 JAN; 3 (1): 65-72	4	201	3	58
90	798 Markstein M, Markstein P, Markstein V, Levine MS Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 JAN 22; 99 (2): 763-768	16	198	3	37
#	Date / Author / Journal	LCS	GCS	LCR	CR
91	384 Scott K, Brady R, Cravchik A, Morozov P, Rzhetsky A, et al. A chemosensory gene family encoding candidate gustatory and olfactory receptors in Drosophila CELL. 2001 MAR 9; 104 (5): 661-673	18	197	4	77
92	86 Gao Q, Yuan BB, Chess A Convergent projections of Drosophila olfactory neurons to specific glomeruli in the antennal lobe NATURE NEUROSCIENCE. 2000 AUG; 3 (8): 780-785	13	195	2	38
93	197 Werner T, Liu G, Kang D, Ekengren S, Steiner H, et al. A family of peptidoglycan recognition proteins in the fruit fly Drosophila melanogaster PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2000 DEC 5; 97 (25): 13772-13777	12	195	2	44
94	482 Hewes RS, Taghert PH Neuropeptides and neuropeptide receptors in the Drosophila melanogaster genome GENOME RESEARCH. 2001 JUN; 11 (6): 1126-1142	58	194	6	101
95	273 Costanzo MC, Crawford ME, Hirschman JE, Kranz JE, Olsen P, et al. YPD (TM), PombePD (TM) and WormPD (TM): model organism volumes of the BioKnowledge (TM) Library, an integrated resource for protein information NUCLEIC ACIDS RESEARCH. 2001 JAN 1; 29 (1): 75-79	7	193	1	7
96	344 Aravind L, Dixit VM, Koonin EV Apoptotic molecular machinery: Vastly increased complexity in vertebrates revealed by genome comparisons SCIENCE. 2001 FEB 16; 291 (5507): 1279-+	8	193	1	42
97	61 Tissier A, McDonald JP, Frank EG, Woodgate R Pol iota, a remarkably error-prone human DNA polymerase GENES & DEVELOPMENT. 2000 JUL 1; 14 (13): 1642-1650	2	192	1	61
98	1963 Drysdale RA, Crosby MA, FlyBase Consortium FlyBase: genes and gene models NUCLEIC ACIDS RESEARCH. 2005 JAN 1; 33: D390-D395	23	190	4	19
99	263 Mackay TFC Quantitative trait loci in Drosophila NATURE REVIEWS GENETICS. 2001 JAN; 2 (1): 11-20	12	188	3	81
100	116 Lee JY, Spicer AP Hyaluronan: a multifunctional, megaDalton, stealth molecule CURRENT OPINION IN CELL BIOLOGY. 2000 OCT; 12 (5): 581-586	0	187	1	38

Date / Author / Journal

LCS

GCS

LCR

345 Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al.

The sequence of the human genome

SCIENCE. 2001 FEB 16; 291 (5507): 1304-+

382

5111

192

32 Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al.

Gene Ontology: tool for the unification of biology

NATURE GENETICS. 2000 MAY; 25 (1): 25-29

4332

199 Kaul S, Koo HL, Jenkins J, Rizzo M, Rooney T, et al.

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

NATURE. 2000 DEC 14; 408 (6814): 796-815

218

3171

122

16 Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, et al.

The genome sequence of Drosophila melanogaster

SCIENCE. 2000 MAR 24; 287 (5461): 2185-2195

2819

1175 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al.

Initial sequencing and comparative analysis of the mouse genome

NATURE. 2002 DEC 5; 420 (6915): 520-562

166

2474

331

786 Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, et al.

The Pfam Protein Families Database

NUCLEIC ACIDS RESEARCH. 2002 JAN 1; 30 (1): 276-280

1376

908 Goff SA, Ricke D, Lan TH, Presting G, Wang RL, et al.

A draft sequence of the rice genome (Oryza sativa L. ssp japonica)

SCIENCE. 2002 APR 5; 296 (5565): 92-100

1195

907 Yu J, Hu SN, Wang J, Wong GKS, Li SG, et al.

A draft sequence of the rice genome (Oryza sativa L. ssp indica)

SCIENCE. 2002 APR 5; 296 (5565): 79-92

1171

109

1252 Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, et al.

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

NATURE. 2003 JAN 16; 421 (6920): 231-237

1011

1560 Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, et al.

A protein interaction map of Drosophila melanogaster

SCIENCE. 2003 DEC 5; 302 (5651): 1727-1736

910

Date / Author / Journal

LCS

GCS

LCR

1866 Collins FS, Lander ES, Rogers J, Waterston RH, Int Human Genome Sequencing Conso

Finishing the euchromatic sequence of the human genome

NATURE. 2004 OCT 21; 431 (7011): 931-945

901

18 Rubin GM, Yandell MD, Wortman JR, Miklos GLG, Nelson CR, et al.

Comparative genomics of the eukaryotes

SCIENCE. 2000 MAR 24; 287 (5461): 2204-2215

231

866

1104 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, et al.

The genome sequence of the malaria mosquito Anopheles gambiae

SCIENCE. 2002 OCT 4; 298 (5591): 129-+

247

827

1473 Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, et al.

The COG database: an updated version includes eukaryotes

BMC BIOINFORMATICS. 2003 SEP 11; 4: Art. No. 41

814

896 Cartegni L, Chew SL, Krainer AR

Listening to silence and understanding nonsense: Exonic mutations that affect splicing

NATURE REVIEWS GENETICS. 2002 APR; 3 (4): 285-298

781

149

1705 Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, et al.

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

NATURE. 2004 APR 1; 428 (6982): 493-521

752

226

169 Fraser AG, Kamath RS, Zipperlen P, Martinez-Campos M, Sohrmann M, et al.

Functional genomic analysis of C-elegans chromosome I by systematic RNA interference

NATURE. 2000 NOV 16; 408 (6810): 325-330

723

1051 Aparicio S, Chapman J, Stupka E, Putnam N, Chia J, et al.

Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes

SCIENCE. 2002 AUG 23; 297 (5585): 1301-1310

720

1179 Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, et al.

The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins

SCIENCE. 2002 DEC 13; 298 (5601): 2157-2167

709

272 Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, et al.

The COG database: new developments in phylogenetic classification of proteins from complete genomes

NUCLEIC ACIDS RESEARCH. 2001 JAN 1; 29 (1): 22-28

700

Date / Author / Journal

LCS

GCS

LCR

1421 Goll DE, Thompson VF, Li HQ, Wei W, Cong JY

The calpain system

PHYSIOLOGICAL REVIEWS. 2003 JUL; 83 (3): 731-801

681

504

219 Whitesides GM, Ostuni E, Takayama S, Jiang XY, Ingber DE

Soft lithography in biology and biochemistry

ANNUAL REVIEW OF BIOMEDICAL ENGINEERING. 2001; 3: 335-373

678

226

144 Six DA, Dennis EA

The expanding superfamily of phospholipase A(2) enzymes: classification and characterization

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS. 2000 OCT 31; 1488 (1-2): 1-19

660

188

830 Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, et al.

The genome sequence of Schizosaccharomyces pombe

NATURE. 2002 FEB 21; 415 (6874): 871-880

620

776 Modrek B, Lee C

A genomic view of alternative splicing

NATURE GENETICS. 2002 JAN; 30 (1): 13-19

609

1615 Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, et al.

The Gene Ontology (GO) database and informatics resource

NUCLEIC ACIDS RESEARCH. 2004 JAN 1; 32: D258-D261

601

286 Aebersold R, Goodlett DR

Mass spectrometry in proteomics

CHEMICAL REVIEWS. 2001 FEB; 101 (2): 269-295

578

252

205 Riechmann JL, Heard J, Martin G, Reuber L, Jiang CZ, et al.

Arabidopsis transcription factors: Genome-wide comparative analysis among eukaryotes

SCIENCE. 2000 DEC 15; 290 (5499): 2105-2110

569

1102 Florens L, Washburn MP, Raine JD, Anthony RM, Grainger M, et al.

A proteomic view of the Plasmodium falciparum life cycle

NATURE. 2002 OCT 3; 419 (6906): 520-526

536

1398 Skaletsky H, Kuroda-Kawaguchi T, Minx PJ, Cordum HS, Hillier L, et al.

The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

NATURE. 2003 JUN 19; 423 (6942): 825-U2

506

Date / Author / Journal

LCS

GCS

LCR

218 Mann M, Hendrickson RC, Pandey A

Analysis of proteins and proteomes by mass spectrometry

ANNUAL REVIEW OF BIOCHEMISTRY. 2001; 70: 437-473

495

323 Graveley BR

Alternative splicing: increasing diversity in the proteomic world

TRENDS IN GENETICS. 2001 FEB; 17 (2): 100-107

481

552 Ashburner M, Ball CA, Blake JA, Butler H, Cherry JM, et al.

Creating the gene ontology resource: Design and implementation

GENOME RESEARCH. 2001 AUG; 11 (8): 1425-1433

469

1791 Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, et al.

Genome evolution in yeasts

NATURE. 2004 JUL 1; 430 (6995): 35-44

428

226 Ideker T, Galitski T, Hood L

A new approach to decoding life: Systems biology

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS. 2001; 2: 343-372

426

142

1427 Levine M, Tjian R

Transcription regulation and animal diversity

NATURE. 2003 JUL 10; 424 (6945): 147-151

397

339 McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, et al.

A physical map of the human genome

NATURE. 2001 FEB 15; 409 (6822): 934-941

394

334 Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, et al.

Functional annotation of a full-length mouse cDNA collection

NATURE. 2001 FEB 8; 409 (6821): 685-690

376

543 Vignais PM, Billoud B, Meyer J

Classification and phylogeny of hydrogenases

FEMS MICROBIOLOGY REVIEWS. 2001 AUG; 25 (4): 455-501

373

381

874 Takai D, Jones PA

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 MAR 19; 99 (6): 3740-3745

369

Date / Author / Journal

LCS

GCS

LCR

1084 Arbeitman MN, Furlong EEM, Imam F, Johnson E, Null BH, et al.

Gene expression during the life cycle of Drosophila melanogaster

SCIENCE. 2002 SEP 27; 297 (5590): 2270-2275

358

67 Vosshall LB, Wong AM, Axel R

An olfactory sensory map in the fly brain

CELL. 2000 JUL 21; 102 (2): 147-159

348

223 Mackay TFC

The genetic architecture of quantitative traits

ANNUAL REVIEW OF GENETICS. 2001; 35: 303-339

333

251

461 Reymond A, Meroni G, Fantozzi A, Merla G, Cairo S, et al.

The tripartite motif family identifies cell compartments

EMBO JOURNAL. 2001 MAY 1; 20 (9): 2140-2151

329

63 Frye RA

Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. 2000 JUL 5; 273 (2): 793-798

323

454 Jenssen TK, Laegreid A, Komorowski J, Hovig E

A literature network of human genes for high-throughput analysis of gene expression

NATURE GENETICS. 2001 MAY; 28 (1): 21-+

323

803 Angata T, Varki A

Chemical diversity in the sialic acids and related alpha-keto acids: An evolutionary perspective

CHEMICAL REVIEWS. 2002 FEB; 102 (2): 439-469

321

426

419 Berg JS, Powell BC, Cheney RE

A millennial myosin census

MOLECULAR BIOLOGY OF THE CELL. 2001 APR; 12 (4): 780-794

318

17 Myers EW, Sutton GG, Delcher AL, Dew IM, Fasulo DP, et al.

A whole-genome assembly of Drosophila

SCIENCE. 2000 MAR 24; 287 (5461): 2196-2204

305

337 Bock JB, Matern HT, Peden AA, Scheller RH

A genomic perspective on membrane compartment organization

NATURE. 2001 FEB 15; 409 (6822): 839-841

303

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GCS

LCR

797 Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, et al.

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 JAN 22; 99 (2): 757-762

302

1249 Lewis BP, Green RE, Brenner SE

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2003 JAN 7; 100 (1): 189-192

299

2541 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al.

Evolution of genes and genomes on the Drosophila phylogeny

NATURE. 2007 NOV 8; 450 (7167): 203-218

299

151

601 Huelsken J, Birchmeier W

New aspects of Wnt signaling pathways in higher vertebrates

CURRENT OPINION IN GENETICS & DEVELOPMENT. 2001 OCT; 11 (5): 547-553

293

724 Contag CH, Bachmann MH

Advances in vivo bioluminescence imaging of gene expression

ANNUAL REVIEW OF BIOMEDICAL ENGINEERING. 2002; 4: 235-260

291

153

900 Minke B, Cook B

TRP channel proteins and signal transduction

PHYSIOLOGICAL REVIEWS. 2002 APR; 82 (2): 429-472

291

222

346 Brogiolo W, Stocker H, Ikeya T, Rintelen F, Fernandez R, et al.

An evolutionarily conserved function of the Drosophila insulin receptor and insulin-like peptides in growth control

CURRENT BIOLOGY. 2001 FEB 20; 11 (4): 213-221

286

2322 Weinstock GM, Robinson GE, Gibbs RA, Worley KC, Evans JD, et al.

Insights into social insects from the genome of the honeybee Apis mellifera

NATURE. 2006 OCT 26; 443 (7114): 931-949

286

180

4 Harfe BD, Jinks-Robertson S

DNA mismatch repair and genetic instability

ANNUAL REVIEW OF GENETICS. 2000; 34: 359-399

284

240

1759 Schubeler D, MacAlpine DM, Scalzo D, Wirbelauer C, Kooperberg C, et al.

The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote

GENES & DEVELOPMENT. 2004 JUN 1; 18 (11): 1263-1271

282

Date / Author / Journal

Protein diversity from alternative splicing: A challenge for bioinformatics and post-genome biology

CELL. 2000 OCT 27; 103 (3): 367-370

277

338 Shoemaker DD, Schadt EE, Armour CD, He YD, Garrett-Engele P, et al.

Experimental annotation of the human genome using microarray technology

NATURE. 2001 FEB 15; 409 (6822): 922-+

277

458 Shevchenko A, Sunyaev S, Loboda A, Shevehenko A, Bork P, et al.

Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time of flight mass spectrometry and BLAST homology searching

ANALYTICAL CHEMISTRY. 2001 MAY 1; 73 (9): 1917-1926

274

585 Murphy DJ

The biogenesis and functions of lipid bodies in animals, plants and microorganisms

PROGRESS IN LIPID RESEARCH. 2001 SEP; 40 (5): 325-438

267

729

1700 Wasserman WW, Sandelin A

Applied bioinformatics for the identification of regulatory elements

NATURE REVIEWS GENETICS. 2004 APR; 5 (4): 276-287

263

641 De Gregorio E, Spellman PT, Rubin GM, Lemaitre B

Genome-wide analysis of the Drosophila immune response by using oligonucleotide microarrays

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 OCT 23; 98 (22): 12590-12595

262

224 Nasmyth K

Disseminating the genome: Joining, resolving, and separating sister chromatids during mitosis and meiosis

ANNUAL REVIEW OF GENETICS. 2001; 35: 673-745

247

233

1741 Bellen HJ, Levis RW, Liao GC, He YC, Carlson JW, et al.

The BDGP gene disruption project: Single transposon insertions associated with 40% of Drosophila genes

GENETICS. 2004 JUN; 167 (2): 761-781

247

22 Rubin GM, Hong L, Brokstein P, Evans-Holm M, Frise E, et al.

A Drosophila complementary DNA resource

SCIENCE. 2000 MAR 24; 287 (5461): 2222-2224

137

241

1909 Xia QY, Zhou ZY, Lu C, Cheng DJ, Dai FY, et al.

A draft sequence for the genome of the domesticated silkworm (Bombyx mori)

SCIENCE. 2004 DEC 10; 306 (5703): 1937-1940

240

Date / Author / Journal

Gene targeting by homologous recombination in Drosophila

SCIENCE. 2000 JUN 16; 288 (5473): 2013-2018

234

164 Zhang HB, Stallock JP, Ng JC, Reinhard C, Neufeld TP

Regulation of cellular growth by the Drosophila target of rapamycin dTOR

GENES & DEVELOPMENT. 2000 NOV 1; 14 (21): 2712-2724

228

1497 Verjovski-Almeida S, DeMarco R, Martins EAL, Guimaraes PEM, Ojopi EPB, et al.

Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni

NATURE GENETICS. 2003 OCT; 35 (2): 148-157

228

1007 Lopez-Otin C, Overall CM

Protease degradomics: A new challenge for proteomics

NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2002 JUL; 3 (7): 509-519

227

799 Niwa R, Nagata-Ohashi K, Takeichi M, Mizuno K, Uemura T

Control of actin reorganization by Slingshot, a family of phosphatases that dephosphorylate ADF/cofilin

CELL. 2002 JAN 25; 108 (2): 233-246

226

40 Ewing B, Green P

Analysis of expressed sequence tags indicates 35,000 human genes

NATURE GENETICS. 2000 JUN; 25 (2): 232-234

223

777 Barton NH, Keightley PD

Understanding quantitative genetic variation

NATURE REVIEWS GENETICS. 2002 JAN; 3 (1): 11-21

218

118

2124 Dehal P, Boore JL

Two rounds of whole genome duplication in the ancestral vertebrate

PLOS BIOLOGY. 2005 OCT; 3 (10): Art. No. e314

218

595 Moberg KH, Bell DW, Wahrer DCR, Haber DA, Hariharan IK

Archipelago regulates Cyclin E levels in Drosophila and is mutated in human cancer cell lines

NATURE. 2001 SEP 20; 413 (6853): 311-316

216

1671 Thibault ST, Singer MA, Miyazaki WY, Milash B, Dompe NA, et al.

A complementary transposon tool kit for Drosophila melanogaster using P and piggyBac

NATURE GENETICS. 2004 MAR; 36 (3): 283-287

216

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LCS

GCS

LCR

109 Wodarz A, Ramrath A, Grimm A, Knust E

Drosophila atypical protein kinase C associates with Bazooka and controls polarity of epithelia and neuroblasts

JOURNAL OF CELL BIOLOGY. 2000 SEP 18; 150 (6): 1361-1374

215

225 Tepass U, Tanentzapf G

Epithelial cell polarity and cell junctions in Drosophila

ANNUAL REVIEW OF GENETICS. 2001; 35: 747-784

215

194

1652 Mita K, Kasahara M, Sasaki S, Nagayasu Y, Yamada T, et al.

The genome sequence of silkworm, Bombyx mori

DNA RESEARCH. 2004 FEB 29; 11 (1): 27-35

212

324 Kaisho T, Akira S

Dendritic-cell function in Toll-like receptor-and MyD88 knockout mice

TRENDS IN IMMUNOLOGY. 2001 FEB; 22 (2): 78-83

210

502 Swanson WJ, Clark AG, Waldrip-Dail HM, Wolfner MF, Aquadro CF

Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2001 JUN 19; 98 (13): 7375-7379

209

678 Claridge-Chang A, Wijnen H, Naef F, Boothroyd C, Rajewsky N, et al.

Circadian regulation of gene expression systems in the Drosophila head

NEURON. 2001 NOV 20; 32 (4): 657-671

204

2211 Brooks CL, Gu W

p53 ubiquitination: Mdm2 and beyond

MOLECULAR CELL. 2006 FEB 3; 21 (3): 307-315

204

728 Putney LK, Denker SP, Barber DL

The changing face of the Na+/H+ exchanger, NHE1: Structure, regulation, and cellular actions

ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY. 2002; 42: 527-552

202

159

778 Samonte RV, Eichler EE

Segmental duplications and the evolution of the primate genome

NATURE REVIEWS GENETICS. 2002 JAN; 3 (1): 65-72

201

798 Markstein M, Markstein P, Markstein V, Levine MS

Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2002 JAN 22; 99 (2): 763-768

198

Date / Author / Journal

LCS

GCS

LCR

384 Scott K, Brady R, Cravchik A, Morozov P, Rzhetsky A, et al.

A chemosensory gene family encoding candidate gustatory and olfactory receptors in Drosophila

CELL. 2001 MAR 9; 104 (5): 661-673

197

86 Gao Q, Yuan BB, Chess A

Convergent projections of Drosophila olfactory neurons to specific glomeruli in the antennal lobe

NATURE NEUROSCIENCE. 2000 AUG; 3 (8): 780-785

195

197 Werner T, Liu G, Kang D, Ekengren S, Steiner H, et al.

A family of peptidoglycan recognition proteins in the fruit fly Drosophila melanogaster

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2000 DEC 5; 97 (25): 13772-13777

195

482 Hewes RS, Taghert PH

Neuropeptides and neuropeptide receptors in the Drosophila melanogaster genome

GENOME RESEARCH. 2001 JUN; 11 (6): 1126-1142

194

101

273 Costanzo MC, Crawford ME, Hirschman JE, Kranz JE, Olsen P, et al.

YPD (TM), PombePD (TM) and WormPD (TM): model organism volumes of the BioKnowledge (TM) Library, an integrated resource for protein information

NUCLEIC ACIDS RESEARCH. 2001 JAN 1; 29 (1): 75-79

193

344 Aravind L, Dixit VM, Koonin EV

Apoptotic molecular machinery: Vastly increased complexity in vertebrates revealed by genome comparisons

SCIENCE. 2001 FEB 16; 291 (5507): 1279-+

193

61 Tissier A, McDonald JP, Frank EG, Woodgate R

Pol iota, a remarkably error-prone human DNA polymerase

GENES & DEVELOPMENT. 2000 JUL 1; 14 (13): 1642-1650

192

1963 Drysdale RA, Crosby MA, FlyBase Consortium

FlyBase: genes and gene models

NUCLEIC ACIDS RESEARCH. 2005 JAN 1; 33: D390-D395

190

263 Mackay TFC

Quantitative trait loci in Drosophila

NATURE REVIEWS GENETICS. 2001 JAN; 2 (1): 11-20

188

100

116 Lee JY, Spicer AP

Hyaluronan: a multifunctional, megaDalton, stealth molecule

CURRENT OPINION IN CELL BIOLOGY. 2000 OCT; 12 (5): 581-586

187

The genome sequence of Drosophila melanogaster Papers citing 'The Genome Sequence of Drosophilia Melanogaster,' by MD Adams at al., Science 287 March 24, 2000	Historiographs	Glossary HistCite Guide About Grand Totals: LCS 10314, GCS 125233, CR 169720 Collection span: 1999 - 2009
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